Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1991c_(-)_2234313_2234657
DateMon Aug 5 13:25:09 BST 2019
Unique Job IDda8ce54e3be939a2
SequenceVVISRAEIYW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.975 Y:34.897 Z:39.541
Model (left) based on template d1ne8a_
Top template information
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
Confidence and coverage
Confidence: 99.9% Coverage: 99%
113 residues ( 99% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ne8a_



99.9 37
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
2c4mzpC_



99.9 37
PDB header:hydrolase
Chain: C: PDB Molecule:mazf mrna interferase;
PDBTitle: mazf from s. aureus crystal form iii, c2221, 2.7 a
3c5hjzA_



99.9 30
PDB header:hydrolase/rna
Chain: A: PDB Molecule:endoribonuclease mazf9;
PDBTitle: structure of m. tuberculosis mazf-mt1 (rv2801c) in complex with rna
4c5hk3B_



99.9 98
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endoribonuclease mazf6;
PDBTitle: crystal structure of m. tuberculosis mazf-mt3 t52d-f62d mutant in2 complex with dna
5d1m1fa_



99.9 26
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
6c5wygC_



99.9 22
PDB header:hydrolase
Chain: C: PDB Molecule:probable endoribonuclease mazf7;
PDBTitle: the crystal structure of the apo form of mtb mazf
7d1ub4a_



99.9 20
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
8c5xe3B_



99.9 29
PDB header:hydrolase/antitoxin
Chain: B: PDB Molecule:endoribonuclease mazf4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
9c5ccaA_



99.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease mazf3;
PDBTitle: crystal structure of mtb toxin
10c3jrzA_



95.0 12
PDB header:toxin
Chain: A: PDB Molecule:ccdb;
PDBTitle: ccdbvfi-formii-ph5.6
11d3vuba_



92.9 9
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:CcdB
12d1h3za_



62.3 7
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
13c5ikjA_



60.4 19
PDB header:transcription
Chain: A: PDB Molecule:cryptic loci regulator 2;
PDBTitle: structure of clr2 bound to the clr1 c-terminus
14c5vc8B_



54.4 10
PDB header:dna binding protein
Chain: B: PDB Molecule:histone-lysine n-methyltransferase nsd2;
PDBTitle: crystal structure of the whsc1 pwwp1 domain
15c3mxuA_



42.5 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from bartonella2 henselae
16d1ex0a1



39.9 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain
17c2edgA_



37.0 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: solution structure of the gcv_h domain from mouse glycine
18c2l89A_



36.3 10
PDB header:protein binding
Chain: A: PDB Molecule:pwwp domain-containing protein 1;
PDBTitle: solution structure of pdp1 pwwp domain reveals its unique binding2 sites for methylated h4k20 and dna
19c3a8jF_



32.3 23
PDB header:transferase/transport protein
Chain: F: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of et-ehred complex
20d1onla_



28.2 25
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
21c3iftA_



not modelled 24.5 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from2 mycobacterium tuberculosis, using x-rays from the compact light3 source.
22d1hpca_



not modelled 22.4 21
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
23c2fqpD_



not modelled 22.1 10
PDB header:metal binding protein
Chain: D: PDB Molecule:hypothetical protein bp2299;
PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution
24c3llrA_



not modelled 20.1 18
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a;
PDBTitle: crystal structure of the pwwp domain of human dna (cytosine-5-)-2 methyltransferase 3 alpha
25d2daqa1



not modelled 19.2 19
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
26d2q3za1



not modelled 16.9 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain
27d2zjrh1



not modelled 16.2 13
Fold:Ribosomal protein L14
Superfamily:Ribosomal protein L14
Family:Ribosomal protein L14
28c2jysA_



not modelled 16.0 10
PDB header:hydrolase
Chain: A: PDB Molecule:protease/reverse transcriptase;
PDBTitle: solution structure of simian foamy virus (mac) protease
29c4rmoA_



not modelled 16.0 10
PDB header:toxin/rna
Chain: A: PDB Molecule:cptn toxin;
PDBTitle: crystal structure of the cptin type iii toxin-antitoxin system from2 eubacterium rectale
30c3u5gB_



not modelled 15.9 18
PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s1-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
31c4mnoA_



not modelled 14.7 10
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 1a;
PDBTitle: crystal structure of aif1a from pyrococcus abyssi
32d1whia_



not modelled 14.6 17
Fold:Ribosomal protein L14
Superfamily:Ribosomal protein L14
Family:Ribosomal protein L14
33c6g25A_



not modelled 14.6 10
PDB header:oncoprotein
Chain: A: PDB Molecule:histone-lysine n-methyltransferase nsd3;
PDBTitle: x-ray structure of nsd3-pwwp1 in complex with compound 4
34d2j01o1



not modelled 14.1 13
Fold:Ribosomal protein L14
Superfamily:Ribosomal protein L14
Family:Ribosomal protein L14
35d1fxza1



not modelled 13.7 10
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
36c3bboM_



not modelled 13.2 19
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein l14;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
37c3zey0_



not modelled 12.4 6
PDB header:ribosome
Chain: 0: PDB Molecule:40s ribosomal protein s3a, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
38d1rz4a1



not modelled 12.0 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
39c5xyiB_



not modelled 11.6 5
PDB header:ribosome
Chain: B: PDB Molecule:ribosomal protein s3ae, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
40c2dgyA_



not modelled 11.6 30
PDB header:translation
Chain: A: PDB Molecule:mgc11102 protein;
PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein
41c1cffB_



not modelled 11.4 38
PDB header:calmodulin
Chain: B: PDB Molecule:calcium pump;
PDBTitle: nmr solution structure of a complex of calmodulin with a binding2 peptide of the ca2+-pump
42c2oziA_



not modelled 11.1 6
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rpa4178;
PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009
43c1fxzC_



not modelled 11.0 10
PDB header:plant protein
Chain: C: PDB Molecule:glycinin g1;
PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer
44c5cuzA_



not modelled 11.0 41
PDB header:chaperone
Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type d protein,
PDBTitle: crystal structure of semet-substituted n-terminal truncated human b12-2 chaperone cbld (108-296)
45d1okja2



not modelled 10.8 16
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
46c6n1bA_



not modelled 10.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate-binding protein;
PDBTitle: crystal structure of an n-acetylgalactosamine deacetylase from f.2 plautii in complex with blood group b trisaccharide
47c3c19A_



not modelled 10.4 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mk0293;
PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19
48c3bxpA_



not modelled 10.3 25
PDB header:hydrolase
Chain: A: PDB Molecule:putative lipase/esterase;
PDBTitle: crystal structure of a putative carboxylesterase (lp_2923) from2 lactobacillus plantarum wcfs1 at 1.70 a resolution
49d1jt8a_



not modelled 10.2 10
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
50d2et1a1



not modelled 10.0 10
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
51c3j3aB_



not modelled 9.8 17
PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s3a;
PDBTitle: structure of the human 40s ribosomal proteins
52c4yknA_



not modelled 9.4 21
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha,
PDBTitle: pi3k alpha lipid kinase with active site inhibitor
53c3kscD_



not modelled 9.4 14
PDB header:plant protein
Chain: D: PDB Molecule:lega class;
PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin from pisum2 sativum l.
54c2zkrt_



not modelled 9.4 21
PDB header:ribosomal protein/rna
Chain: T: PDB Molecule:rna expansion segment es39 part iii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
55c6bwqB_



not modelled 9.2 21
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
56c5ofxF_



not modelled 9.1 20
PDB header:sugar binding protein
Chain: F: PDB Molecule:plla;
PDBTitle: plla lectin, trisaccharide complex
57c3bcxA_



not modelled 8.9 10
PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-dehydrase;
PDBTitle: e1 dehydrase
58c3j81i_



not modelled 8.7 12
PDB header:ribosome
Chain: I: PDB Molecule:es8;
PDBTitle: cryoem structure of a partial yeast 48s preinitiation complex
59d1b6aa2



not modelled 8.3 22
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
60c3w1hB_



not modelled 8.1 14
PDB header:transferase
Chain: B: PDB Molecule:l-seryl-trna(sec) selenium transferase;
PDBTitle: crystal structure of the selenocysteine synthase sela from aquifex2 aeolicus
61c3d55A_



not modelled 8.1 13
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
62c2eaaB_



not modelled 8.0 11
PDB header:plant protein
Chain: B: PDB Molecule:7s globulin-3;
PDBTitle: crystal structure of adzuki bean 7s globulin-3
63c1ssfA_



not modelled 8.0 17
PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
64c3pfsA_



not modelled 7.9 15
PDB header:protein binding
Chain: A: PDB Molecule:bromodomain and phd finger-containing protein 3;
PDBTitle: pwwp domain of human bromodomain and phd finger-containing protein 3
65d1xgsa2



not modelled 7.9 17
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
66c2oqkA_



not modelled 7.7 18
PDB header:translation
Chain: A: PDB Molecule:putative translation initiation factor eif-1a;
PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a
67c2ka7A_



not modelled 7.6 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: nmr solution structure of tm0212 at 40 c
68c2gfuA_



not modelled 7.6 15
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein msh6;
PDBTitle: nmr solution structure of the pwwp domain of mismatch2 repair protein hmsh6
69c3ehkC_



not modelled 7.4 10
PDB header:plant protein
Chain: C: PDB Molecule:prunin;
PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis
70c5dfzC_



not modelled 7.1 27
PDB header:transferase
Chain: C: PDB Molecule:phosphatidylinositol 3-kinase vps34;
PDBTitle: structure of vps34 complex ii from s. cerevisiae.
71c5a35A_



not modelled 7.1 15
PDB header:transport protein
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage protein h-like (gcvh-l)2 from streptococcus pyogenes
72d1qxya_



not modelled 7.0 17
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
73c4ipaC_



not modelled 6.9 22
PDB header:hydrolase
Chain: C: PDB Molecule:putative curved dna-binding protein;
PDBTitle: structure of a thermophilic arx1
74c1f13A_



not modelled 6.8 11
PDB header:coagulation factor
Chain: A: PDB Molecule:cellular coagulation factor xiii zymogen;
PDBTitle: recombinant human cellular coagulation factor xiii
75c5o60V_



not modelled 6.8 10
PDB header:ribosome
Chain: V: PDB Molecule:50s ribosomal protein l24;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
76c3oeiB_



not modelled 6.8 13
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
77c6mrfA_



not modelled 6.7 11
PDB header:hydrolase
Chain: A: PDB Molecule:methionine aminopeptidase;
PDBTitle: crystal structure of a methionine aminopeptidase metap from2 acinetobacter baumannii
78c5hbaA_



not modelled 6.7 8
PDB header:immune system
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: globular domain of zebrafish complement 1qa protein
79d1zaka2



not modelled 6.7 27
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
80c1zx4B_



not modelled 6.6 25
PDB header:cell cycle
Chain: B: PDB Molecule:plasmid partition par b protein;
PDBTitle: structure of parb bound to dna
81c2of3A_



not modelled 6.5 12
PDB header:structural protein, cell cycle
Chain: A: PDB Molecule:zyg-9;
PDBTitle: tog domain structure from c.elegans zyg9
82c5wpwA_



not modelled 6.4 13
PDB header:allergen
Chain: A: PDB Molecule:11s globulin isoform 1;
PDBTitle: crystal structure of coconut allergen cocosin
83d1kp0a2



not modelled 6.4 23
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
84d1ov3a1



not modelled 6.3 9
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
85c3c3vA_



not modelled 6.3 7
PDB header:allergen
Chain: A: PDB Molecule:arachin arah3 isoform;
PDBTitle: crystal structure of peanut major allergen ara h 3
86d1uija2



not modelled 6.3 11
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
87c4bpp0_



not modelled 6.2 26
PDB header:ribosome
Chain: 0: PDB Molecule:translation initiation factor eif-1a family protein;
PDBTitle: the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 4
88d1vcoa2



not modelled 6.1 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
89c2lfeA_



not modelled 6.0 25
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw2;
PDBTitle: solution nmr structure of n-terminal domain of human e3 ubiquitin-2 protein ligase hecw2, northeast structural genomics consortium (nesg)3 target ht6306a
90c6b4sB_



not modelled 6.0 7
PDB header:allergen
Chain: B: PDB Molecule:11s globulin;
PDBTitle: crystal structure of brazil nut (bertholletia excelsa) allergen ber e2 2
91d1c3ha_



not modelled 5.9 9
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
92d1ckaa_



not modelled 5.8 9
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
93d1wlpb2



not modelled 5.8 9
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
94c5xevA_



not modelled 5.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:xaa-pro dipeptidase,peptidase-related protein;
PDBTitle: crystal structure of a novel xaa-pro dipeptidase from deinococcus2 radiodurans
95d1opka1



not modelled 5.7 18
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
96c4eyzB_



not modelled 5.7 27
PDB header:hydrolase
Chain: B: PDB Molecule:cellulosome-related protein module from ruminococcus
PDBTitle: crystal structure of an uncommon cellulosome-related protein module2 from ruminococcus flavefaciens that resembles papain-like cysteine3 peptidases
97c2eyxA_



not modelled 5.7 9
PDB header:signaling protein
Chain: A: PDB Molecule:v-crk sarcoma virus ct10 oncogene homolog
PDBTitle: c-terminal sh3 domain of ct10-regulated kinase
98c2jnsA_



not modelled 5.6 17
PDB header:unknown function
Chain: A: PDB Molecule:bromodomain-containing protein 4;
PDBTitle: solution structure of the bromodomain-containing protein 42 et domain
99c4lejA_



not modelled 5.6 8
PDB header:allergen, plant protein
Chain: A: PDB Molecule:vicilin;
PDBTitle: crystal structure of the korean pine (pinus koraiensis) vicilin

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