Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1995_(-)_2238149_2238916
DateMon Aug 5 13:25:10 BST 2019
Unique Job IDabd573172aceb742
SequenceVVASGAATKG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.111 Y:42.288 Z:34.374
Model (left) based on template c2p0nA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein nmb1532;
PDBTitle: nmb1532 protein from neisseria meningitidis, unknown function
Confidence and coverage
Confidence:100.0% Coverage: 60%
154 residues ( 60% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2p0nA_
100.0 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein nmb1532;
PDBTitle: nmb1532 protein from neisseria meningitidis, unknown function
2c3v5yC_
99.8 20
PDB header:gene regulation
Chain: C: PDB Molecule:f-box/lrr-repeat protein 5;
PDBTitle: structure of fbxl5 hemerythrin domain, p2(1) cell
3c5fnpB_
99.8 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:iron-sulfur cluster repair protein ytfe;
PDBTitle: high resolution zn containing iron sulfur cluster repair2 protein ytfe
4c3caxA_
98.9 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pf0695;
PDBTitle: crystal structure of uncharacterized protein pf0695
5c2awyB_
95.1 17
PDB header:oxygen storage/transport
Chain: B: PDB Molecule:hemerythrin-like domain protein dcrh;
PDBTitle: met-dcrh-hr
6c4xpyA_
92.7 12
PDB header:oxygen binding protein
Chain: A: PDB Molecule:bacteriohemerythrin;
PDBTitle: crystal structure of hemerythrin : l114y mutant
7c3ci9B_
63.5 18
PDB header:transcription
Chain: B: PDB Molecule:heat shock factor-binding protein 1;
PDBTitle: crystal structure of the human hsbp1
8d1trra_
58.2 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:Trp repressor, TrpR
9c2wviA_
51.7 11
PDB header:transferase
Chain: A: PDB Molecule:mitotic checkpoint serine/threonine-protein
PDBTitle: crystal structure of the n-terminal domain of bubr1
10c2xusA_
46.1 14
PDB header:protein binding
Chain: A: PDB Molecule:breast cancer metastasis-suppressor 1;
PDBTitle: crystal structure of the brms1 n-terminal region
11d1jhga_
44.5 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:Trp repressor, TrpR
12c5n9qA_
40.4 9
PDB header:transferase
Chain: A: PDB Molecule:inactive poly [adp-ribose] polymerase rcd1;
PDBTitle: structure of a. thaliana rcd1(468-567)
13c5lcwS_
34.5 8
PDB header:cell cycle
Chain: S: PDB Molecule:mitotic checkpoint serine/threonine-protein kinase bub1
PDBTitle: cryo-em structure of the anaphase-promoting complex/cyclosome, in2 complex with the mitotic checkpoint complex (apc/c-mcc) at 4.23 angstrom resolution
14d1g3wa2
29.4 11
Fold:Iron-dependent repressor protein, dimerization domain
Superfamily:Iron-dependent repressor protein, dimerization domain
Family:Iron-dependent repressor protein, dimerization domain
15c3frwF_
28.0 14
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative trp repressor protein;
PDBTitle: crystal structure of putative trpr protein from ruminococcus obeum
16c5khuQ_
27.2 8
PDB header:cell cycle
Chain: Q: PDB Molecule:mitotic checkpoint serine/threonine-protein kinase bub1
PDBTitle: model of human anaphase-promoting complex/cyclosome (apc15 deletion2 mutant), in complex with the mitotic checkpoint complex (apc/c-cdc20-3 mcc) based on cryo em data at 4.8 angstrom resolution
17c4lh9A_
26.9 39
PDB header:transcription
Chain: A: PDB Molecule:heterocyst differentiation control protein;
PDBTitle: crystal structure of the refolded hood domain (asp256-gly295) of hetr
18d2isya2
26.6 11
Fold:Iron-dependent repressor protein, dimerization domain
Superfamily:Iron-dependent repressor protein, dimerization domain
Family:Iron-dependent repressor protein, dimerization domain
19d2bl8a1
26.3 17
Fold:Bromodomain-like
Superfamily:Bacteriocin immunity protein-like
Family:EntA-Im
20c2lseA_
25.4 20
PDB header:de novo protein
Chain: A: PDB Molecule:four helix bundle protein;
PDBTitle: solution nmr structure of de novo designed four helix bundle protein,2 northeast structural genomics consortium (nesg) target or188
21c4eqyC_
not modelled 22.4 16
PDB header:transferase
Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: crystal structure of acyl-[acyl-carrier-protein]--udp-n-2 acetylglucosamine o-acyltransferase from burkholderia thailandensis
22c4dckA_
not modelled 22.3 17
PDB header:transport protein/signaling protein
Chain: A: PDB Molecule:sodium channel protein type 5 subunit alpha;
PDBTitle: crystal structure of the c-terminus of voltage-gated sodium channel in2 complex with fgf13 and cam
23c2kbiA_
not modelled 21.5 17
PDB header:metal binding protein
Chain: A: PDB Molecule:sodium channel protein type 5 subunit alpha;
PDBTitle: solution nmr structure of the c-terminal ef-hand domain of2 human cardiac sodium channel nav1.5
24d2bl7a1
not modelled 20.9 12
Fold:Bromodomain-like
Superfamily:Bacteriocin immunity protein-like
Family:EntA-Im
25d1szqa_
not modelled 20.8 12
Fold:2-methylcitrate dehydratase PrpD
Superfamily:2-methylcitrate dehydratase PrpD
Family:2-methylcitrate dehydratase PrpD
26d2jf2a1
not modelled 20.8 9
Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:UDP N-acetylglucosamine acyltransferase
27c4r36A_
not modelled 20.3 10
PDB header:transferase
Chain: A: PDB Molecule:putative acyl-[acyl-carrier-protein]--udp-n-
PDBTitle: crystal structure analysis of lpxa, a udp-n-acetylglucosamine2 acyltransferase from bacteroides fragilis 9343
28c2lahA_
not modelled 19.8 12
PDB header:cell cycle, apoptosis
Chain: A: PDB Molecule:mitotic checkpoint serine/threonine-protein kinase bub1;
PDBTitle: solution nmr structure of mitotic checkpoint serine/threonine-protein2 kinase bub1 n-terminal domain from homo sapiens, northeast structural3 genomics consortium target hr5460a (methods development)
29c4aezC_
not modelled 18.7 11
PDB header:cell cycle
Chain: C: PDB Molecule:mitotic spindle checkpoint component mad3;
PDBTitle: crystal structure of mitotic checkpoint complex
30c5j0lC_
not modelled 18.5 54
PDB header:de novo protein
Chain: C: PDB Molecule:designed protein 3l6hc2_2;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
31d1b77a1
not modelled 18.0 44
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
32c3korD_
not modelled 17.5 10
PDB header:transcription
Chain: D: PDB Molecule:possible trp repressor;
PDBTitle: crystal structure of a putative trp repressor from staphylococcus2 aureus
33c2kavA_
not modelled 17.3 19
PDB header:transport protein regulator
Chain: A: PDB Molecule:sodium channel protein type 2 subunit alpha;
PDBTitle: solution structure of the human voltage-gated sodium channel, brain2 isoform (nav1.2)
34d1fx0a1
not modelled 17.1 8
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
35c6focB_
not modelled 16.0 12
PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase subunit alpha,atp synthase subunit alpha,atp
PDBTitle: f1-atpase from mycobacterium smegmatis
36c3deeA_
not modelled 14.8 19
PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein;
PDBTitle: crystal structure of a putative regulatory protein involved in2 transcription (ngo1945) from neisseria gonorrhoeae fa 1090 at 2.25 a3 resolution
37c2pq4B_
not modelled 14.7 21
PDB header:chaperone/oxidoreductase
Chain: B: PDB Molecule:periplasmic nitrate reductase precursor;
PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide
38c6dkmB_
not modelled 14.2 21
PDB header:de novo protein
Chain: B: PDB Molecule:dhd131_b;
PDBTitle: dhd131
39c2xu6B_
not modelled 14.0 21
PDB header:protein binding
Chain: B: PDB Molecule:mdv1 coiled coil;
PDBTitle: mdv1 coiled coil domain
40c2fynO_
not modelled 14.0 35
PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
41c6n63A_
not modelled 14.0 15
PDB header:metal binding protein
Chain: A: PDB Molecule:encapsulin cargo protein;
PDBTitle: crystal structure of an iron binding protein
42c6fo2R_
not modelled 13.9 14
PDB header:membrane protein
Chain: R: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: cryoem structure of bovine cytochrome bc1 with no ligand bound
43d1czda1
not modelled 13.1 56
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
44c4ynlB_
not modelled 12.7 39
PDB header:transcription
Chain: B: PDB Molecule:heterocyst differentiation control protein;
PDBTitle: crystal structure of the hood domain of anabaena hetr in complex with2 the hexapeptide ergsgr derived from pats
45c5vnyA_
not modelled 12.6 25
PDB header:endocytosis, protein binding
Chain: A: PDB Molecule:lethal (2) giant discs 1, isoform b;
PDBTitle: crystal structure of dm14-3 domain of lgd
46d1iapa_
not modelled 12.2 22
Fold:Regulator of G-protein signaling, RGS
Superfamily:Regulator of G-protein signaling, RGS
Family:Regulator of G-protein signaling, RGS
47c5muxB_
not modelled 12.1 11
PDB header:lyase
Chain: B: PDB Molecule:2-methylcitrate dehydratase;
PDBTitle: crystal structure of 2-methylcitrate dehydratase (mmge) from bacillus2 subtilis.
48c5dg3D_
not modelled 11.9 16
PDB header:transferase
Chain: D: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: structure of pseudomonas aeruginosa lpxa in complex with udp-3-o-(r-3-2 hydroxydecanoyl)-glcnac
49c2lfhA_
not modelled 11.9 14
PDB header:dna binding protein inhibitor
Chain: A: PDB Molecule:dna-binding protein inhibitor id-3;
PDBTitle: solution nmr structure of the helix-loop-helix domain of human id32 protein, northeast structural genomics consortium target hr3111a
50d1z0xa2
not modelled 11.8 19
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
51c2m4gA_
not modelled 11.6 19
PDB header:viral protein
Chain: A: PDB Molecule:murine norovirus vpg protein;
PDBTitle: solution structure of the core domain (11-85) of the murine norovirus2 vpg protein
52c4e6tA_
not modelled 11.5 9
PDB header:transferase
Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: structure of lpxa from acinetobacter baumannii at 1.8a resolution2 (p212121 form)
53d1topa_
not modelled 11.2 10
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
54c4rd8B_
not modelled 10.6 32
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally-unknown protein from2 legionella pneumophila subsp. pneumophila str. philadelphia 1
55d2etha1
not modelled 10.3 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
56c6fddC_
not modelled 10.0 11
PDB header:structural protein
Chain: C: PDB Molecule:whirlin;
PDBTitle: crystal structure of the hhd2 domain of whirlin
57c1b8hA_
not modelled 9.7 44
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase processivity component;
PDBTitle: sliding clamp, dna polymerase
58c6iu8C_
not modelled 9.5 13
PDB header:metal transport
Chain: C: PDB Molecule:vit1;
PDBTitle: crystal structure of cytoplasmic metal binding domain with cobalt ions
59c1kveA_
not modelled 9.2 75
PDB header:toxin
Chain: A: PDB Molecule:smk toxin;
PDBTitle: killer toxin from halotolerant yeast
60c3i3aC_
not modelled 9.1 10
PDB header:transferase
Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-
PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa
61d1i4ya_
not modelled 9.0 16
Fold:Four-helical up-and-down bundle
Superfamily:Hemerythrin-like
Family:Hemerythrin-like
62c2ip6A_
not modelled 9.0 20
PDB header:antimicrobial protein
Chain: A: PDB Molecule:papb;
PDBTitle: crystal structure of pedb
63c5jxxC_
not modelled 8.9 15
PDB header:transferase
Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: crystal structure of udp-n-acetylglucosamine o-acyltransferase (lpxa)2 from moraxella catarrhalis rh4.
64c6egnA_
not modelled 8.9 18
PDB header:de novo protein
Chain: A: PDB Molecule:hg(ii)(grand coilserl16cl19(dle))3-;
PDBTitle: crystal structure of a three-stranded coiled coil peptide containing a2 trigonal planar hg(ii)s3 site modified by d-leu in the second3 coordination sphere
65c4uetA_
not modelled 8.9 10
PDB header:retinol-binding protein
Chain: A: PDB Molecule:nematode fatty acid retinoid binding protein;
PDBTitle: diversity in the structures and ligand binding sites among2 the fatty acid and retinol binding proteins of nematodes3 revealed by na-far-1 from necator americanus
66c2ak0A_
not modelled 8.8 25
PDB header:toxin
Chain: A: PDB Molecule:alpha-conotoxin mii;
PDBTitle: structure of cyclic conotoxin mii-7
67d1avsa_
not modelled 8.7 10
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
68c6egnC_
not modelled 8.7 18
PDB header:de novo protein
Chain: C: PDB Molecule:hg(ii)(grand coilserl16cl19(dle))3-;
PDBTitle: crystal structure of a three-stranded coiled coil peptide containing a2 trigonal planar hg(ii)s3 site modified by d-leu in the second3 coordination sphere
69c6egmA_
not modelled 8.7 18
PDB header:de novo protein
Chain: A: PDB Molecule:apo-(grand coilserl16cl19(dle))3;
PDBTitle: crystal structure of a de novo three-stranded coiled coil peptide2 containing d-leu in a d-site position of a tris-thiolate binding site
70d1zs3a1
not modelled 8.6 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
71c5mc9B_
not modelled 8.5 18
PDB header:cell adhesion
Chain: B: PDB Molecule:laminin subunit beta-1;
PDBTitle: crystal structure of the heterotrimeric integrin-binding region of2 laminin-111
72c1w0jB_
not modelled 8.3 8
PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase alpha chain heart isoform,
PDBTitle: beryllium fluoride inhibited bovine f1-atpase
73d2hmza_
not modelled 8.1 24
Fold:Four-helical up-and-down bundle
Superfamily:Hemerythrin-like
Family:Hemerythrin-like
74d1af7a1
not modelled 8.0 15
Fold:Chemotaxis receptor methyltransferase CheR, N-terminal domain
Superfamily:Chemotaxis receptor methyltransferase CheR, N-terminal domain
Family:Chemotaxis receptor methyltransferase CheR, N-terminal domain
75d1cg5b_
not modelled 7.8 13
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
76d2dn3b1
not modelled 7.8 6
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
77c4n4uA_
not modelled 7.8 22
PDB header:transport protein
Chain: A: PDB Molecule:putative abc transporter periplasmic solute-binding
PDBTitle: crystal structure of abc transporter solute binding protein bb07192 from bordetella bronchiseptica rb50, target efi-510049
78d1zaca_
not modelled 7.6 10
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
79c3t57A_
not modelled 7.6 11
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine o-acyltransferase domain-containing
PDBTitle: activity and crystal structure of arabidopsis udp-n-acetylglucosamine2 acyltransferase
80c3oeoD_
not modelled 7.2 8
PDB header:signaling protein
Chain: D: PDB Molecule:spheroplast protein y;
PDBTitle: the crystal structure e. coli spy
81c4l9mA_
not modelled 7.0 15
PDB header:signaling protein
Chain: A: PDB Molecule:ras guanyl-releasing protein 1;
PDBTitle: autoinhibited state of the ras-specific exchange factor rasgrp1
82d1hrba_
not modelled 7.0 16
Fold:Four-helical up-and-down bundle
Superfamily:Hemerythrin-like
Family:Hemerythrin-like
83d1ozbg_
not modelled 7.0 31
Fold:SecB-like
Superfamily:SecB-like
Family:Bacterial protein-export protein SecB
84c4xngC_
not modelled 6.9 21
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein mg218.1;
PDBTitle: central domain of mycoplasma genitalium terminal organelle protein2 mg491
85c3lw5H_
not modelled 6.9 22
PDB header:photosynthesis
Chain: H: PDB Molecule:putative uncharacterized protein;
PDBTitle: improved model of plant photosystem i
86c2kvcA_
not modelled 6.8 22
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
87c4k6jA_
not modelled 6.8 10
PDB header:cell cycle
Chain: A: PDB Molecule:wings apart-like protein homolog;
PDBTitle: human cohesin inhibitor wapl
88d1gcvb_
not modelled 6.7 9
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
89c4p47A_
not modelled 6.6 6
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 ochrobactrum anthropi (oant_4429), target efi-510151, c-termius bound3 in ligand binding pocket
90d2efva1
not modelled 6.6 12
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:MJ0366-like
91c2k7bA_
not modelled 6.5 10
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 1;
PDBTitle: nmr structure of mg2+-bound cabp1 n-domain
92d3d1kb1
not modelled 6.5 9
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
93d1ifwa_
not modelled 6.4 7
Fold:PABP domain-like
Superfamily:PABC (PABP) domain
Family:PABC (PABP) domain
94c2fyuE_
not modelled 6.3 14
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
95d2qssb1
not modelled 6.3 9
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
96c4p8bA_
not modelled 6.2 10
PDB header:transport protein
Chain: A: PDB Molecule:trap-type transporter, periplasmic component;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 ralstonia eutropha h16 (h16_a1328), target efi-510189, with bound3 (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-acetolactate)
97c4h7yD_
not modelled 6.2 9
PDB header:transferase
Chain: D: PDB Molecule:dual specificity protein kinase ttk;
PDBTitle: crystal structure of the tetratricopeptide repeat (tpr) motif of human2 dual specificity protein kinase mps1
98d1wmub_
not modelled 6.2 6
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
99c1p84E_
not modelled 6.2 13
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex

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