Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1999c_(-)_2243824_2245146
DateMon Aug 5 13:25:10 BST 2019
Unique Job ID1610a8c9da7e2b36
SequenceMRRPLDPRDI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.340 Y:53.738 Z:65.215
Model (left) based on template c5oqtA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
Confidence and coverage
Confidence:100.0% Coverage: 95%
417 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5oqtA_
100.0 25
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
2c6f2wA_
100.0 22
PDB header:transport protein
Chain: A: PDB Molecule:putative amino acid/polyamine transport protein;
PDBTitle: bacterial asc transporter crystal structure in open to in conformation
3c3giaA_
100.0 22
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
4c6nplA_
100.0 19
PDB header:membrane protein
Chain: A: PDB Molecule:solute carrier family 12 (sodium/potassium/chloride
PDBTitle: cryo-em structure of nkcc1
5c4djiA_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
6c6irtB_
100.0 22
PDB header:membrane protein
Chain: B: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: human lat1-4f2hc complex bound with bch
7c6jmqA_
100.0 22
PDB header:membrane protein/immune system
Chain: A: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: lat1-cd98hc complex bound to mem-108 fab
8c3lrcC_
100.0 21
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
9c6csfC_
99.9 15
PDB header:membrane protein
Chain: C: PDB Molecule:sodium/alanine symporter agcs;
PDBTitle: crystal structure of sodium/alanine symporter agcs with d-alanine2 bound
10c2jlnA_
99.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
11c6c08F_
99.5 13
PDB header:membrane protein
Chain: F: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
12c5nvaA_
99.4 12
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
13c6c08C_
99.3 13
PDB header:membrane protein
Chain: C: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
14c2xq2A_
99.1 12
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
15c3dh4A_
99.0 10
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
16c4wgwA_
98.5 12
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: staphylococcus capitis divalent metal ion transporter (dmt) in complex2 with manganese
17c4wgvC_
98.5 12
PDB header:transport protein
Chain: C: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
18c5m87A_
98.0 11
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of eremococcus coleocola manganese transporter
19d2a65a1
97.1 11
Fold:SNF-like
Superfamily:SNF-like
Family:SNF-like
20c4m48A_
96.8 13
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: x-ray structure of dopamine transporter elucidates antidepressant2 mechanism
21c5i6xA_
not modelled 96.7 12
PDB header:membrane protein
Chain: A: PDB Molecule:sodium-dependent serotonin transporter;
PDBTitle: x-ray structure of the ts3 human serotonin transporter complexed with2 paroxetine at the central site
22c4us3A_
not modelled 96.1 12
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: crystal structure of the bacterial nss member mhst in an2 occluded inward-facing state
23c5kteA_
not modelled 95.5 15
PDB header:transport protein/immune system
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of deinococcus radiodurans mnth, an nramp-family2 transition metal transporter
24c2w8aC_
not modelled 95.0 15
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
25c4ainB_
not modelled 92.2 12
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
26c5t77A_
not modelled 78.5 8
PDB header:transport protein
Chain: A: PDB Molecule:putative lipid ii flippase murj;
PDBTitle: crystal structure of the mop flippase murj
27c3hfxA_
not modelled 63.3 11
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
28c5i20C_
not modelled 62.4 16
PDB header:membrane protein
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein
29c3qnqD_
not modelled 44.8 10
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
30c4x5mB_
not modelled 40.4 10
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of semisweet in the inward-open conformation
31c2kncA_
not modelled 39.2 7
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
32c4kppA_
not modelled 33.7 9
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
33c5ldwL_
not modelled 31.4 9
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-ubiquinone oxidoreductase chain 5;
PDBTitle: structure of mammalian respiratory complex i, class1
34c4heaT_
not modelled 31.0 16
PDB header:oxidoreductase
Chain: T: PDB Molecule:nadh-quinone oxidoreductase subunit 12;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
35c6gcs5_
not modelled 30.9 8
PDB header:oxidoreductase
Chain: 5: PDB Molecule:nd5 subunit (nu5m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
36d1fftb2
not modelled 29.5 10
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
37c5i6cB_
not modelled 28.6 15
PDB header:transport protein
Chain: B: PDB Molecule:uric acid-xanthine permease;
PDBTitle: the structure of the eukaryotic purine/h+ symporter, uapa, in complex2 with xanthine
38c6humF_
not modelled 26.5 13
PDB header:proton transport
Chain: F: PDB Molecule:nadh dehydrogenase subunit 5;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
39c3rkoL_
not modelled 24.2 13
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
40c2lonA_
not modelled 23.3 22
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
41c5khnB_
not modelled 21.2 11
PDB header:membrane protein
Chain: B: PDB Molecule:rnd transporter;
PDBTitle: crystal structures of the burkholderia multivorans hopanoid2 transporter hpnn
42c2na6C_
not modelled 19.9 12
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
43c2na6A_
not modelled 19.9 12
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
44c2na6B_
not modelled 19.9 12
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
45c4qtnB_
not modelled 18.9 10
PDB header:transport protein
Chain: B: PDB Molecule:nicotinamide riboside transporter pnuc;
PDBTitle: crystal structure of the vitamin b3 transporter pnuc
46c2mtpB_
not modelled 18.8 31
PDB header:protein binding/cell adhesion
Chain: B: PDB Molecule:integrin alpha-iib;
PDBTitle: the structure of filamin repeat 21 bound to integrin
47c1m8oA_
not modelled 18.5 31
PDB header:membrane protein
Chain: A: PDB Molecule:platelet integrin alfaiib subunit: cytoplasmic
PDBTitle: platelet integrin alfaiib-beta3 cytoplasmic domain
48c1s4wA_
not modelled 18.5 31
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: nmr structure of the cytoplasmic domain of integrin aiib in2 dpc micelles
49c1dpkA_
not modelled 18.5 31
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib subunit;
PDBTitle: solution structure of the cytoplasmic domain of the2 integrin alpha-iib subunit
50c2rddB_
not modelled 18.0 7
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
51c6agfB_
not modelled 18.0 16
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
52c2m67A_
not modelled 17.2 20
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
53c5aexJ_
not modelled 17.2 18
PDB header:membrane protein
Chain: J: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
54c1ujlA_
not modelled 17.0 18
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h
PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker
55c5xpdA_
not modelled 17.0 14
PDB header:transport protein
Chain: A: PDB Molecule:sugar transporter;
PDBTitle: sugar transporter of atsweet13 in inward-facing state with a substrate2 analog
56c1oy8A_
not modelled 16.8 14
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
57c6i1rA_
not modelled 16.8 9
PDB header:membrane protein
Chain: A: PDB Molecule:cmp-sialic acid transporter 1;
PDBTitle: crystal structure of cmp bound cst in an outward facing conformation
58c6g2jL_
not modelled 16.5 12
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-ubiquinone oxidoreductase chain 5;
PDBTitle: mouse mitochondrial complex i in the active state
59c5n9jC_
not modelled 16.4 21
PDB header:transcription
Chain: C: PDB Molecule:mediator of rna polymerase ii transcription subunit 19;
PDBTitle: core mediator of transcriptional regulation
60c2gfpA_
not modelled 16.1 11
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
61c5xsyB_
not modelled 16.0 3
PDB header:membrane protein
Chain: B: PDB Molecule:voltage-gated sodium channel beta subunit 1;
PDBTitle: structure of the nav1.4-beta1 complex from electric eel
62c6csxA_
not modelled 15.7 14
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux pump subunit acrb;
PDBTitle: single particles cryo-em structure of acrb d407a associated with lipid2 bilayer at 3.0 angstrom
63d2oara1
not modelled 15.5 10
Fold:Gated mechanosensitive channel
Superfamily:Gated mechanosensitive channel
Family:Gated mechanosensitive channel
64d1nekd_
not modelled 15.1 14
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
65c4mt1A_
not modelled 15.0 11
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
66c5yd1B_
not modelled 14.8 12
PDB header:metal transport
Chain: B: PDB Molecule:protein osca1;
PDBTitle: structure of atosca1.1 channel
67c2kluA_
not modelled 14.6 18
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
68c6iu3A_
not modelled 14.6 7
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
69c6buhH_
not modelled 14.4 12
PDB header:membrane protein
Chain: H: PDB Molecule:d-alanyl transfer protein dltb;
PDBTitle: crystal structure of a membrane protein, crystal form ii
70c4rfsS_
not modelled 14.4 20
PDB header:hydrolase, transport protein
Chain: S: PDB Molecule:substrate binding pritein s;
PDBTitle: structure of a pantothenate energy coupling factor transporter
71c6gcs4_
not modelled 14.1 14
PDB header:oxidoreductase
Chain: 4: PDB Molecule:nd4 subunit (nu4m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
72c2l1nA_
not modelled 14.1 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the protein yp_399305.1
73c5v2sA_
not modelled 14.1 23
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
74c2lomA_
not modelled 13.8 17
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1a;
PDBTitle: backbone structure of human membrane protein higd1a
75c5zazA_
not modelled 13.8 17
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
76c2acmA_
not modelled 13.7 38
PDB header:structural protein
Chain: A: PDB Molecule:mucin-1;
PDBTitle: solution structure of the sea domain of human mucin 1 (muc1)
77c4r4mB_
not modelled 13.6 32
PDB header:dna binding protein
Chain: B: PDB Molecule:cgmp-dependent protein kinase 1;
PDBTitle: crystal structure of c42l cgmp dependent protein kinase i alpha (pkgi2 alpha) leucine zipper
78c2micB_
not modelled 13.6 16
PDB header:membrane protein
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
79c2micA_
not modelled 13.6 16
PDB header:membrane protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
80c2djrA_
not modelled 13.5 12
PDB header:metal binding protein
Chain: A: PDB Molecule:zinc finger bed domain-containing protein 2;
PDBTitle: solution structures of the c2h2 type zinc finger domain of2 human zinc finger bed domain containing protein 2
81c4n7wA_
not modelled 13.4 14
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
82c6hwhX_
not modelled 13.3 14
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
83c1zxaB_
not modelled 13.3 31
PDB header:transferase
Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme;
PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia
84c6c14A_
not modelled 13.2 7
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:protocadherin-15;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex
85c5wudA_
not modelled 12.9 18
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structural basis for conductance through tric cation channels
86c6b2zS_
not modelled 12.8 15
PDB header:membrane protein
Chain: S: PDB Molecule:atp synthase subunit j, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
87c6b2zi_
not modelled 12.8 15
PDB header:membrane protein
Chain: I: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
88c2hinA_
not modelled 12.7 35
PDB header:transcription
Chain: A: PDB Molecule:repressor protein;
PDBTitle: structure of n15 cro at 1.05 a: an ortholog of lambda cro2 with a completely different but equally effective3 dimerization mechanism
89c5z62N_
not modelled 12.6 14
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase
90d2cupa3
not modelled 12.5 18
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
91c2n2aA_
not modelled 12.5 25
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
92c5y79A_
not modelled 12.5 14
PDB header:transport protein
Chain: A: PDB Molecule:putative hexose phosphate translocator;
PDBTitle: crystal structure of the triose-phosphate/phosphate translocator in2 complex with 3-phosphoglycerate
93c5oqmm_
not modelled 12.4 14
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
94c6nbxG_
not modelled 12.3 11
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
95c2mkvA_
not modelled 12.2 11
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
96c6m9tA_
not modelled 12.2 17
PDB header:membrane protein
Chain: A: PDB Molecule:prostaglandin e2 receptor ep3 subtype, endolysin chimera;
PDBTitle: crystal structure of ep3 receptor bound to misoprostol-fa
97d1co4a_
not modelled 12.1 16
Fold:Zinc domain conserved in yeast copper-regulated transcription factors
Superfamily:Zinc domain conserved in yeast copper-regulated transcription factors
Family:Zinc domain conserved in yeast copper-regulated transcription factors
98c2e76G_
not modelled 12.0 17
PDB header:photosynthesis
Chain: G: PDB Molecule:cytochrome b6-f complex subunit 5;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
99c2m20B_
not modelled 12.0 19
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below