Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2009_(-)_2258038_2258280
DateMon Aug 5 13:25:11 BST 2019
Unique Job ID3323313d435efc23
SequenceVYSGVVSRTN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:60.821 Y:20.594 Z:46.447
Model (left) based on template c6a7vU_
Top template information
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
Confidence and coverage
Confidence: 99.6% Coverage: 78%
62 residues ( 78% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6a7vU_



99.6 56
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
2c4chgJ_



99.5 100
PDB header:toxin/antitoxin
Chain: J: PDB Molecule:antitoxin vapb15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
3c4chgG_



99.0 100
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:antitoxin vapb15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
4c5vgtA_



71.4 21
PDB header:viral protein
Chain: A: PDB Molecule:gene 7 protein;
PDBTitle: x-ray structure of bacteriophage sf6 tail adaptor protein gp7
5c2m4hA_



54.5 19
PDB header:viral protein
Chain: A: PDB Molecule:feline calicivirus vpg protein;
PDBTitle: solution structure of the core domain (10-76) of the feline2 calicivirus vpg protein
6c2mxdA_



45.7 20
PDB header:viral protein
Chain: A: PDB Molecule:viral protein genome-linked;
PDBTitle: solution structure of vpg of porcine sapovirus
7c1xrxD_



24.1 60
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
8d1xrxa1



24.1 60
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
9c3fmtF_



21.2 60
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
10d2bj7a1



18.3 15
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
11d1jjcb2



15.6 18
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Domains B1 and B5 of PheRS-beta, PheT
12c5odlA_



11.3 23
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: single-stranded dna-binding protein from bacteriophage enc34 in2 complex with ssdna
13c4e0fB_



9.7 41
PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase subunit alpha;
PDBTitle: crystallographic structure of trimeric riboflavin synthase from2 brucella abortus in complex with riboflavin
14d2hzab1



9.3 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
15d2ieaa3



9.2 41
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Transketolase C-terminal domain-like
16c5mu4A_



8.6 32
PDB header:viral protein
Chain: A: PDB Molecule:tail tubular protein a;
PDBTitle: tail tubular protein a of klebsiella pneumoniae bacteriophage kp32
17c1i8dB_



8.2 47
PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase;
PDBTitle: crystal structure of riboflavin synthase
18c1kzlA_



8.1 24
PDB header:transferase
Chain: A: PDB Molecule:riboflavin synthase;
PDBTitle: riboflavin synthase from s.pombe bound to2 carboxyethyllumazine
19c3i1lC_



8.1 33
PDB header:hydrolase
Chain: C: PDB Molecule:hemagglutinin-esterase protein;
PDBTitle: structure of porcine torovirus hemagglutinin-esterase in complex with2 its receptor
20c1q5vB_



7.8 16
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
21d2hzaa1



not modelled 7.7 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
22c6enoA_



not modelled 7.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:dehydratase family protein;
PDBTitle: double cubane cluster oxidoreductase
23c4klkA_



not modelled 7.6 46
PDB header:unknown function
Chain: A: PDB Molecule:phage-related protein duf2815;
PDBTitle: phage-related protein duf2815 from enterococcus faecalis
24c3dpgA_



not modelled 7.6 44
PDB header:hydrolase/dna
Chain: A: PDB Molecule:sgrair restriction enzyme;
PDBTitle: sgrai with noncognate dna bound
25d1i8da2



not modelled 7.4 47
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Riboflavin synthase
26c3l4gL_



not modelled 6.7 24
PDB header:ligase
Chain: L: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: crystal structure of homo sapiens cytoplasmic phenylalanyl-trna2 synthetase
27c4jg2A_



not modelled 6.4 38
PDB header:unknown function
Chain: A: PDB Molecule:phage-related protein;
PDBTitle: structure of phage-related protein from bacillus cereus atcc 10987
28c2vxzA_



not modelled 6.2 23
PDB header:viral protein
Chain: A: PDB Molecule:pyrsv_gp04;
PDBTitle: crystal structure of hypothetical protein pyrsv_gp04 from pyrobaculum2 spherical virus
29c2bj3D_



not modelled 5.8 15
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
30c5n6nC_



not modelled 5.7 21
PDB header:signaling protein
Chain: C: PDB Molecule:neutral trehalase;
PDBTitle: crystal structure of the 14-3-3:neutral trehalase nth1 complex
31d1uerc2



not modelled 5.6 36
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
32c5m4aA_



not modelled 5.5 21
PDB header:hydrolase
Chain: A: PDB Molecule:neutral trehalase;
PDBTitle: neutral trehalase nth1 from saccharomyces cerevisiae in complex with2 trehalose
33c2m1bA_



not modelled 5.4 40
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulatory protein, c terminal family
PDBTitle: solution structure of the chxr dna-binding domain
34c2ns5A_



not modelled 5.1 25
PDB header:signaling protein
Chain: A: PDB Molecule:partitioning-defective 3 homolog;
PDBTitle: the conserved n-terminal domain of par-3 adopts a novel pb1-2 like structure required for par-3 oligomerization and3 apical membrane localization
35d1kzla2



not modelled 5.1 24
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Riboflavin synthase
36c1yx5A_



not modelled 5.1 40
PDB header:hydrolase
Chain: A: PDB Molecule:26s proteasome non-atpase regulatory subunit 4;
PDBTitle: solution structure of s5a uim-1/ubiquitin complex
37d1ma1a2



not modelled 5.1 44
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain

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