Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2012_(-)_2259334_2259828
DateMon Aug 5 13:25:12 BST 2019
Unique Job IDc2448e89b3173845
SequenceMLSKSKRSCR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.070 Y:40.588 Z:35.143
Model (left) based on template d2hh8a1
Top template information
Fold:YdfO-like
Superfamily:YdfO-like
Family:YdfO-like
Confidence and coverage
Confidence: 99.9% Coverage: 72%
118 residues ( 72% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2hh8a1
99.9 17
Fold:YdfO-like
Superfamily:YdfO-like
Family:YdfO-like
2c2qlxA_
58.8 20
PDB header:isomerase
Chain: A: PDB Molecule:l-rhamnose mutarotase;
PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose
3c2qlwA_
58.8 20
PDB header:isomerase
Chain: A: PDB Molecule:rhau;
PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum
4c6hhnA_
58.6 20
PDB header:isomerase
Chain: A: PDB Molecule:l-rhamnose mutarotase;
PDBTitle: crystal structure of l-rhamnose mutarotase fa22100 from formosa2 agariphila
5c6gzuA_
40.9 30
PDB header:transferase
Chain: A: PDB Molecule:conserved membrane protein;
PDBTitle: structure of chlamydia abortus effector protein chladub
6d1x8da1
34.3 26
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:YiiL-like
7c1irjG_
32.5 27
PDB header:metal binding protein
Chain: G: PDB Molecule:migration inhibitory factor-related protein 14;
PDBTitle: crystal structure of the mrp14 complexed with chaps
8c1sn9D_
31.2 41
PDB header:de novo protein
Chain: D: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
9c1sn9C_
31.2 41
PDB header:de novo protein
Chain: C: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
10c1sn9A_
31.2 41
PDB header:de novo protein
Chain: A: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
11c1sn9B_
31.2 41
PDB header:de novo protein
Chain: B: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
12d1j55a_
21.0 28
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
13c3h4sE_
20.8 22
PDB header:motor protein/calcium binding protein
Chain: E: PDB Molecule:kcbp interacting ca2+-binding protein;
PDBTitle: structure of the complex of a mitotic kinesin with its2 calcium binding regulator
14d1m39a_
20.2 23
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
15c2m0rA_
19.0 15
PDB header:metal binding protein
Chain: A: PDB Molecule:protein s100-a14;
PDBTitle: solution structure and dynamics of human s100a14
16d1k8ua_
18.8 15
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
17c1ponB_
18.5 36
PDB header:calcium-binding protein
Chain: B: PDB Molecule:troponin c;
PDBTitle: site iii-site iv troponin c heterodimer, nmr
18c4il1A_
18.5 27
PDB header:hydrolase
Chain: A: PDB Molecule:calmodulin, calcineurin subunit b type 1, serine/threonine-
PDBTitle: crystal structure of the rat calcineurin
19c4pcwD_
18.3 19
PDB header:metal binding protein
Chain: D: PDB Molecule:filaggrin;
PDBTitle: crystal structure of the n-terminal domain of human profilaggrin at2 2.2 a resolution
20d1xk4c1
18.2 27
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
21c2aucC_
not modelled 17.5 17
PDB header:membrane protein
Chain: C: PDB Molecule:myosin a tail interacting protein;
PDBTitle: structure of the plasmodium mtip-myoa complex, a key component of the2 parasite invasion motor
22d1c7va_
not modelled 17.0 14
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
23c4pl8H_
not modelled 16.8 38
PDB header:contractile protein/structural protein
Chain: H: PDB Molecule:thymosin beta-4,protein cordon-bleu,thymosin beta-4;
PDBTitle: structure of rabbit skeletal muscle actin in complex with a hybrid2 peptide comprising thymosin beta4 and the lysine-rich region of3 cordon-bleu
24c3vnnA_
not modelled 16.5 15
PDB header:ligase
Chain: A: PDB Molecule:dna ligase 4;
PDBTitle: crystal structure of a sub-domain of the nucleotidyltransferase2 (adenylation) domain of human dna ligase iv
25d3elga1
not modelled 16.3 21
Fold:BLIP-like
Superfamily:BT0923-like
Family:BT0923-like
26d2imja1
not modelled 15.6 26
Fold:Cystatin-like
Superfamily:NTF2-like
Family:PFL3262-like
27c5x2eA_
not modelled 15.4 14
PDB header:cell adhesion
Chain: A: PDB Molecule:tegumental protein 20.8 kda;
PDBTitle: crystal structure of calmodulin like domain of cstal3 (1-81aa)
28c2x5cB_
not modelled 15.1 26
PDB header:viral protein
Chain: B: PDB Molecule:hypothetical protein orf131;
PDBTitle: crystal structure of hypothetical protein orf131 from pyrobaculum2 spherical virus
29c4zuaA_
not modelled 15.1 22
PDB header:transcription
Chain: A: PDB Molecule:exoenzyme s synthesis regulatory protein exsa;
PDBTitle: crystal structure of the exsa regulatory domain
30c2lv7A_
not modelled 15.0 29
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 7;
PDBTitle: solution structure of ca2+-bound cabp7 n-terminal doman
31d1ttea1
not modelled 14.8 43
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
32d4icba_
not modelled 14.6 28
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calbindin D9K
33c2vrgA_
not modelled 14.3 17
PDB header:transport
Chain: A: PDB Molecule:multiple coagulation factor deficiency protein 2;
PDBTitle: structure of human mcfd2
34d1r2ua_
not modelled 14.2 23
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
35c3b5xB_
not modelled 14.2 11
PDB header:membrane protein
Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of msba from vibrio cholerae
36c2ldyA_
not modelled 14.2 11
PDB header:rna binding protein
Chain: A: PDB Molecule:orf1 codes for a 40 kda product;
PDBTitle: solution structure of the rmm-ctd domains of human line-1 orf1p
37c3fs7D_
not modelled 13.8 27
PDB header:metal binding protein
Chain: D: PDB Molecule:parvalbumin, thymic;
PDBTitle: crystal structure of gallus gallus beta-parvalbumin (avian thymic2 hormone)
38c3jbhI_
not modelled 13.6 9
PDB header:contractile protein
Chain: I: PDB Molecule:myosin 2 essential light chain striated muscle;
PDBTitle: two heavy meromyosin interacting-heads motifs flexible docked into2 tarantula thick filament 3d-map allows in depth study of intra- and3 intermolecular interactions
39d2pq3a1
not modelled 13.4 27
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
40c1zmzA_
not modelled 13.0 9
PDB header:structural protein
Chain: A: PDB Molecule:centrin-2;
PDBTitle: solution structure of the n-terminal domain (m1-s98) of2 human centrin 2
41d1xk4a1
not modelled 13.0 15
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
42c6b12B_
not modelled 12.9 41
PDB header:antimicrobial protein
Chain: B: PDB Molecule:tni2;
PDBTitle: structure of tne2 in complex with tni2
43c3l23A_
not modelled 12.8 25
PDB header:isomerase
Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution
44d1wrka1
not modelled 12.8 19
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
45d2obha1
not modelled 12.5 23
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
46c2kluA_
not modelled 12.3 35
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
47d1m45a_
not modelled 12.2 24
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
48d1wlza1
not modelled 12.1 14
Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
49c5tbyC_
not modelled 12.1 17
PDB header:contractile protein
Chain: C: PDB Molecule:myosin light chain 3;
PDBTitle: human beta cardiac heavy meromyosin interacting-heads motif obtained2 by homology modeling (using swiss-model) of human sequence from3 aphonopelma homology model (pdb-3jbh), rigidly fitted to human beta-4 cardiac negatively stained thick filament 3d-reconstruction (emd-5 2240)
50d1fw4a_
not modelled 12.1 18
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
51c6ozdB_
not modelled 12.0 18
PDB header:structural genomics
Chain: B: PDB Molecule:putative exported protein;
PDBTitle: crystal structure of putative exported protein (bpss2145) from2 burkholderia pseudomallei k96243
52c1ozsA_
not modelled 12.0 16
PDB header:structural protein
Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles;
PDBTitle: c-domain of human cardiac troponin c in complex with the2 inhibitory region of human cardiac troponin i
53c2kaxA_
not modelled 11.9 15
PDB header:metal binding protein
Chain: A: PDB Molecule:protein s100-a5;
PDBTitle: solution structure and dynamics of s100a5 in the apo and2 ca2+ -bound states
54c2rgiA_
not modelled 11.8 23
PDB header:metal binding protein
Chain: A: PDB Molecule:protein s100-a2;
PDBTitle: crystal structure of ca2+-free s100a2 at 1.6 a resolution
55c3lcpC_
not modelled 11.7 18
PDB header:protein binding
Chain: C: PDB Molecule:multiple coagulation factor deficiency protein 2;
PDBTitle: crystal structure of the carbohydrate recognition domain of lman1 in2 complex with mcfd2
56c2m28A_
not modelled 11.6 18
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 4;
PDBTitle: nmr structure of ca2+ bound cabp4 c-domain
57d1yuta1
not modelled 11.4 16
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
58c1wlzD_
not modelled 11.3 14
PDB header:unknown function
Chain: D: PDB Molecule:cap-binding protein complex interacting protein
PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis
59c2m1uA_
not modelled 11.3 25
PDB header:contractile protein
Chain: A: PDB Molecule:myosin light chain mlcb;
PDBTitle: solution structure of the small dictyostelium discoideium myosin light2 chain mlcb provides insights into iq-motif recognition of class i3 myosin myo1b
60d3d37a1
not modelled 11.2 17
Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
61c2kn2A_
not modelled 11.2 18
PDB header:metal binding protein
Chain: A: PDB Molecule:calmodulin;
PDBTitle: solution structure of the c-terminal domain of soybean calmodulin2 isoform 4 fused with the calmodulin-binding domain of ntmkp1
62d1e8aa_
not modelled 11.2 28
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
63d1dtla_
not modelled 10.8 18
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
64d1n0yb_
not modelled 10.8 15
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
65c3obeB_
not modelled 10.7 33
PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution
66c5mkkB_
not modelled 10.6 18
PDB header:transport protein
Chain: B: PDB Molecule:multidrug resistance abc transporter atp-binding and
PDBTitle: crystal structure of the heterodimeric abc transporter tmrab, a2 homolog of the antigen translocation complex tap
67d1pvaa_
not modelled 10.6 26
Fold:EF Hand-like
Superfamily:EF-hand
Family:Parvalbumin
68c2k2aA_
not modelled 10.5 32
PDB header:contractile protein
Chain: A: PDB Molecule:troponin c;
PDBTitle: solution structure of the apo c terminal domain of lethocerus troponin2 c isoform f1
69c2pmyB_
not modelled 10.5 33
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ras and ef-hand domain-containing protein;
PDBTitle: ef-hand domain of human rasef
70c2derA_
not modelled 10.1 22
PDB header:transferase/rna
Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma;
PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state
71c2qdrA_
not modelled 10.1 19
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative dioxygenase (npun_f5605) from nostoc2 punctiforme pcc 73102 at 2.60 a resolution
72c2k7bA_
not modelled 9.9 18
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 1;
PDBTitle: nmr structure of mg2+-bound cabp1 n-domain
73d1ksoa_
not modelled 9.9 12
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
74d5pala_
not modelled 9.8 33
Fold:EF Hand-like
Superfamily:EF-hand
Family:Parvalbumin
75c2m97A_
not modelled 9.8 19
PDB header:metal binding protein
Chain: A: PDB Molecule:optimized ratiometric calcium sensor;
PDBTitle: optimized ratiometric calcium sensors for functional in vivo imaging2 of neurons and t-lymphocytes
76c1eg4A_
not modelled 9.7 15
PDB header:structural protein
Chain: A: PDB Molecule:dystrophin;
PDBTitle: structure of a dystrophin ww domain fragment in complex2 with a beta-dystroglycan peptide
77c6cciA_
not modelled 9.7 31
PDB header:transferase
Chain: A: PDB Molecule:protein eskimo 1;
PDBTitle: the crystal structure of xoat1
78c2l0vB_
not modelled 9.6 29
PDB header:metal binding protein
Chain: B: PDB Molecule:protein s100-a16;
PDBTitle: solution structure of calcium(ii) bound s100a16
79d1jc2a_
not modelled 9.6 19
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
80c1jc2A_
not modelled 9.6 19
PDB header:structural protein
Chain: A: PDB Molecule:troponin c, skeletal muscle;
PDBTitle: complex of the c-domain of troponin c with residues 1-40 of2 troponin i
81c5ve9B_
not modelled 9.5 33
PDB header:protein binding
Chain: B: PDB Molecule:microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;
PDBTitle: structure of hacf7 ef1-ef2-gar domains
82c2m29A_
not modelled 9.5 18
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 4;
PDBTitle: nmr structure of ca2+ bound cabp4 n-domain
83c4fq5B_
not modelled 9.5 21
PDB header:isomerase
Chain: B: PDB Molecule:maleate cis-trans isomerase;
PDBTitle: crystal structure of the maleate isomerase iso(c200a) from pseudomonas2 putida s16 with maleate
84c2amiA_
not modelled 9.4 16
PDB header:cell cycle
Chain: A: PDB Molecule:caltractin;
PDBTitle: solution structure of the calcium-loaded n-terminal sensor domain of2 centrin
85d1f53a_
not modelled 9.4 19
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Killer toxin-like protein SKLP
86d1k9ua_
not modelled 9.3 15
Fold:EF Hand-like
Superfamily:EF-hand
Family:Polcalcin
87d1topa_
not modelled 9.2 23
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
88c2vtgA_
not modelled 9.2 14
PDB header:metal-binding protein
Chain: A: PDB Molecule:ionized calcium-binding adapter molecule 2;
PDBTitle: crystal structure of human iba2, trigonal crystal form
89c2e75C_
not modelled 9.2 55
PDB header:photosynthesis
Chain: C: PDB Molecule:apocytochrome f;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
90c2ggmA_
not modelled 9.2 23
PDB header:cell cycle
Chain: A: PDB Molecule:centrin-2;
PDBTitle: human centrin 2 xeroderma pigmentosum group c protein2 complex
91d1qx2a_
not modelled 9.1 20
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calbindin D9K
92d1ggza_
not modelled 9.1 23
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
93c3ox6C_
not modelled 9.1 18
PDB header:calcium binding protein
Chain: C: PDB Molecule:calcium-binding protein 1;
PDBTitle: crystal structure of the calcium sensor calcium-binding protein 12 (cabp1)
94d3e46a1
not modelled 9.1 60
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
95d2f3ga_
not modelled 9.0 22
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
96d1tiza_
not modelled 8.8 18
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
97d1oqpa_
not modelled 8.7 7
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
98d1br1b_
not modelled 8.6 18
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
99d1qlka_
not modelled 8.6 28
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins

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