Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2013_(-)_2260673_2261152
DateMon Aug 5 13:25:12 BST 2019
Unique Job ID1addd0278fc39ccd
SequenceVDTLLEAGIT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.804 Y:30.355 Z:29.844
Model (left) based on template d1hjra_
Top template information
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:RuvC resolvase
Confidence and coverage
Confidence: 68.9% Coverage: 31%
49 residues ( 31% of your sequence) have been modelled with 68.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1hjra_



68.9 20
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:RuvC resolvase
2c4ep5A_



62.2 32
PDB header:hydrolase
Chain: A: PDB Molecule:crossover junction endodeoxyribonuclease ruvc;
PDBTitle: thermus thermophilus ruvc structure
3d2fi0a1



59.5 21
Fold:SP0561-like
Superfamily:SP0561-like
Family:SP0561-like
4d2ozbb1



54.8 11
Fold:Nop domain
Superfamily:Nop domain
Family:Nop domain
5d1y81a1



53.2 33
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
6c3ff4A_



47.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
7c2duwA_



42.5 40
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
8d2d59a1



41.6 40
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
9d1a9xa3



36.1 25
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
10c5xavB_



35.2 27
PDB header:biosynthetic protein
Chain: B: PDB Molecule:intracellular polyhydroxyalkanoate synthase;
PDBTitle: structure of phac from chromobacterium sp. usm2
11c5t6oA_



31.2 40
PDB header:biosynthetic protein
Chain: A: PDB Molecule:poly-beta-hydroxybuterate polymerase;
PDBTitle: structure of the catalytic domain of the class i polyhydroxybutyrate2 synthase from cupriavidus necator
12c5o9zH_



26.4 11
PDB header:splicing
Chain: H: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp31;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
13c5dotA_



25.9 25
PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 apo form
14c5douC_



23.6 25
PDB header:ligase
Chain: C: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
15c4as2D_



22.9 50
PDB header:hydrolase
Chain: D: PDB Molecule:phosphorylcholine phosphatase;
PDBTitle: pseudomonas aeruginosa phosphorylcholine phosphatase. monoclinic form
16d1iuka_



22.2 31
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
17c5axwA_



20.9 18
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)
18c4gxtA_



19.9 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:a conserved functionally unknown protein;
PDBTitle: the crystal structure of a conserved functionally unknown protein from2 anaerococcus prevotii dsm 20548
19c3deeA_



17.1 7
PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein;
PDBTitle: crystal structure of a putative regulatory protein involved in2 transcription (ngo1945) from neisseria gonorrhoeae fa 1090 at 2.25 a3 resolution
20c4e17B_



16.8 25
PDB header:cell adhesion
Chain: B: PDB Molecule:catenin alpha-1;
PDBTitle: alpha-e-catenin is an autoinhibited molecule that co-activates2 vinculin
21c3icxB_



not modelled 16.1 22
PDB header:rna binding protein
Chain: B: PDB Molecule:pre mrna splicing protein;
PDBTitle: crystal structure of sulfolobus solfataricus nop5 (135-380)
22c2c9lZ_



not modelled 14.6 17
PDB header:viral protein
Chain: Z: PDB Molecule:bzlf1 trans-activator protein;
PDBTitle: structure of the epstein-barr virus zebra protein
23c6cfzF_



not modelled 12.0 12
PDB header:nuclear protein
Chain: F: PDB Molecule:dad1,dad1;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
24c4i2nC_



not modelled 11.5 19
PDB header:hydrolase
Chain: C: PDB Molecule:intracellular protease/amidase;
PDBTitle: crystal structure of 31kd heat shock protein, vchsp31 from vibrio2 cholerae
25d1a9xa4



not modelled 11.2 19
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
26c5ig9H_



not modelled 10.6 6
PDB header:ligase
Chain: H: PDB Molecule:atp grasp ligase;
PDBTitle: crystal structure of macrocyclase mdnc bound with precursor peptide2 mdna from microcystis aeruginosa mrc
27c2rauA_



not modelled 10.4 33
PDB header:hydrolase
Chain: A: PDB Molecule:putative esterase;
PDBTitle: crystal structure of a putative lipase (np_343859.1) from sulfolobus2 solfataricus at 1.85 a resolution
28c3id6A_



not modelled 10.1 22
PDB header:transferase
Chain: A: PDB Molecule:pre mrna splicing protein;
PDBTitle: crystal structure of sulfolobus solfataricus nop5 (1-262) and2 fibrillarin complex
29c5xr2D_



not modelled 8.9 40
PDB header:chaperone
Chain: D: PDB Molecule:protein/nucleic acid deglycase hcha;
PDBTitle: sav0551
30c4e18B_



not modelled 8.7 25
PDB header:cell adhesion
Chain: B: PDB Molecule:catenin alpha-1;
PDBTitle: alpha-e-catenin is an autoinhibited molecule that co-activates2 vinculin
31c6nd4b_



not modelled 8.7 16
PDB header:ribosome
Chain: B: PDB Molecule:
PDBTitle: conformational switches control early maturation of the eukaryotic2 small ribosomal subunit
32c2lyhA_



not modelled 8.6 12
PDB header:dna binding protein
Chain: A: PDB Molecule:fanconi anemia-associated protein of 24 kda;
PDBTitle: structure of faap24 residues 141-215
33c6ewvA_



not modelled 8.3 53
PDB header:peptide binding protein
Chain: A: PDB Molecule:nrps kj12c-ndd, nrps kj12b-cdd;
PDBTitle: solution structure of docking domain complex of rxp nrps: kj12c ndd -2 kj12b cdd
34d2csua1



not modelled 7.7 20
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
35c2nnwC_



not modelled 7.5 13
PDB header:transferase
Chain: C: PDB Molecule:nop5/nop56 related protein;
PDBTitle: alternative conformations of nop56/58-fibrillarin complex and2 implication for induced-fit assenly of box c/d rnps
36c3id5E_



not modelled 7.5 22
PDB header:transferase/ribosomal protein/rna
Chain: E: PDB Molecule:pre mrna splicing protein;
PDBTitle: crystal structure of sulfolobus solfataricus c/d rnp assembled with2 nop5, fibrillarin, l7ae and a split half c/d rna
37d1n57a_



not modelled 6.8 27
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
38d2aq0a1



not modelled 6.6 13
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
39c5ganF_



not modelled 6.4 14
PDB header:transcription
Chain: F: PDB Molecule:pre-mrna-processing factor 31;
PDBTitle: the overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp at2 3.7 angstrom
40c5ig8A_



not modelled 6.3 13
PDB header:ligase
Chain: A: PDB Molecule:atp grasp ligase;
PDBTitle: crystal structure of macrocyclase mdnb from microcystis aeruginosa mrc
41c5kstA_



not modelled 6.2 44
PDB header:hydrolase
Chain: A: PDB Molecule:5'-nucleotidase sure;
PDBTitle: stationary phase survival protein e (sure) from xylella fastidiosa-2 xfsure-tsamp (tetramer smaller - crystallization with 3'amp).
42c4qeaG_



not modelled 6.2 19
PDB header:hydrolase
Chain: G: PDB Molecule:5'-nucleotidase sure;
PDBTitle: crystal structure of stationary phase survival protein (sure) from2 brucella abortus
43c1qgeD_



not modelled 5.6 27
PDB header:hydrolase
Chain: D: PDB Molecule:protein (triacylglycerol hydrolase);
PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase
44c3l3bA_



not modelled 5.5 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:es1 family protein;
PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution
45c3gr1A_



not modelled 5.0 11
PDB header:membrane protein
Chain: A: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-392)

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