Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2019_(-)_2265997_2266413
DateMon Aug 5 13:25:12 BST 2019
Unique Job ID5a468c6bd7f94acf
SequenceLQPDRNLLAD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.990 Y:34.846 Z:35.602
Model (left) based on template c6b3aA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:apra methyltransferase 1;
PDBTitle: apra methyltransferase 1 - gnat didomain in complex with mn2+ and sam
Confidence and coverage
Confidence: 47.3% Coverage: 46%
63 residues ( 46% of your sequence) have been modelled with 47.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6b3aA_



47.3 22
PDB header:transferase
Chain: A: PDB Molecule:apra methyltransferase 1;
PDBTitle: apra methyltransferase 1 - gnat didomain in complex with mn2+ and sam
2d1o4wa_



38.3 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
3c1x31D_



35.4 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:sarcosine oxidase delta subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
4c3tdmD_



30.5 7
PDB header:de novo protein
Chain: D: PDB Molecule:computationally designed two-fold symmetric tim-barrel
PDBTitle: computationally designed tim-barrel protein, halfflr
5c4hh3C_



28.6 17
PDB header:flavoprotein/transcription
Chain: C: PDB Molecule:appa protein;
PDBTitle: structure of the appa-ppsr2 core complex from rb. sphaeroides
6c3whpA_



28.5 18
PDB header:gene regulation
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of the c-terminal domain of themus thermophilus litr2 in complex with cobalamin
7c1y80A_



28.1 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted cobalamin binding protein;
PDBTitle: structure of a corrinoid (factor iiim)-binding protein from moorella2 thermoacetica
8d1ng7a_



25.8 24
Fold:Soluble domain of poliovirus core protein 3a
Superfamily:Soluble domain of poliovirus core protein 3a
Family:Soluble domain of poliovirus core protein 3a
9c1ng7A_



25.8 24
PDB header:viral protein
Chain: A: PDB Molecule:genome polyprotein [core protein p3a];
PDBTitle: the solution structure of the soluble domain of poliovirus2 3a protein
10c5yz4A_



24.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
11c6hlwB_



22.5 32
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-a71 (fusion protein)
12c6ei9A_



22.1 17
PDB header:flavoprotein
Chain: A: PDB Molecule:trna-dihydrouridine synthase b;
PDBTitle: crystal structure of e. coli trna-dihydrouridine synthase b (dusb)
13c6hltD_



21.2 21
PDB header:viral protein
Chain: D: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of rhinovirus-14 (hrv14)
14c4k3zA_



21.0 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-erythrulose 4-phosphate dehydrogenase;
PDBTitle: crystal structure of d-erythrulose 4-phosphate dehydrogenase from2 brucella melitensis, solved by iodide sad
15c2hu4D_



19.5 46
PDB header:hydrolase
Chain: D: PDB Molecule:neuraminidase;
PDBTitle: n1 neuraminidase in complex with oseltamivir 2
16c4hzvA_



19.0 37
PDB header:hydrolase
Chain: A: PDB Molecule:neuraminidase;
PDBTitle: the crystal structure of influenza a neuraminidase n3
17c6hmvB_



18.4 21
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-d68 (fusion protein, lvvy mutant)
18c4zm6A_



16.3 16
PDB header:hydrolase, transferase
Chain: A: PDB Molecule:n-acetyl-beta-d glucosaminidase;
PDBTitle: a unique gcn5-related glucosamine n-acetyltransferase region exist in2 the fungal multi-domain gh3 beta-n-acetylglucosaminidase
19d2cyga1



16.2 11
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
20c4omhA_



15.9 30
PDB header:lyase
Chain: A: PDB Molecule:geranylgeranyl diphosphate cyclase;
PDBTitle: crystal structure of the bacterial diterpene cyclase cotb2 variant2 f149l
21c4qn3B_



not modelled 15.5 46
PDB header:hydrolase
Chain: B: PDB Molecule:neuraminidase;
PDBTitle: crystal structure of neuraminidase n7
22c2i2xD_



not modelled 14.8 19
PDB header:transferase
Chain: D: PDB Molecule:methyltransferase 1;
PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri
23c2htuA_



not modelled 14.8 46
PDB header:hydrolase
Chain: A: PDB Molecule:neuraminidase;
PDBTitle: n8 neuraminidase in complex with peramivir
24d1vhna_



not modelled 14.2 13
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
25d3bula2



not modelled 13.7 19
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
26c4b7qD_



not modelled 12.7 38
PDB header:hydrolase
Chain: D: PDB Molecule:neuraminidase;
PDBTitle: h1n1 2009 pandemic influenza virus: resistance of the i223r2 neuraminidase mutant explained by kinetic and structural analysis
27d1f8ea_



not modelled 12.5 31
Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
28d1ft8a2



not modelled 12.3 14
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Non-canonical RBD domain
29c4k3yA_



not modelled 12.3 15
PDB header:viral protein
Chain: A: PDB Molecule:neuraminidase;
PDBTitle: crystal structure of a subtype n11 neuraminidase-like protein of2 a/flat-faced bat/peru/033/2010 (h18n11)
30c5aheA_



not modelled 12.2 9
PDB header:isomerase
Chain: A: PDB Molecule:
PDBTitle: crystal structure of salmonella enterica hisa
31c3salB_



not modelled 12.2 38
PDB header:hydrolase
Chain: B: PDB Molecule:neuraminidase;
PDBTitle: crystal structure of influenza a virus neuraminidase n5
32d1vk3a4



not modelled 11.9 24
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
33c1nmbN_



not modelled 11.9 31
PDB header:complex (hydrolase/immunoglobulin)
Chain: N: PDB Molecule:n9 neuraminidase;
PDBTitle: the structure of a complex between the nc10 antibody and influenza2 virus neuraminidase and comparison with the overlapping binding site3 of the nc41 antibody
34c2qezC_



not modelled 11.8 18
PDB header:lyase
Chain: C: PDB Molecule:ethanolamine ammonia-lyase heavy chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase heavy chain2 (yp_013784.1) from listeria monocytogenes 4b f2365 at 2.15 a3 resolution
35c3i8oA_



not modelled 11.6 17
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
36c4fvkA_



not modelled 11.5 22
PDB header:hydrolase
Chain: A: PDB Molecule:neuraminidase;
PDBTitle: structural and functional characterization of neuraminidase-like2 molecule n10 derived from bat influenza a virus
37c6crdG_



not modelled 11.2 31
PDB header:viral protein/hydrolase
Chain: G: PDB Molecule:tetrabrachion,neuraminidase;
PDBTitle: influenza virus neuraminidase subtype n9 (tern) with tetrabrachion2 (tb) domain stalk
38c2yxbA_



not modelled 10.7 20
PDB header:isomerase
Chain: A: PDB Molecule:coenzyme b12-dependent mutase;
PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
39c4jgiB_



not modelled 10.5 14
PDB header:protein binding
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: 1.5 angstrom crystal structure of a novel cobalamin-binding protein2 from desulfitobacterium hafniense dcb-2
40c2ltmA_



not modelled 10.5 17
PDB header:electron transport
Chain: A: PDB Molecule:nfu1 iron-sulfur cluster scaffold homolog, mitochondrial;
PDBTitle: solution nmr structure of nfu1 iron-sulfur cluster scaffold homolog2 from homo sapiens, northeast structural genomics consortium (nesg)3 target hr2876b
41c1w21D_



not modelled 10.2 28
PDB header:hydrolase
Chain: D: PDB Molecule:neuraminidase;
PDBTitle: structure of neuraminidase from english duck subtype n6 complexed with2 30 mm sialic acid (nana, neu5ac), crystal soaked for 43 hours at 2913 k.
42c5c4nD_



not modelled 9.8 12
PDB header:oxidoreductase
Chain: D: PDB Molecule:precorrin-6a reductase;
PDBTitle: cobk precorrin-6a reductase
43c2penE_



not modelled 9.6 17
PDB header:chaperone
Chain: E: PDB Molecule:orf134;
PDBTitle: crystal structure of rbcx, crystal form i
44d2peqa1



not modelled 9.6 17
Fold:RbcX-like
Superfamily:RbcX-like
Family:RbcX-like
45d1gtea2



not modelled 9.1 16
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
46d1ccwa_



not modelled 8.8 16
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
47c4ot7A_



not modelled 8.5 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase;
PDBTitle: x-structure of a variant of ncr from zymomonas mobilis
48d1zhva2



not modelled 7.9 35
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Atu0741-like
49d2aepa1



not modelled 7.5 33
Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
50c2iw0A_



not modelled 7.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum
51d1tr9a_



not modelled 7.3 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:NagZ-like
52c3tiaC_



not modelled 7.2 46
PDB header:hydrolase/hydrolase inhibitor
Chain: C: PDB Molecule:neuraminidase;
PDBTitle: crystal structure of 1957 pandemic h2n2 neuraminidase complexed with2 laninamivir
53d1ivga_



not modelled 7.2 46
Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
54c4hh0B_



not modelled 7.1 14
PDB header:flavoprotein,signaling protein
Chain: B: PDB Molecule:appa protein;
PDBTitle: dark-state structure of appa c20s without the cys-rich region from rb.2 sphaeroides
55d1iyjb1



not modelled 7.1 17
Fold:BRCA2 helical domain
Superfamily:BRCA2 helical domain
Family:BRCA2 helical domain
56c3ezxA_



not modelled 7.1 19
PDB header:transferase
Chain: A: PDB Molecule:monomethylamine corrinoid protein 1;
PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein
57c6jdjC_



not modelled 6.8 32
PDB header:hydrolase/hydrolase inhibitor
Chain: C: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of acriic2 dimer in complex with partial nme1cas9
58c5zknA_



not modelled 6.7 14
PDB header:isomerase
Chain: A: PDB Molecule:putative n-acetylmannosamine-6-phosphate 2-epimerase;
PDBTitle: structure of n-acetylmannosamine-6-phosphate 2-epimerase from2 fusobacterium nucleatum
59c5ncdA_



not modelled 6.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan n-acetylglucosamine deacetylase;
PDBTitle: crystal structure of the polysaccharide deacetylase bc1974 from2 bacillus cereus in complex with (2s)-2-amino-5-3 (diaminomethylideneamino)-n-hydroxypentanamide
60d2py8a1



not modelled 6.5 21
Fold:RbcX-like
Superfamily:RbcX-like
Family:RbcX-like
61c4alzA_



not modelled 6.5 17
PDB header:membrane protein
Chain: A: PDB Molecule:yop proteins translocation protein d;
PDBTitle: the yersinia t3ss basal body component yscd reveals a different2 structural periplasmatic domain organization to known homologue prgh
62d1euca1



not modelled 6.2 11
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
63c3nmeA_



not modelled 6.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:sex4 glucan phosphatase;
PDBTitle: structure of a plant phosphatase
64d2ggpb1



not modelled 6.0 19
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
65d1fmfa_



not modelled 5.9 18
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
66d1xhba2



not modelled 5.8 4
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
67c2hxgB_



not modelled 5.8 5
PDB header:isomerase
Chain: B: PDB Molecule:l-arabinose isomerase;
PDBTitle: crystal structure of mn2+ bound ecai
68c4g6cA_



not modelled 5.8 8
PDB header:hydrolase
Chain: A: PDB Molecule:beta-hexosaminidase 1;
PDBTitle: crystal structure of beta-hexosaminidase 1 from burkholderia2 cenocepacia j2315
69c4kdiC_



not modelled 5.8 21
PDB header:signaling protein/hydrolase
Chain: C: PDB Molecule:ubiquitin thioesterase otu1;
PDBTitle: crystal structure of p97/vcp n in complex with otu1 ubxl
70c3g5lA_



not modelled 5.8 14
PDB header:transferase
Chain: A: PDB Molecule:putative s-adenosylmethionine dependent methyltransferase;
PDBTitle: crystal structure of putative s-adenosylmethionine dependent2 methyltransferase from listeria monocytogenes
71c2dc1A_



not modelled 5.8 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate dehydrogenase;
PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus
72d1koha2



not modelled 5.7 15
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Non-canonical RBD domain
73c4mj7B_



not modelled 5.6 19
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
74c1bmtB_



not modelled 5.6 19
PDB header:methyltransferase
Chain: B: PDB Molecule:methionine synthase;
PDBTitle: how a protein binds b12: a 3.o angstrom x-ray structure of2 the b12-binding domains of methionine synthase
75c5jpqd_



not modelled 5.6 14
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
76c2y8uA_



not modelled 5.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: a. nidulans chitin deacetylase
77c4r9xB_



not modelled 5.4 10
PDB header:metal transport
Chain: B: PDB Molecule:copper homeostasis protein cutc;
PDBTitle: crystal structure of putative copper homeostasis protein cutc from2 bacillus anthracis
78c3a9lB_



not modelled 5.3 12
PDB header:hydrolase
Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase;
PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase
79c4gr2A_



not modelled 5.3 20
PDB header:chaperone
Chain: A: PDB Molecule:atrbcx1;
PDBTitle: structure of atrbcx1 from arabidopsis thaliana.
80c3pl0B_



not modelled 5.2 36
PDB header:biosynthetic protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a bsma homolog (mpe_a2762) from methylobium2 petroleophilum pm1 at 1.91 a resolution
81c2py8B_



not modelled 5.2 14
PDB header:chaperone
Chain: B: PDB Molecule:hypothetical protein rbcx;
PDBTitle: rbcx
82c1mjeA_



not modelled 5.2 17
PDB header:gene regulation/antitumor protein/dna
Chain: A: PDB Molecule:breast cancer 2;
PDBTitle: structure of a brca2-dss1-ssdna complex
83c5z34A_



not modelled 5.1 9
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: the structure of a chitin deacetylase from bombyx mori provide the2 first insight into insect chitin deacetylation mechanism
84d2axpa1



not modelled 5.1 54
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
85c1mbbA_



not modelled 5.1 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:uridine diphospho-n-acetylenolpyruvylglucosamine
PDBTitle: oxidoreductase

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