Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2022c_(-)_2267127_2267732
DateMon Aug 5 13:25:13 BST 2019
Unique Job ID2709157a58773cc9
SequenceVNVPWENAHG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.901 Y:39.574 Z:36.382
Model (left) based on template c2kheA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:toxin-like protein;
PDBTitle: solution structure of the bacterial toxin rele from thermus2 thermophilus hb8
Confidence and coverage
Confidence: 97.6% Coverage: 42%
85 residues ( 42% of your sequence) have been modelled with 97.6% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2kheA_
97.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:toxin-like protein;
PDBTitle: solution structure of the bacterial toxin rele from thermus2 thermophilus hb8
2d1wmia1
97.4 15
Fold:RelE-like
Superfamily:RelE-like
Family:RelE-like
3c3bpqD_
96.5 11
PDB header:toxin
Chain: D: PDB Molecule:toxin rele3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii
4c3g5oC_
96.2 14
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:uncharacterized protein rv2866;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
5c3kixy_
95.8 18
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: structure of rele nuclease bound to the 70s ribosome (postcleavage2 state; part 3 of 4)
6c3oeiH_
90.4 16
PDB header:toxin, protein binding
Chain: H: PDB Molecule:relk (toxin rv3358);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
7d2a6sa1
88.9 13
Fold:RelE-like
Superfamily:RelE-like
Family:YoeB/Txe-like
8c2otrA_
82.6 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hp0892;
PDBTitle: solution structure of conserved hypothetical protein hp0892 from2 helicobacter pylori
9c5cegB_
81.0 15
PDB header:toxin
Chain: B: PDB Molecule:plasmid stabilization system;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
10c5ja9D_
72.9 22
PDB header:toxin
Chain: D: PDB Molecule:toxin higb-2;
PDBTitle: crystal structure of the higb2 toxin in complex with nb6
11c6feuJ_
67.9 19
PDB header:oxidoreductase
Chain: J: PDB Molecule:peroxiredoxin;
PDBTitle: prxq2, a 1-cys peroxiredoxin of the thermo-acidophilic archaeon2 sulfolobus islandicus
12c3m3iC_
54.0 29
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: hypothetical protein from leishmania major
13d1yuda1
52.3 42
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YML079-like
14d1znpa1
48.8 39
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YML079-like
15c5ovqL_
48.3 21
PDB header:oxidoreductase
Chain: L: PDB Molecule:peroxiredoxin;
PDBTitle: crystal structure of the peroxiredoxin (ahpc2) from the2 hyperthermophilic bacteria aquifex aeolicus vf
16c1psvA_
48.3 39
PDB header:designed peptide
Chain: A: PDB Molecule:pda8d;
PDBTitle: computationally designed peptide with a beta-beta-alpha2 fold selection, nmr, 32 structures
17c3lzzB_
47.6 21
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structures of cupin superfamily bbduf985 from branchiostoma2 belcheri tsingtauense in apo and gdp-bound forms
18c1y96C_
29.8 24
PDB header:rna binding protein
Chain: C: PDB Molecule:gem-associated protein 6;
PDBTitle: crystal structure of the gemin6/gemin7 heterodimer from the2 human smn complex
19d1xcca_
27.5 14
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
20c5f3xB_
27.4 17
PDB header:structural protein/protein binding
Chain: B: PDB Molecule:ankyrin repeat and sam domain-containing protein 4b;
PDBTitle: crystal structure of harmonin npdz1 in complex with anks4b sam-pbm
21d1xe7a_
not modelled 26.2 24
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YML079-like
22d1z8ma1
not modelled 26.1 16
Fold:RelE-like
Superfamily:RelE-like
Family:RelE-like
23d1prxa_
not modelled 22.5 19
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
24c2w1oA_
not modelled 22.3 34
PDB header:translation
Chain: A: PDB Molecule:60s acidic ribosomal protein p2;
PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2
25c2jx3A_
not modelled 22.1 45
PDB header:dna binding protein
Chain: A: PDB Molecule:protein dek;
PDBTitle: nmr solution structure of the n-terminal domain of dek
26c2v2gC_
not modelled 20.7 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:peroxiredoxin 6;
PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form
27d1phza2
not modelled 20.4 17
Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
28c3iz5w_
not modelled 19.8 23
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
29c3izcw_
not modelled 19.3 23
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
30c3e2tA_
not modelled 18.5 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:tryptophan 5-hydroxylase 1;
PDBTitle: the catalytic domain of chicken tryptophan hydroxylase 12 with bound tryptophan
31d1toha_
not modelled 18.3 23
Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
32c5x90B_
not modelled 17.3 29
PDB header:protein transport
Chain: B: PDB Molecule:icmw;
PDBTitle: structure of dotl(656-783)-icms-icmw-lvga derived from legionella2 pneumophila
33c5cw7H_
not modelled 17.0 19
PDB header:toxin
Chain: H: PDB Molecule:plasmid stabilization protein pare;
PDBTitle: crystal structure of the paaa2-pare2 antitoxin-toxin complex
34d1mlwa_
not modelled 16.5 23
Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
35c5jk5A_
not modelled 16.1 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylalanine-4-hydroxylase;
PDBTitle: phenylalanine hydroxylase from dictyostelium - bh2 complex
36d2zcta1
not modelled 15.5 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
37c1fsdA_
not modelled 15.5 35
PDB header:novel sequence
Chain: A: PDB Molecule:full sequence design 1 of beta beta alpha motif;
PDBTitle: full sequence design 1 (fsd-1) of beta beta alpha motif,2 nmr, 41 structures
38c1fsvA_
not modelled 15.5 35
PDB header:beta beta alpha motif
Chain: A: PDB Molecule:full sequence design 1 of beta beta alpha motif;
PDBTitle: full sequence design 1 (fsd-1) of beta beta alpha motif,2 nmr, minimized average structure
39c4v06A_
not modelled 15.4 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:tryptophan 5-hydroxylase 2;
PDBTitle: crystal structure of human tryptophan hydroxylase 2 (tph2), catalytic2 domain
40c2phmA_
not modelled 15.1 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (phenylalanine-4-hydroxylase);
PDBTitle: structure of phenylalanine hydroxylase dephosphorylated
41c5denA_
not modelled 15.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylalanine-4-hydroxylase;
PDBTitle: the first structure of a full-length mammalian phenylalanine2 hydroxylase reveals the architecture of an auto-inhibited tetramer
42d1j8ua_
not modelled 14.9 17
Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
43c3rriB_
not modelled 14.5 15
PDB header:metal binding protein
Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase;
PDBTitle: crystal structure of glyoxalase/bleomycin resistance2 protein/dioxygenase from alicyclobacillus acidocaldarius
44c5abrB_
not modelled 14.1 39
PDB header:electron transport
Chain: B: PDB Molecule:ferredoxin, 2fe-2s;
PDBTitle: structure of fesi protein from azotobacter vinelandii
45c4ii1A_
not modelled 14.0 36
PDB header:transcription
Chain: A: PDB Molecule:zinc finger ccch-type with g patch domain-containing
PDBTitle: crystal structure of the zinc finger of zgpat
46c5hy7D_
not modelled 13.9 19
PDB header:protein binding
Chain: D: PDB Molecule:ysf3;
PDBTitle: sf3b10-sf3b130 from chaetomium thermophilum
47c3kxeB_
not modelled 12.8 21
PDB header:protein binding
Chain: B: PDB Molecule:toxin protein pare-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
48c5vwzB_
not modelled 12.7 75
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak in complex with bim-h3pc
49c5vwzD_
not modelled 12.7 75
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak in complex with bim-h3pc
50d1prtf_
not modelled 12.6 20
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
51d1ttza_
not modelled 12.0 38
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
52c5ifeB_
not modelled 11.7 17
PDB header:splicing
Chain: B: PDB Molecule:splicing factor 3b subunit 5;
PDBTitle: crystal structure of the human sf3b core complex
53c3vejB_
not modelled 11.5 28
PDB header:protein binding
Chain: B: PDB Molecule:ubiquitin-like protein mdy2;
PDBTitle: crystal structure of the get5 carboxyl domain from s. cerevisiae
54d2ctka1
not modelled 10.6 19
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
55c4n6bB_
not modelled 10.4 18
PDB header:transferase
Chain: B: PDB Molecule:serine acetyltransferase apoenzyme;
PDBTitle: soybean serine acetyltransferase complexed with coa
56d1js8a1
not modelled 10.3 27
Fold:Di-copper centre-containing domain
Superfamily:Di-copper centre-containing domain
Family:Hemocyanin middle domain
57c2m46A_
not modelled 10.3 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase, putative;
PDBTitle: solution nmr structure of sacol0876 from staphylococcus aureus col,2 nesg target zr353 and csgid target idp00841
58c5vx3B_
not modelled 10.1 78
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
59d1q1aa_
not modelled 9.8 35
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
60c4q2uH_
not modelled 9.7 8
PDB header:toxin/toxin repressor
Chain: H: PDB Molecule:mrna interferase yafq;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
61c3qz3A_
not modelled 9.6 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferritin;
PDBTitle: the crystal structure of ferritin from vibrio cholerae o1 biovar el2 tor str. n16961
62d1i2ta_
not modelled 9.6 19
Fold:PABP domain-like
Superfamily:PABC (PABP) domain
Family:PABC (PABP) domain
63c2hjhB_
not modelled 9.5 27
PDB header:hydrolase
Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2;
PDBTitle: crystal structure of the sir2 deacetylase
64c3g9dB_
not modelled 9.4 38
PDB header:hydrolase
Chain: B: PDB Molecule:dinitrogenase reductase activacting
PDBTitle: crystal structure glycohydrolase
65c5gapG_
not modelled 9.3 18
PDB header:transcription
Chain: G: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: body region of the u4/u6.u5 tri-snrnp
66c3b50A_
not modelled 9.2 15
PDB header:transport protein
Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap;
PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac.
67c4nb2B_
not modelled 9.0 16
PDB header:transferase
Chain: B: PDB Molecule:metallothiol transferase fosb;
PDBTitle: crystal structure of fosb from staphylococcus aureus at 1.89 angstrom2 resolution - apo structure
68c5vwxB_
not modelled 8.9 86
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-h0-h3glt
69c5vwxD_
not modelled 8.9 86
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-h0-h3glt
70c5vx3H_
not modelled 8.9 86
PDB header:apoptosis
Chain: H: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
71c4behB_
not modelled 8.9 35
PDB header:translation
Chain: B: PDB Molecule:60s acidic ribosomal protein p2;
PDBTitle: solution structure of human ribosomal protein p1.p2 heterodimer
72c3zi1A_
not modelled 8.9 20
PDB header:isomerase
Chain: A: PDB Molecule:glyoxalase domain-containing protein 4;
PDBTitle: crystal structure of human glyoxalase domain-containing protein 42 (glod4)
73c3sbcG_
not modelled 8.9 21
PDB header:oxidoreductase
Chain: G: PDB Molecule:peroxiredoxin tsa1;
PDBTitle: crystal structure of saccharomyces cerevisiae tsa1c47s mutant protein
74c4f52F_
not modelled 8.9 14
PDB header:cell cycle/ligase/signaling protein
Chain: F: PDB Molecule:glomulin;
PDBTitle: structure of a glomulin-rbx1-cul1 complex
75c5vx0D_
not modelled 8.9 86
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak in complex with bim-h3glg
76c5vx3F_
not modelled 8.8 86
PDB header:apoptosis
Chain: F: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
77c5vx3D_
not modelled 8.8 86
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
78c5vx2B_
not modelled 8.8 86
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: mcl-1 in complex with bim-h3pc-rt
79c5vwyB_
not modelled 8.7 86
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-h3pc-rt
80c5vx2D_
not modelled 8.7 86
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: mcl-1 in complex with bim-h3pc-rt
81c5vx0B_
not modelled 8.7 86
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak in complex with bim-h3glg
82c3k1rB_
not modelled 8.6 13
PDB header:structural protein
Chain: B: PDB Molecule:usher syndrome type-1g protein;
PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans
83c2k6rA_
not modelled 8.4 43
PDB header:de novo protein
Chain: A: PDB Molecule:full sequence design 1 synthetic superstable;
PDBTitle: protein folding on a highly rugged landscape: experimental observation2 of glassy dynamics and structural frustration
84c5lqwZ_
not modelled 8.3 17
PDB header:splicing
Chain: Z: PDB Molecule:rds3 complex subunit 10;
PDBTitle: yeast activated spliceosome
85c4ntqB_
not modelled 8.2 19
PDB header:toxin
Chain: B: PDB Molecule:ecl cdii;
PDBTitle: cdia-ct/cdii toxin and immunity complex from enterobacter cloacae
86d1qmva_
not modelled 8.0 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
87c2m60A_
not modelled 8.0 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:enterocin jsb;
PDBTitle: enterocin 7b
88c3v0rA_
not modelled 7.7 29
PDB header:unknown function
Chain: A: PDB Molecule:major allergen alt a 1;
PDBTitle: crystal structure of alternaria alternata allergen alt a 1
89c3l6wB_
not modelled 7.6 29
PDB header:oxygen binding
Chain: B: PDB Molecule:hemocyanin 1;
PDBTitle: structure of the collar functional unit (klh1-h) of keyhole limpet2 hemocyanin
90c1jzpA_
not modelled 7.6 45
PDB header:signaling protein
Chain: A: PDB Molecule:skeletal dihydropydrine receptor;
PDBTitle: modified peptide a (d18-a1) of the rabbit skeletal2 dihydropyridine receptor
91c1du1A_
not modelled 7.6 45
PDB header:signaling protein
Chain: A: PDB Molecule:skeletal dihydropyridine receptor;
PDBTitle: peptide fragment thr671-leu690 of the rabbit skeletal2 dihydropyridine receptor
92c5jtiA_
not modelled 7.3 30
PDB header:signaling protein
Chain: A: PDB Molecule:tankyrase-1;
PDBTitle: crystal structure of the human tankyrase 1 (tnks) sam domain (d1055r),2 crystal form 2
93c2kl4A_
not modelled 7.3 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2032 protein;
PDBTitle: nmr structure of the protein nb7804a
94c2lkqA_
not modelled 7.3 60
PDB header:immune system
Chain: A: PDB Molecule:immunoglobulin lambda-like polypeptide 1;
PDBTitle: nmr structure of the lambda 5 22-45 peptide
95d1jk0a_
not modelled 7.3 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
96c2v27A_
not modelled 7.3 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylalanine hydroxylase;
PDBTitle: structure of the cold active phenylalanine hydroxylase from colwellia2 psychrerythraea 34h
97c2h66G_
not modelled 7.2 17
PDB header:structural genomics/oxidoreductase
Chain: G: PDB Molecule:pv-pf14_0368;
PDBTitle: the crystal structure of plasmodium vivax 2-cys2 peroxiredoxin
98c4nq8B_
not modelled 7.0 20
PDB header:protein transport
Chain: B: PDB Molecule:putative periplasmic substrate-binding transport protein;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 bordetella bronchispeptica (bb3421), target efi-510039, with density3 modeled as pantoate
99c4q51A_
not modelled 7.0 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative molybdenum cofactor biosynthesis2 protein f from burkholderia cenocepacia j2315

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