Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2023A_(RVBD2023A)_2268276_2268734
DateMon Aug 5 13:25:13 BST 2019
Unique Job IDd9fc328d0ac78edd
SequenceVFEFFTQNTS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:20.134 Y:18.420 Z:22.433
Model (left) based on template c5zkeA_
Top template information
PDB header:ligase
Chain: A: PDB Molecule:aminoacyl trna synthetase complex-interacting
PDBTitle: crystal structure of n-terminal domain of plasmodium vivax p43 in2 space group p212121
Confidence and coverage
Confidence: 28.7% Coverage: 14%
22 residues ( 14% of your sequence) have been modelled with 28.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5zkeA_



28.7 45
PDB header:ligase
Chain: A: PDB Molecule:aminoacyl trna synthetase complex-interacting
PDBTitle: crystal structure of n-terminal domain of plasmodium vivax p43 in2 space group p212121
2c5tdyA_



21.4 100
PDB header:motor protein
Chain: A: PDB Molecule:flagellar m-ring protein;
PDBTitle: structure of cofolded flifc:flign complex from thermotoga maritima
3c5o1mA_



19.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubber oxygenase;
PDBTitle: structure of latex clearing protein lcp in the closed state
4c5tdyC_



18.4 60
PDB header:motor protein
Chain: C: PDB Molecule:flagellar m-ring protein;
PDBTitle: structure of cofolded flifc:flign complex from thermotoga maritima
5c2ogsA_



12.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:thermostable carboxylesterase est50;
PDBTitle: crystal structure of the geobacillus stearothermophilus2 carboxylesterase est55 at ph 6.2
6c2cpmA_



11.6 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sperm-associated antigen 7;
PDBTitle: solution structure of the r3h domain of human sperm-2 associated antigen 7
7c4hxhC_



9.4 60
PDB header:rna/rna binding protein/hydrolase
Chain: C: PDB Molecule:histone rna hairpin-binding protein;
PDBTitle: structure of mrna stem-loop, human stem-loop binding protein and2 3'hexo ternary complex
8c2fj0A_



9.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:carboxylic ester hydrolase;
PDBTitle: crystal structure of juvenile hormone esterase from manduca sexta,2 with otfp covalently attached
9c4i3rG_



9.2 38
PDB header:viral protein/immune system
Chain: G: PDB Molecule:outer domain of hiv-1 gp120 (ker2018 od4.2.2);
PDBTitle: crystal structure of the outer domain of hiv-1 gp120 in complex with2 vrc-pg04 space group p3221
10c3dnoC_



9.1 30
PDB header:viral protein
Chain: C: PDB Molecule:hiv-1 envelope glycoprotein gp120;
PDBTitle: molecular structure for the hiv-1 gp120 trimer in the cd4-bound state
11c5yl1A_



9.1 100
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein;
PDBTitle: t=1 subviral particle of penaeus vannamei nodavirus capsid protein2 deletion mutant (delta 1-37 & 251-368)
12c2kjmA_



8.7 60
PDB header:rna binding protein
Chain: A: PDB Molecule:histone rna hairpin-binding protein;
PDBTitle: solution structure of slbp rna binding domain fragment
13d1dzfa1



8.6 60
Fold:Restriction endonuclease-like
Superfamily:Eukaryotic RPB5 N-terminal domain
Family:Eukaryotic RPB5 N-terminal domain
14c4r33A_



8.4 12
PDB header:lyase
Chain: A: PDB Molecule:nosl;
PDBTitle: x-ray structure of the tryptophan lyase nosl with tryptophan and s-2 adenosyl-l-homocysteine bound
15c6ab6A_



8.4 100
PDB header:virus like particle
Chain: A: PDB Molecule:capsid protein;
PDBTitle: cryo-em structure of t=3 penaeus vannamei nodavirus
16c4zelA_



7.6 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:dopamine beta-hydroxylase;
PDBTitle: human dopamine beta-hydroxylase
17c6ab6C_



7.6 100
PDB header:virus like particle
Chain: C: PDB Molecule:capsid protein;
PDBTitle: cryo-em structure of t=3 penaeus vannamei nodavirus
18c3lkxA_



7.4 70
PDB header:chaperone
Chain: A: PDB Molecule:transcription factor btf3;
PDBTitle: human nac dimerization domain
19c3ngbI_



7.4 37
PDB header:viral protein/immune system
Chain: I: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: crystal structure of broadly and potently neutralizing antibody vrc012 in complex with hiv-1 gp120
20d2qqra1



7.2 44
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
21c6h2bC_



not modelled 7.1 71
PDB header:virus like particle
Chain: C: PDB Molecule:capsid protein;
PDBTitle: structure of the macrobrachium rosenbergii nodavirus
22c6gq9A_



not modelled 7.0 50
PDB header:allergen
Chain: A: PDB Molecule:major allergen cor a 1.0401;
PDBTitle: solution structure of the hazel allergen cor a 1.0401
23c5x6cE_



not modelled 6.8 38
PDB header:rna binding protein
Chain: E: PDB Molecule:uncharacterized protein mj1481;
PDBTitle: crystal structure of seprs-sepcyse from methanocaldococcus jannaschii
24c5x6cF_



not modelled 6.8 38
PDB header:rna binding protein
Chain: F: PDB Molecule:uncharacterized protein mj1481;
PDBTitle: crystal structure of seprs-sepcyse from methanocaldococcus jannaschii
25c3rwsA_



not modelled 6.8 42
PDB header:plant protein
Chain: A: PDB Molecule:mtn13 protein;
PDBTitle: crystal structure of medicago truncatula nodulin 13 (mtn13) in complex2 with trans-zeatin
26c4tvpG_



not modelled 6.5 33
PDB header:viral protein/immune system
Chain: G: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: crystal structure of the hiv-1 bg505 sosip.664 env trimer ectodomain,2 comprising atomic-level definition of pre-fusion gp120 and gp41, in3 complex with human antibodies pgt122 and 35o22
27c2yukA_



not modelled 6.4 42
PDB header:transferase
Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia
PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog
28d1ukca_



not modelled 6.4 10
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
29c3j5mI_



not modelled 6.2 33
PDB header:viral protein/immune system
Chain: I: PDB Molecule:bg505 sosip gp120;
PDBTitle: cryo-em structure of the bg505 sosip.664 hiv-1 env trimer with 3 pgv042 fabs
30c2ww9B_



not modelled 6.1 35
PDB header:ribosome
Chain: B: PDB Molecule:protein transport protein sss1;
PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the yeast2 80s ribosome
31d2bk0a1



not modelled 6.1 25
Fold:TBP-like
Superfamily:Bet v1-like
Family:Pathogenesis-related protein 10 (PR10)-like
32c6h3vA_



not modelled 6.0 23
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: bunyamwera virus glycoprotein gc head domain
33d1txca1



not modelled 5.7 25
Fold:TBP-like
Superfamily:Bet v1-like
Family:Pathogenesis-related protein 10 (PR10)-like
34c5csjC_



not modelled 5.7 53
PDB header:transferase
Chain: C: PDB Molecule:ribosomal protein s6 kinase alpha-1;
PDBTitle: s100b-rsk1 crystal structure b
35d1qmra_



not modelled 5.6 33
Fold:TBP-like
Superfamily:Bet v1-like
Family:Pathogenesis-related protein 10 (PR10)-like
36d1fm4a_



not modelled 5.5 25
Fold:TBP-like
Superfamily:Bet v1-like
Family:Pathogenesis-related protein 10 (PR10)-like
37d2gy9p1



not modelled 5.4 15
Fold:Ribosomal protein S16
Superfamily:Ribosomal protein S16
Family:Ribosomal protein S16
38c5j12A_



not modelled 5.4 38
PDB header:signaling protein
Chain: A: PDB Molecule:thymic stromal lymphopoietin;
PDBTitle: structure of human tslp:tslpr in complex with mouse il-7ralpha
39c1bcrA_



not modelled 5.3 50
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:serine carboxypeptidase ii;
PDBTitle: complex of the wheat serine carboxypeptidase, cpdw-ii, with the2 microbial peptide aldehyde inhibitor, antipain, and arginine at room3 temperature
40d1e09a_



not modelled 5.3 50
Fold:TBP-like
Superfamily:Bet v1-like
Family:Pathogenesis-related protein 10 (PR10)-like
41c3ie5A_



not modelled 5.3 25
PDB header:plant protein, biosynthetic protein
Chain: A: PDB Molecule:phenolic oxidative coupling protein hyp-1;
PDBTitle: crystal structure of hyp-1 protein from hypericum perforatum (st2 john's wort) involved in hypericin biosynthesis
42d1eo0a_



not modelled 5.2 14
Fold:N-cbl like
Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
43d2b7oa1



not modelled 5.2 34
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class-II DAHP synthetase

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