Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2023c_(-)_2267757_2268116
DateMon Aug 5 13:25:13 BST 2019
Unique Job IDc734c57186ada645
SequenceVAARHARAGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:17.965 Y:16.434 Z:15.338
Model (left) based on template c5e9fD_
Top template information
PDB header:lyase
Chain: D: PDB Molecule:isocitrate lyase;
PDBTitle: structural insights of isocitrate lyases from magnaporthe oryzae
Confidence and coverage
Confidence: 18.1% Coverage: 13%
16 residues ( 13% of your sequence) have been modelled with 18.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5e9fD_



18.1 44
PDB header:lyase
Chain: D: PDB Molecule:isocitrate lyase;
PDBTitle: structural insights of isocitrate lyases from magnaporthe oryzae
2c2r7mA_



14.9 50
PDB header:ligase
Chain: A: PDB Molecule:5-formaminoimidazole-4-carboxamide-1-(beta)-d-ribofuranosyl
PDBTitle: crystal structure of faicar synthetase (purp) from m. jannaschii2 complexed with amp
3c5d5oE_



13.4 67
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein mj0489;
PDBTitle: hcgc from methanocaldococcus jannaschii
4d1dqua_



13.0 44
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
5d3bnea2



12.2 21
Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Family:Lipoxigenase N-terminal domain
6d1f61a_



11.9 44
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
7d1igwa_



11.6 31
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
8c3j81j_



11.5 24
PDB header:ribosome
Chain: J: PDB Molecule:us4;
PDBTitle: cryoem structure of a partial yeast 48s preinitiation complex
9c5o4jC_



10.5 67
PDB header:transferase
Chain: C: PDB Molecule:hcgc;
PDBTitle: hcgc from methanococcus maripaludis cocrystallized with sah and2 pyridinol
10d2j01d1



9.3 47
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
11d2qamc1



8.8 33
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
12c2gyaA_



7.9 38
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structure of the 50s subunit of a pre-translocational e. coli ribosome2 obtained by fitting atomic models for rna and protein components into3 cryo-em map emd-1056
13d2zjra1



7.8 50
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
14c1q46A_



7.2 23
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit;
PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia
15c3e5bB_



6.8 25
PDB header:lyase
Chain: B: PDB Molecule:isocitrate lyase;
PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella melitensis
16c3i4eA_



6.4 31
PDB header:lyase
Chain: A: PDB Molecule:isocitrate lyase;
PDBTitle: crystal structure of isocitrate lyase from burkholderia2 pseudomallei
17d1inza_



6.3 33
Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:ENTH domain
18c3d5bD_



6.3 47
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400.
19c2z4lC_



5.9 38
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l2;
PDBTitle: crystal structure of the bacterial ribosome from escherichia coli in2 complex with paromomycin and ribosome recycling factor (rrf). this3 file contains the 50s subunit of the first 70s ribosome, with4 paromomycin and rrf bound. the entire crystal structure contains two5 70s ribosomes and is described in remark 400.
20c4owfG_



5.8 83
PDB header:transcription/protein binding
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase rnf31;
PDBTitle: crystal structure of the nemo cozi in complex with hoip nzf1 domain
21d6paxa1



not modelled 5.5 45
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite