Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2033c_(-)_2280248_2281090
DateMon Aug 5 13:25:14 BST 2019
Unique Job IDd0070485defb6b6b
SequenceVLDRYGTDVL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.040 Y:26.124 Z:22.971
Model (left) based on template c4r36A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:putative acyl-[acyl-carrier-protein]--udp-n-
PDBTitle: crystal structure analysis of lpxa, a udp-n-acetylglucosamine2 acyltransferase from bacteroides fragilis 9343
Confidence and coverage
Confidence: 28.2% Coverage: 16%
46 residues ( 16% of your sequence) have been modelled with 28.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4r36A_



28.2 22
PDB header:transferase
Chain: A: PDB Molecule:putative acyl-[acyl-carrier-protein]--udp-n-
PDBTitle: crystal structure analysis of lpxa, a udp-n-acetylglucosamine2 acyltransferase from bacteroides fragilis 9343
2c4wxlB_



24.4 27
PDB header:hydrolase
Chain: B: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of a peptide deformylase from haemophilus influenzae2 complex with actinonin
3d2defa_



24.0 22
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
4c5xxeD_



23.4 32
PDB header:dna binding protein
Chain: D: PDB Molecule:protection of telomeres protein tpz1;
PDBTitle: crystal structure of poz1 and tpz1
5d2jf2a1



23.0 17
Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:UDP N-acetylglucosamine acyltransferase
6c5xxeC_



22.8 32
PDB header:dna binding protein
Chain: C: PDB Molecule:protection of telomeres protein tpz1;
PDBTitle: crystal structure of poz1 and tpz1
7c4cg4D_



21.1 22
PDB header:actin-binding protein
Chain: D: PDB Molecule:pyrin;
PDBTitle: crystal structure of the chs-b30.2 domains of trim20
8c3mmlD_



17.6 32
PDB header:hydrolase
Chain: D: PDB Molecule:allophanate hydrolase subunit 1;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
9c6e1jB_



16.2 20
PDB header:plant protein
Chain: B: PDB Molecule:2-isopropylmalate synthase, a genome specific 1;
PDBTitle: crystal structure of methylthioalkylmalate synthase (bjumam1.1) from2 brassica juncea
10c3qu1B_



14.0 27
PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:peptide deformylase 2;
PDBTitle: peptide deformylase from vibrio cholerae
11d1xeoa1



14.0 22
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
12c5j46A_



14.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of a peptide deformylase from burkholderia2 multivorans
13c2kdcC_



13.7 19
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: nmr solution structure of e. coli diacylglycerol kinase2 (dagk) in dpc micelles
14c2epgB_



12.4 48
PDB header:ligase
Chain: B: PDB Molecule:hypothetical protein ttha1785;
PDBTitle: crystal structure of ttha1785
15c5ip0C_



11.8 13
PDB header:structural protein
Chain: C: PDB Molecule:pha granule-associated protein;
PDBTitle: pha binding protein phap (phasin)
16c6flnE_



11.4 22
PDB header:protein binding
Chain: E: PDB Molecule:e3 ubiquitin/isg15 ligase trim25;
PDBTitle: crystal structure of the human trim25 coiled-coil and pryspry domains
17c5vwxB_



11.1 60
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-h0-h3glt
18c5vwxD_



11.1 60
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-h0-h3glt
19d1e3oc2



11.1 29
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:POU-specific domain
20c2e6iA_



11.0 38
PDB header:transferase
Chain: A: PDB Molecule:tyrosine-protein kinase itk/tsk;
PDBTitle: solution structure of the btk motif of tyrosine-protein2 kinase itk from human
21c2w3tA_



not modelled 10.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: chloro complex of the ni-form of e.coli deformylase
22d1wz3a1



not modelled 10.7 27
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:APG12-like
23c3w1sC_



not modelled 10.4 31
PDB header:ligase
Chain: C: PDB Molecule:ubiquitin-like protein atg12;
PDBTitle: crystal structure of saccharomyces cerevisiae atg12-atg5 conjugate2 bound to the n-terminal domain of atg16
24c5vx3F_



not modelled 10.3 64
PDB header:apoptosis
Chain: F: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
25c5vx3D_



not modelled 10.3 64
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
26c5vx3H_



not modelled 10.2 64
PDB header:apoptosis
Chain: H: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
27d1uhua_



not modelled 10.1 44
Fold:Retroviral matrix proteins
Superfamily:Retroviral matrix proteins
Family:MMLV matrix protein-like
28d1au7a2



not modelled 10.0 21
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:POU-specific domain
29c5vx0B_



not modelled 9.7 64
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak in complex with bim-h3glg
30c5vwyB_



not modelled 9.7 64
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-h3pc-rt
31c5vx2D_



not modelled 9.7 64
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: mcl-1 in complex with bim-h3pc-rt
32c5vx2B_



not modelled 9.6 64
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: mcl-1 in complex with bim-h3pc-rt
33c5vx0D_



not modelled 9.6 64
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak in complex with bim-h3glg
34c5vx3B_



not modelled 9.5 64
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
35c3chtA_



not modelled 9.5 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase;
PDBTitle: crystal structure of di-iron aurf with partially bound ligand
36c1ws1A_



not modelled 8.7 27
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase 1;
PDBTitle: structure analysis of peptide deformylase from bacillus2 cereus
37c2phcB_



not modelled 8.4 30
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
38d1uc2a_



not modelled 8.3 45
Fold:Hypothetical protein PH1602
Superfamily:Hypothetical protein PH1602
Family:Hypothetical protein PH1602
39c3uwaA_



not modelled 8.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:riia-riib membrane-associated protein;
PDBTitle: crystal structure of a probable peptide deformylase from synechococcus2 phage s-ssm7
40c2yy8B_



not modelled 8.1 39
PDB header:transferase
Chain: B: PDB Molecule:upf0106 protein ph0461;
PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine
41c3ib7A_



not modelled 8.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:icc protein;
PDBTitle: crystal structure of full length rv0805
42d2fcja1



not modelled 7.9 60
Fold:Toprim domain
Superfamily:Toprim domain
Family:Toprim domain
43c2k1hA_



not modelled 7.6 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ser13;
PDBTitle: solution nmr structure of ser13 from staphylococcus epidermidis.2 northeast structural genomics consortium target ser13
44d3proc2



not modelled 7.4 31
Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
45c3rxyA_



not modelled 7.4 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:nif3 protein;
PDBTitle: crystal structure of nif3 superfamily protein from sphaerobacter2 thermophilus
46d1rl4a_



not modelled 7.1 27
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
47d1ksqa_



not modelled 7.0 36
Fold:TB module/8-cys domain
Superfamily:TB module/8-cys domain
Family:TB module/8-cys domain
48c6cazA_



not modelled 7.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of a peptide deformylase from legionella pneumophila
49c2ynmD_



not modelled 7.0 23
PDB header:oxidoreductase
Chain: D: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the adpxalf3-stabilized transition state of the2 nitrogenase-like dark-operative protochlorophyllide oxidoreductase3 complex from prochlorococcus marinus with its substrate4 protochlorophyllide a
50c5jxxC_



not modelled 6.8 17
PDB header:transferase
Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: crystal structure of udp-n-acetylglucosamine o-acyltransferase (lpxa)2 from moraxella catarrhalis rh4.
51c5lz3B_



not modelled 6.7 47
PDB header:antiviral protein
Chain: B: PDB Molecule:3a;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of aichivirus a
52c2m89A_



not modelled 6.6 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:aha1 domain protein;
PDBTitle: solution structure of the aha1 dimer from colwellia psychrerythraea
53c3ocaB_



not modelled 6.6 27
PDB header:hydrolase
Chain: B: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of peptide deformylase from ehrlichia chaffeensis
54d1mn8a_



not modelled 6.5 44
Fold:Retroviral matrix proteins
Superfamily:Retroviral matrix proteins
Family:MMLV matrix protein-like
55c3j9vC_



not modelled 6.5 28
PDB header:hydrolase
Chain: C: PDB Molecule:v-type proton atpase catalytic subunit a;
PDBTitle: yeast v-atpase state 3
56d2phcb1



not modelled 6.1 29
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
57d1whwa_



not modelled 6.1 10
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
58c2r5iL_



not modelled 6.0 47
PDB header:viral protein
Chain: L: PDB Molecule:l1 protein;
PDBTitle: pentamer structure of major capsid protein l1 of human papilloma virus2 type 18
59d2f09a1



not modelled 5.9 15
Fold:Streptavidin-like
Superfamily:YdhA-like
Family:YdhA-like
60c2lghA_



not modelled 5.9 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the ahsa1-like protein aha_2358 from2 aeromonas hydrophila refined with nh rdcs, northeast structural3 genomics consortium target ahr99.
61c3cp8C_



not modelled 5.8 50
PDB header:oxidoreductase
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: crystal structure of gida from chlorobium tepidum
62d1avaa2



not modelled 5.8 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
63c3cpmA_



not modelled 5.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase, chloroplast;
PDBTitle: plant peptide deformylase pdf1b crystal structure
64c3oepA_



not modelled 5.8 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha0988;
PDBTitle: crystal structure of ttha0988 in space group p43212
65c3e3uA_



not modelled 5.7 29
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of mycobacterium tuberculosis peptide2 deformylase in complex with inhibitor
66d1dzla_



not modelled 5.6 60
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group I dsDNA viruses
Family:Papovaviridae-like VP
67c1dzlA_



not modelled 5.6 60
PDB header:virus
Chain: A: PDB Molecule:late major capsid protein l1;
PDBTitle: l1 protein of human papillomavirus 16
68d1h3na1



not modelled 5.6 26
Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
69c4mjgB_



not modelled 5.6 33
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf4853 family protein (actodo_00621) from2 actinomyces odontolyticus atcc 17982 at 2.65 a resolution
70c2ew7A_



not modelled 5.5 20
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of helicobacter pylori peptide deformylase
71c4e06I_



not modelled 5.4 83
PDB header:hydrolase/hydrolase inhibitor
Chain: I: PDB Molecule:salivary anti-thrombin peptide anophelin;
PDBTitle: anophelin from the malaria vector inhibits thrombin through a novel2 reverse-binding mechanism
72d1ix1a_



not modelled 5.3 18
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
73c3j6rC_



not modelled 5.3 60
PDB header:virus
Chain: C: PDB Molecule:major capsid protein l1;
PDBTitle: electron cryo-microscopy of human papillomavirus type 16 capsid
74c5ii6A_



not modelled 5.2 20
PDB header:cell adhesion
Chain: A: PDB Molecule:zona pellucida sperm-binding protein 2;
PDBTitle: crystal structure of the zp-n1 domain of mouse sperm receptor zp2 at2 0.95 a resolution
75c5tgtA_



not modelled 5.2 25
PDB header:ligase
Chain: A: PDB Molecule:glutamate--trna ligase;
PDBTitle: crystal structure of glytamyl-trna synthetase glurs from pseudomonas2 aeruginosa
76c3g5rA_



not modelled 5.2 43
PDB header:transferase
Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)-
PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate
77c4e8wA_



not modelled 5.2 32
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:d-beta-d-heptose 7-phosphate kinase;
PDBTitle: crystal structure of burkholderia cenocepacia hlda in complex with an2 atp-competitive inhibitor
78c3n0rA_



not modelled 5.1 21
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr stress response regulator at 1.25 angstrom2 resolution
79c3ziuA_



not modelled 5.1 8
PDB header:ligase
Chain: A: PDB Molecule:leucyl-trna synthetase;
PDBTitle: crystal structure of mycoplasma mobile leucyl-trna2 synthetase with leu-ams in the active site

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