Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2039c_(-)_2284807_2285649
DateMon Aug 5 13:25:15 BST 2019
Unique Job ID1c1a48e6e3e0fa90
SequenceVGWADRIVHR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.644 Y:75.205 Z:74.368
Model (left) based on template d2r6gg1
Top template information
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
Confidence and coverage
Confidence:100.0% Coverage: 97%
271 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2r6gg1



100.0 27
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
2c4tqvJ_



100.0 25
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
3c3fh6F_



100.0 19
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
4c4tqvI_



100.0 17
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
5c2r6gF_



100.0 22
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
6d2onkc1



100.0 16
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
7c2onkC_



100.0 16
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
8c3d31D_



100.0 15
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
9d3d31c1



100.0 15
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
10d2r6gf2



100.0 22
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
11c4ymuC_



100.0 9
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
12d3dhwa1



99.8 13
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13d2r6gf1



84.0 19
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
14c5kbuA_



57.5 9
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
15c2hx6A_



28.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease;
PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb
16c3hd7A_



19.5 22
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
17c2m8gX_



18.3 17
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
18c4l5eA_



18.0 13
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
19d1umqa_



15.3 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
20c1umqA_



15.3 6
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
21c2kogA_



not modelled 13.6 23
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
22c3ipdB_



not modelled 12.4 6
PDB header:exocytosis
Chain: B: PDB Molecule:syntaxin-1a;
PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21
23c3e7lD_



not modelled 12.0 23
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
24d1ntca_



not modelled 11.6 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
25c6gcs6_



not modelled 10.1 10
PDB header:oxidoreductase
Chain: 6: PDB Molecule:nd6 subunit (nu6m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
26d1etob_



not modelled 9.8 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
27c1g2hA_



not modelled 8.9 20
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
28d1g2ha_



not modelled 8.9 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
29d1fipa_



not modelled 8.3 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
30d1etxa_



not modelled 7.8 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
31c1ojlD_



not modelled 6.1 13
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
32d1cf7a_



not modelled 5.7 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Cell cycle transcription factor e2f-dp
33c5m7nA_



not modelled 5.5 6
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
34d2diia1



not modelled 5.4 28
Fold:BSD domain-like
Superfamily:BSD domain-like
Family:BSD domain
35d1brwa3



not modelled 5.3 24
Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
36c2jwaA_



not modelled 5.2 18
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
37c2ks1A_



not modelled 5.2 18
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
38d2tpta3



not modelled 5.1 24
Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
39c2diiA_



not modelled 5.0 28
PDB header:transcription
Chain: A: PDB Molecule:tfiih basal transcription factor complex p62
PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below