Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2053c_(fxsA)_2312530_2313057
DateMon Aug 5 13:25:16 BST 2019
Unique Job ID735c6490002c0ec5
SequenceVSRLLLSYAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.722 Y:22.054 Z:30.534
Model (left) based on template c3tadB_
Top template information
PDB header:protein binding
Chain: B: PDB Molecule:liprin-alpha-2;
PDBTitle: crystal structure of the liprin-alpha/liprin-beta complex
Confidence and coverage
Confidence: 59.6% Coverage: 22%
38 residues ( 22% of your sequence) have been modelled with 59.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3tadB_



59.6 24
PDB header:protein binding
Chain: B: PDB Molecule:liprin-alpha-2;
PDBTitle: crystal structure of the liprin-alpha/liprin-beta complex
2d2e74f1



34.4 22
Fold:Single transmembrane helix
Superfamily:PetM subunit of the cytochrome b6f complex
Family:PetM subunit of the cytochrome b6f complex
3c2zt9F_



31.6 22
PDB header:photosynthesis
Chain: F: PDB Molecule:cytochrome b6-f complex subunit 7;
PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
4c4h44F_



31.6 22
PDB header:photosynthesis
Chain: F: PDB Molecule:cytochrome b6-f complex subunit 7;
PDBTitle: 2.70 a cytochrome b6f complex structure from nostoc pcc 7120
5c4ogqF_



31.6 22
PDB header:electron transport
Chain: F: PDB Molecule:cytochrome b6-f complex subunit 7;
PDBTitle: internal lipid architecture of the hetero-oligomeric cytochrome b6f2 complex
6c2cpbA_



29.2 24
PDB header:viral protein
Chain: A: PDB Molecule:m13 major coat protein;
PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures
7c3jcue_



17.9 25
PDB header:membrane protein
Chain: E: PDB Molecule:cytochrome b559 subunit alpha;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
8c3kziE_



16.8 25
PDB header:electron transport
Chain: E: PDB Molecule:cytochrome b559 subunit alpha;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
9d2axte1



15.9 25
Fold:Single transmembrane helix
Superfamily:Cytochrome b559 subunits
Family:Cytochrome b559 subunits
10c5wlbC_



12.6 40
PDB header:protein binding
Chain: C: PDB Molecule:225-15 b;
PDBTitle: kras g12v, bound to gppnhp and miniprotein 225-15a/b
11c6fkib_



10.1 15
PDB header:membrane protein
Chain: B: PDB Molecule:atp synthase subunit beta, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
12c5xv8A_



9.4 14
PDB header:nuclear protein
Chain: A: PDB Molecule:uv-stimulated scaffold protein a;
PDBTitle: solution structure of the complex between uvssa acidic region and2 tfiih p62 ph domain
13c5ktfA_



9.3 38
PDB header:signaling protein
Chain: A: PDB Molecule:scavenger receptor class b member 1;
PDBTitle: structure of the c-terminal transmembrane domain of scavenger receptor2 bi (sr-bi)
14c6gcsg_



9.3 24
PDB header:oxidoreductase
Chain: G: PDB Molecule:30-kda protein (nugm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
15c4v1gA_



8.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:f0f1 atp synthase subunit c;
PDBTitle: crystal structure of a mycobacterial atp synthase rotor ring
16c5ounA_



6.9 24
PDB header:hydrolase
Chain: A: PDB Molecule:ruvb-like protein 2;
PDBTitle: nmr solution structure of the external dii domain of rvb2 from2 saccharomyces cerevisiae
17d2i5nh2



6.8 17
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction centre subunit H, transmembrane region
Family:Photosystem II reaction centre subunit H, transmembrane region
18c4k7eA_



6.7 42
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: crystal structure of junin virus nucleoprotein
19c2mpnB_



5.9 20
PDB header:membrane protein
Chain: B: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
20c2mpnA_



5.9 20
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
21c4o6hA_



not modelled 5.5 45
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: 2.8a crystal structure of lymphocytic choriomeningitis virus2 nucleoprotein c-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below