Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2056c_(rpsN)_2314362_2314667
DateMon Aug 5 13:25:16 BST 2019
Unique Job ID7a9b49165a679ca7
SequenceVAKKSKIVKN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.467 Y:47.382 Z:58.475
Model (left) based on template c6dzkN_
Top template information
PDB header:ribosome
Chain: N: PDB Molecule:30s ribosomal protein s14;
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 30s ribosomal2 subunit with mpy
Confidence and coverage
Confidence:100.0% Coverage: 99%
100 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6dzkN_



100.0 72
PDB header:ribosome
Chain: N: PDB Molecule:30s ribosomal protein s14;
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 30s ribosomal2 subunit with mpy
2c3j6vN_



100.0 32
PDB header:ribosome
Chain: N: PDB Molecule:28s ribosomal protein s14, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
3c3bbnN_



100.0 34
PDB header:ribosome
Chain: N: PDB Molecule:ribosomal protein s14;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
4d2qaln1



100.0 48
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Ribosomal protein S14
5c2gy9N_



99.9 56
PDB header:ribosome
Chain: N: PDB Molecule:30s ribosomal subunit protein s14;
PDBTitle: structure of the 30s subunit of a pre-translocational e. coli ribosome2 obtained by fitting atomic models for rna and protein components into3 cryo-em map emd-1056
6d2uubn1



99.9 48
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Ribosomal protein S14
7c3j20P_



94.1 25
PDB header:ribosome
Chain: P: PDB Molecule:30s ribosomal protein s14p type z;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
8c3jyvN_



93.8 21
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s29(a);
PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution
9c3zey8_



93.8 21
PDB header:ribosome
Chain: 8: PDB Molecule:ribosomal protein s29, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
10c2xznN_



93.7 21
PDB header:ribosome
Chain: N: PDB Molecule:rps29e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
11c5xxud_



93.4 21
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein us3;
PDBTitle: small subunit of toxoplasma gondii ribosome
12c6az1S_



93.1 21
PDB header:ribosome/antibiotic
Chain: S: PDB Molecule:ribosomal protein s14;
PDBTitle: cryo-em structure of the small subunit of leishmania ribosome bound to2 paromomycin
13c5xyid_



92.9 28
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein s3, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
14c2zkqn_



91.6 26
PDB header:ribosomal protein/rna
Chain: N: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
15c1s1hN_



83.0 27
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s29-b;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
16c3uz0A_



47.7 15
PDB header:transport protein
Chain: A: PDB Molecule:stage iii sporulation protein ah;
PDBTitle: crystal structure of spoiiiah and spoiiq complex
17c3tufA_



40.4 15
PDB header:signaling protein
Chain: A: PDB Molecule:stage iii sporulation protein ah;
PDBTitle: structure of the spoiiq-spoiiiah pore forming complex.
18c6amaO_



36.7 23
PDB header:dna binding protein/dna
Chain: O: PDB Molecule:putative dna-binding protein;
PDBTitle: structure of s. coelicolor/s. venezuelae bldc-smea-ssfa complex to2 3.09 angstrom
19c4j2nB_



35.7 36
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
20c4j2nA_



29.7 36
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
21d2bmfa1



not modelled 23.4 35
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
22c2zhhA_



not modelled 22.5 12
PDB header:transcription
Chain: A: PDB Molecule:redox-sensitive transcriptional activator soxr;
PDBTitle: crystal structure of soxr
23c4lhfA_



not modelled 20.5 35
PDB header:viral protein
Chain: A: PDB Molecule:regulatory protein cox;
PDBTitle: crystal structure of a dna binding protein from phage p2
24d1r8da_



not modelled 16.4 12
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
25c3gpvA_



not modelled 15.0 15
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of a transcriptional regulator, merr2 family from bacillus thuringiensis
26c1yuzB_



not modelled 13.4 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
27d2ieaa3



not modelled 12.9 14
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Transketolase C-terminal domain-like
28c1y6uA_



not modelled 11.6 25
PDB header:dna binding protein
Chain: A: PDB Molecule:excisionase from transposon tn916;
PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases
29c3zeyU_



not modelled 11.1 22
PDB header:ribosome
Chain: U: PDB Molecule:40s ribosomal protein s25, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
30c3izbV_



not modelled 10.6 30
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein rps25 (s25e);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
31c5ntbB_



not modelled 10.5 28
PDB header:protease inhibitor
Chain: B: PDB Molecule:papain inhibitor;
PDBTitle: streptomyces papain inhibitor (spi)
32d2cp5a1



not modelled 9.9 25
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
33c6fmlI_



not modelled 9.7 13
PDB header:dna binding protein
Chain: I: PDB Molecule:ies6;
PDBTitle: cryoem structure ino80core nucleosome complex
34c2xzm8_



not modelled 9.5 26
PDB header:ribosome
Chain: 8: PDB Molecule:rps25e,;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
35c4ivvA_



not modelled 9.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: catalytic amidase domain of the major autolysin lyta from2 streptococcus pneumaniae
36d1nj1a2



not modelled 8.8 11
Fold:IF3-like
Superfamily:C-terminal domain of ProRS
Family:C-terminal domain of ProRS
37c3j3aZ_



not modelled 8.7 26
PDB header:ribosome
Chain: Z: PDB Molecule:40s ribosomal protein s25;
PDBTitle: structure of the human 40s ribosomal proteins
38c3iz6V_



not modelled 8.7 26
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein s25 (s25e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
39c1qw1A_



not modelled 8.6 21
PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: solution structure of the c-terminal domain of dtxr2 residues 110-226
40d1n10a2



not modelled 8.2 17
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:Pollen allergen PHL P 1 N-terminal domain
41c1z4hA_



not modelled 8.1 18
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
42c4r4eA_



not modelled 8.0 19
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:hth-type transcriptional regulator glnr;
PDBTitle: structure of glnr-dna complex
43c4qoyC_



not modelled 7.9 24
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase e1 component;
PDBTitle: novel binding motif and new flexibility revealed by structural2 analysis of a pyruvate dehydrogenase-dihydrolipoyl acetyltransferase3 sub-complex from the escherichia coli pyruvate dehydrogenase multi-4 enzyme complex
44c3bboY_



not modelled 7.6 13
PDB header:ribosome
Chain: Y: PDB Molecule:ribosomal protein l28;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
45c6dzpy_



not modelled 7.2 25
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 50s ribosomal2 subunit
46c3hh0C_



not modelled 7.0 8
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of a transcriptional regulator, merr family from2 bacillus cereus
47d1kcfa1



not modelled 6.6 21
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
48d2qamz1



not modelled 6.6 13
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
49c2fugC_



not modelled 6.6 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
50d1e0ea_



not modelled 6.4 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
51d1whha_



not modelled 6.3 20
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
52c5xxuZ_



not modelled 6.3 33
PDB header:ribosome
Chain: Z: PDB Molecule:ribosomal protein es25;
PDBTitle: small subunit of toxoplasma gondii ribosome
53d1wg2a_



not modelled 6.2 27
Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
54c4uj3B_



not modelled 5.9 14
PDB header:transport protein
Chain: B: PDB Molecule:rab-3a-interacting protein;
PDBTitle: crystal structure of human rab11-rabin8-fip3
55c4jcwB_



not modelled 5.9 21
PDB header:sugar binding protein
Chain: B: PDB Molecule:cellulose binding protein;
PDBTitle: crystal structure of clavibacter michiganensis expansin in complex2 with cellopentaose
56d1s7za_



not modelled 5.8 17
Fold:Another 3-helical bundle
Superfamily:B-form DNA mimic Ocr
Family:B-form DNA mimic Ocr
57c6ddgJ_



not modelled 5.7 25
PDB header:ribosome/antibiotic
Chain: J: PDB Molecule:50s ribosomal protein l28;
PDBTitle: structure of the 50s ribosomal subunit from methicillin resistant2 staphylococcus aureus in complex with the oxazolidinone antibiotic3 lzd-6
58c2hr5B_



not modelled 5.6 21
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
59c2k0aA_



not modelled 5.5 14
PDB header:metal binding protein
Chain: A: PDB Molecule:pre-mrna-splicing factor rds3;
PDBTitle: 1h, 15n and 13c chemical shift assignments for rds3 protein
60c5h1nB_



not modelled 5.4 19
PDB header:unknown function
Chain: B: PDB Molecule:upf0253 protein yaep;
PDBTitle: crystal structure of sf173 from shigella flexneri
61d1whka_



not modelled 5.3 7
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
62d1whja_



not modelled 5.3 40
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
63d2coza1



not modelled 5.3 30
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
64c3qaoA_



not modelled 5.3 17
PDB header:transcription regulator
Chain: A: PDB Molecule:merr-like transcriptional regulator;
PDBTitle: the crystal structure of the n-terminal domain of a merr-like2 transcriptional regulator from listeria monocytogenes egd-e
65d1k6ya1



not modelled 5.1 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
66d2coya1



not modelled 5.1 28
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
67c3zf7n_



not modelled 5.1 23
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l13;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome

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