Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2058c_(rpmB)_2314833_2315069
DateMon Aug 5 13:25:17 BST 2019
Unique Job IDd16b655a91c91ebb
SequenceLSAHCQVTGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.794 Y:26.611 Z:53.052
Model (left) based on template c6dzpy_
Top template information
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 50s ribosomal2 subunit
Confidence and coverage
Confidence:100.0% Coverage: 97%
76 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6dzpy_



100.0 83
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 50s ribosomal2 subunit
2d2qamz1



100.0 45
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
3c1vw4S_



100.0 24
PDB header:ribosome
Chain: S: PDB Molecule:54s ribosomal protein l24, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
4c3bboY_



100.0 33
PDB header:ribosome
Chain: Y: PDB Molecule:ribosomal protein l28;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
5d2jz6a1



99.9 37
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
6c4v191_



99.9 20
PDB header:ribosome
Chain: 1: PDB Molecule:mitoribosomal protein bl28m, mrpl28;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
7c5o60Y_



99.9 44
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l28;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
8c6ddgJ_



99.9 33
PDB header:ribosome/antibiotic
Chain: J: PDB Molecule:50s ribosomal protein l28;
PDBTitle: structure of the 50s ribosomal subunit from methicillin resistant2 staphylococcus aureus in complex with the oxazolidinone antibiotic3 lzd-6
9c2jl81_



99.8 26
PDB header:ribosome
Chain: 1: PDB Molecule:50s ribosomal protein l28;
PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome (part 4 of 4).3 this file contains the 50s subunit.
10c4wfaU_



99.4 30
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l28;
PDBTitle: the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with linezolid
11d2zjru1



99.2 10
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
12c4ce41_



98.4 27
PDB header:ribosome
Chain: 1: PDB Molecule:mrpl28;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
13d2j0111



97.6 27
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
14d2cu8a1



38.3 21
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
15c2k5cA_



20.1 22
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein pf0385;
PDBTitle: nmr structure for pf0385
16c2uz0B_



16.6 19
PDB header:hydrolase
Chain: B: PDB Molecule:tributyrin esterase;
PDBTitle: the crystal crystal structure of the esta protein, a2 virulence factor esta protein from streptococcus pneumonia
17c4n0oC_



15.6 43
PDB header:hydrolase/dna
Chain: C: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: complex structure of arterivirus nonstructural protein 10 (helicase)2 with dna
18c2elrA_



10.3 43
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 15th c2h2 zinc finger of human2 zinc finger protein 406
19d2yt9a2



10.1 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
20c1dvpA_



9.4 18
PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
21c4zxsC_



not modelled 8.8 21
PDB header:viral protein
Chain: C: PDB Molecule:virion egress protein ul34;
PDBTitle: hsv-1 nuclear egress complex
22c2fs1A_



not modelled 8.2 21
PDB header:protein binding
Chain: A: PDB Molecule:psd-1;
PDBTitle: solution structure of psd-1
23c2oz5A_



not modelled 8.0 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phosphotyrosine protein phosphatase ptpb;
PDBTitle: crystal structure of mycobacterium tuberculosis protein tyrosine2 phosphatase ptpb in complex with the specific inhibitor omts
24d1acoa1



not modelled 7.7 8
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
25c3zyqA_



not modelled 7.4 15
PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.48 a3 resolution
26d2dmda2



not modelled 7.2 43
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
27d1ywfa1



not modelled 7.0 12
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Mycobacterial PtpB-like
28d1cz5a2



not modelled 6.7 50
Fold:Cdc48 domain 2-like
Superfamily:Cdc48 domain 2-like
Family:Cdc48 domain 2-like
29c5zwnY_



not modelled 6.5 43
PDB header:splicing
Chain: Y: PDB Molecule:protein luc7;
PDBTitle: cryo-em structure of the yeast pre-b complex at an average resolution2 of 3.3 angstrom (part ii: u1 snrnp region)
30d1gjsa_



not modelled 6.3 13
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Bacterial immunoglobulin/albumin-binding domains
Family:GA module, an albumin-binding domain
31d1ej5a_



not modelled 5.7 53
Fold:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Superfamily:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Family:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
32c3iufA_



not modelled 5.5 25
PDB header:protein binding
Chain: A: PDB Molecule:zinc finger protein ubi-d4;
PDBTitle: crystal structure of the c2h2-type zinc finger domain of human ubi-d4
33c5uwaB_



not modelled 5.3 25
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
34d2htna1



not modelled 5.2 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
35c2qm0B_



not modelled 5.1 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:bes;
PDBTitle: crystal structure of bes protein from bacillus cereus

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