Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2061c_(-)_2316689_2317093
DateMon Aug 5 13:25:17 BST 2019
Unique Job IDa5ad0d79f1fbfeb1
SequenceVTPTFSDLAE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.204 Y:32.362 Z:42.276
Model (left) based on template c3f7eB_
Top template information
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
Confidence and coverage
Confidence: 99.9% Coverage: 87%
116 residues ( 87% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3f7eB_



99.9 21
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
2d1rfea_



99.9 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
3d2asfa1



99.9 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
4c2iabB_



99.9 23
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with fmn-binding split barrel fold2 (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
5c4zkyB_



99.9 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5-phosphate oxidase;
PDBTitle: structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
6d1w9aa_



99.9 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
7d2fg9a1



99.9 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
8c5escD_



99.9 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:hupz;
PDBTitle: crystal structure of group a streptococcus hupz
9c2re7A_



99.9 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase related2 protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a3 resolution
10c3tgvD_



99.9 14
PDB header:heme binding protein
Chain: D: PDB Molecule:heme-binding protein hutz;
PDBTitle: crystal structure of hutz,the heme storsge protein from vibrio2 cholerae
11d2i02a1



99.8 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
12c3db0B_



99.8 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:lin2891 protein;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution
13c3u0iA_



99.8 13
PDB header:unknown function
Chain: A: PDB Molecule:probable fad-binding, putative uncharacterized protein;
PDBTitle: crystal structure of a probable fad-binding, putative uncharacterized2 protein from brucella melitensis
14d2hq7a1



99.8 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
15d2htia1



99.8 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
16c2htiA_



99.8 15
PDB header:fmn-binding protein
Chain: A: PDB Molecule:bh0577 protein;
PDBTitle: crystal structure of a flavin-nucleotide-binding protein (bh_0577)2 from bacillus halodurans at 2.50 a resolution
17d1vl7a_



99.8 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
18d2hq9a1



99.8 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
19d2fhqa1



99.8 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
20c4ybnB_



99.8 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin-nucleotide-binding protein;
PDBTitle: structure of the fad and heme binding protein msmeg_4975 from2 mycobacterium smegmatis
21d2fura1



not modelled 99.8 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
22c3fkhB_



not modelled 99.8 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
23c6eciQ_



not modelled 99.8 16
PDB header:fad-binding protein
Chain: Q: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding
PDBTitle: structure of the fad binding protein msmeg_5243 from mycobacterium2 smegmatis
24c3ec6A_



not modelled 99.8 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 26;
PDBTitle: crystal structure of the general stress protein 26 from bacillus2 anthracis str. sterne
25c2hhzA_



not modelled 99.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution
26c2htdB_



not modelled 99.8 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:predicted flavin-nucleotide-binding protein from cog3576
PDBTitle: crystal structure of a putative pyridoxamine 5'-phosphate oxidase2 (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution
27c3u34D_



not modelled 99.8 16
PDB header:protein binding
Chain: D: PDB Molecule:general stress protein;
PDBTitle: crystal structure of the general stress fmn/fad binding protein from2 the phytopathogen xanthomonas citri
28c3dmbA_



not modelled 99.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
29c6rk0A_



not modelled 99.8 17
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the flavocytochrome anf3 from azotobacter vinelandii
30c2ig6B_



not modelled 99.7 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:nimc/nima family protein;
PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution
31d2vpaa1



not modelled 99.7 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
32c3cp3A_



not modelled 99.7 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae
33d1t9ma_



not modelled 99.7 22
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
34d1nrga_



not modelled 99.7 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
35c1nrgA_



not modelled 99.7 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase;
PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
36c2qeaB_



not modelled 99.7 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative general stress protein 26;
PDBTitle: crystal structure of a putative general stress protein 26 (jann_0955)2 from jannaschia sp. ccs1 at 2.46 a resolution
37d1ty9a_



not modelled 99.7 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
38c2q9kA_



not modelled 99.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution
39d2arza1



not modelled 99.7 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
40c5bncB_



not modelled 99.7 15
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
41d2a2ja1



not modelled 99.7 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
42d1dnla_



not modelled 99.7 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
43c2ou5B_



not modelled 99.6 19
PDB header:flavoprotein
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-2 binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 a3 resolution
44c4hmwB_



not modelled 99.6 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of phzg from burkholderia lata 383
45d1flma_



not modelled 99.6 22
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
46c2a2jA_



not modelled 99.6 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
47c3dnhB_



not modelled 99.6 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58
48c2ol5B_



not modelled 99.6 10
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
49c3gasA_



not modelled 99.5 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
50c2i51B_



not modelled 99.5 16
PDB header:flavoprotein
Chain: B: PDB Molecule:uncharacterized conserved protein of cog5135;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related, fmn2 binding protein (npun_f5749) from nostoc punctiforme pcc 73102 at3 1.40 a resolution
51d1ci0a_



not modelled 99.5 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
52c3h96B_



not modelled 99.3 19
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
53d1xhna1



not modelled 99.2 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
54c3r5yC_



not modelled 99.1 19
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
55c3r5zB_



not modelled 99.1 19
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
56c3r5wO_



not modelled 99.0 21
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
57c4y9iA_



not modelled 99.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
58c3ba3A_



not modelled 98.8 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-like protein;
PDBTitle: crystal structure of pyridoxamine 5'-phosphate oxidase-like protein2 (np_783940.1) from lactobacillus plantarum at 1.55 a resolution
59c4n7rD_



not modelled 98.5 17
PDB header:oxidoreductase/protein binding
Chain: D: PDB Molecule:genomic dna, chromosome 3, p1 clone: mxl8;
PDBTitle: crystal structure of arabidopsis glutamyl-trna reductase in complex2 with its binding protein
60d2ptfa1



not modelled 96.6 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
61c2ptfB_



not modelled 95.8 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein mth_863;
PDBTitle: crystal structure of protein mth_863 from methanobacterium2 thermoautotrophicum bound to fmn
62d2imla1



not modelled 95.1 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
63d1ejea_



not modelled 95.0 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
64c3b5mD_



not modelled 93.8 18
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved uncharacterized protein from2 rhodopirellula baltica
65c3fgeA_



not modelled 90.8 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative flavin reductase with split barrel domain;
PDBTitle: crystal structure of putative flavin reductase with split barrel2 domain (yp_750721.1) from shewanella frigidimarina ncimb 400 at 1.743 a resolution
66c2d5mA_



not modelled 88.3 19
PDB header:electron transport
Chain: A: PDB Molecule:flavoredoxin;
PDBTitle: flavoredoxin of desulfovibrio vulgaris (miyazaki f)
67c3e4vA_



not modelled 87.5 17
PDB header:flavoprotein
Chain: A: PDB Molecule:nadh:fmn oxidoreductase like protein;
PDBTitle: crystal structure of nadh:fmn oxidoreductase like protein in complex2 with fmn (yp_544701.1) from methylobacillus flagellatus kt at 1.40 a3 resolution
68c4z85A_



not modelled 87.4 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-nitrobenzoate nitroreductase;
PDBTitle: crystal structur of pseudomonas fluorescens 2-nitrobenzoate 2-2 nitroreductase nbaa
69c3bpkB_



not modelled 87.2 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase component b;
PDBTitle: crystal structure of nitrilotriacetate monooxygenase component b from2 bacillus cereus
70c4f07A_



not modelled 83.8 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:styrene monooxygenase component 2;
PDBTitle: structure of the styrene monooxygenase flavin reductase (smob) from2 pseudomonas putida s12
71c3bnkB_



not modelled 82.6 12
PDB header:electron transport
Chain: B: PDB Molecule:flavoredoxin;
PDBTitle: x-ray crystal structure of flavoredoxin from methanosarcina2 acetivorans
72c4xhyA_



not modelled 70.0 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein, fmn-binding protein;
PDBTitle: nadh:fmn oxidoreductase from paracoccus denitrificans
73d1usca_



not modelled 66.9 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
74d2nr4a1



not modelled 66.3 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
75c3cb0B_



not modelled 61.6 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxyphenylacetate 3-monooxygenase;
PDBTitle: cobr
76d1i0ra_



not modelled 57.3 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
77d1rz0a_



not modelled 45.2 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
78c2qckA_



not modelled 44.8 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein;
PDBTitle: crystal structure of flavin reductase domain protein (yp_831077.1)2 from arthrobacter sp. fb24 at 1.90 a resolution
79c3nfwB_



not modelled 42.3 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin reductase-like, fmn-binding protein;
PDBTitle: crystal structure of nitrilotriacetate monooxygenase component b2 (a0r521 homolog) from mycobacterium thermoresistibile
80c3rh7A_



not modelled 36.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution
81c3hmzA_



not modelled 36.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein, fmn-binding;
PDBTitle: crystal structure of a fmn-binding domain of flavin reductases-like2 enzyme (sbal_0626) from shewanella baltica os155 at 1.50 a resolution
82c2d38A_



not modelled 34.5 4
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical nadh-dependent fmn oxidoreductase;
PDBTitle: the crystal structure of flavin reductase hpac complexed with nadp+
83c3pftA_



not modelled 34.2 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase;
PDBTitle: crystal structure of untagged c54a mutant flavin reductase (dszd) in2 complex with fmn from mycobacterium goodii
84c3k87B_



not modelled 32.2 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:chlorophenol-4-monooxygenase component 1;
PDBTitle: crystal structure of nadh:fad oxidoreductase (tftc) - fad2 complex
85c2r0xA_



not modelled 30.6 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible flavin reductase;
PDBTitle: crystal structure of a putative flavin reductase (ycdh, hs_1225) from2 haemophilus somnus 129pt at 1.06 a resolution
86d2z1ca1



not modelled 26.4 21
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
87c2r6vA_



not modelled 20.6 10
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein ph0856;
PDBTitle: crystal structure of fmn-binding protein (np_142786.1) from pyrococcus2 horikoshii at 1.35 a resolution
88d1wgba_



not modelled 18.8 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
89c4l82D_



not modelled 15.8 9
PDB header:oxidoreductase
Chain: D: PDB Molecule:rifea.00250.a;
PDBTitle: structure of a putative oxidoreductase from rickettsia felis
90c2ecrA_



not modelled 14.7 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase component (hpac) of 4-hydroxyphenylacetate
PDBTitle: crystal structure of the ligand-free form of the flavin reductase2 component (hpac) of 4-hydroxyphenylacetate 3-monooxygenase
91c5vfkA_



not modelled 13.7 17
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of an archaeal duf61 family protein sso0941
92c1ksiA_



not modelled 10.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of a eukaryotic (pea seedling) copper-containing2 amine oxidase at 2.2a resolution
93c2ytxA_



not modelled 10.6 8
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein)
94c1ztgD_



not modelled 10.5 16
PDB header:dna, rna binding protein/dna
Chain: D: PDB Molecule:poly(rc)-binding protein 1;
PDBTitle: human alpha polyc binding protein kh1
95d1mzga_



not modelled 9.9 10
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
96d2axya1



not modelled 9.4 12
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
97c6mdxA_



not modelled 8.6 14
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:sprt-like domain-containing protein spartan;
PDBTitle: mechanism of protease dependent dpc repair
98d1ni7a_



not modelled 8.3 7
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
99c2wshC_



not modelled 7.9 18
PDB header:hydrolase
Chain: C: PDB Molecule:endonuclease ii;
PDBTitle: structure of bacteriophage t4 endoii e118a mutant

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