Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2064_(cobG)_2321459_2322550
DateMon Aug 5 13:25:17 BST 2019
Unique Job ID28c13beb9b2a3d7c
SequenceVAGTRDADAC ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:55.097 Y:56.332 Z:48.891
Model (left) based on template c1zj8B_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira;
PDBTitle: structure of mycobacterium tuberculosis nira protein
Confidence and coverage
Confidence:100.0% Coverage: 96%
349 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1zj8B_



100.0 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira;
PDBTitle: structure of mycobacterium tuberculosis nira protein
2c3b0nA_



100.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: q448k mutant of assimilatory nitrite reductase (nii3) from tobbaco2 leaf
3c2akjA_



100.0 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast;
PDBTitle: structure of spinach nitrite reductase
4c5h92A_



100.0 23
PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:sulfite reductase [ferredoxin], chloroplastic;
PDBTitle: crystal structure of the complex between maize sulfite reductase and2 ferredoxin in the form-3 crystal
5c5aopA_



100.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase hemoprotein;
PDBTitle: sulfite reductase structure reduced with crii edta, 5-coordinate2 siroheme, siroheme feii, [4fe-4s] +1
6c2v4jE_



100.0 18
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
7c3c7bE_



100.0 17
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
8c2v4jA_



100.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
9c3c7bA_



100.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
10d1zj8a4



99.9 17
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
11d2akja4



99.9 17
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
12d1aopa3



99.9 13
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
13d3c7ba3



99.9 13
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
14d2v4ja3



99.9 14
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
15d2akja2



99.9 30
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
16d1zj8a2



99.9 30
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
17d2v4jb3



99.8 17
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
18d3c7bb2



99.8 22
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
19d3c7bb3



99.8 13
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
20d2v4jb2



99.8 15
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
21d1zj8a1



not modelled 99.8 14
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
22d1aopa1



not modelled 99.8 34
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
23d1zj8a3



not modelled 99.7 20
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
24d2akja3



not modelled 99.7 16
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
25d2akja1



not modelled 99.6 25
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
26d1aopa2



not modelled 99.6 19
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
27d1aopa4



not modelled 99.5 15
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
28c3noyA_



not modelled 99.1 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
29d3c7ba2



not modelled 98.1 17
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
30c2y0fD_



not modelled 96.1 15
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27
31d2v4ja2



not modelled 95.9 17
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
32c3w9zA_



not modelled 49.1 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:trna-dihydrouridine synthase c;
PDBTitle: crystal structure of dusc
33c4qboA_



not modelled 46.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:nuclease;
PDBTitle: vrr_nuc domain
34c5hcdD_



not modelled 43.5 44
PDB header:immune system
Chain: D: PDB Molecule:rhipicephalus microplus raci2;
PDBTitle: ternary complex of human complement c5 with ornithodoros moubata omci2 and rhipicephalus microplus raci2
35d1n7ka_



not modelled 38.1 15
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
36c1b8hA_



not modelled 32.8 25
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase processivity component;
PDBTitle: sliding clamp, dna polymerase
37c1r1gA_



not modelled 31.9 43
PDB header:toxin
Chain: A: PDB Molecule:neurotoxin bmk37;
PDBTitle: crystal structure of the scorpion toxin bmbkttx1
38d1r1ga_



not modelled 31.9 43
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
39c1r1gB_



not modelled 31.9 43
PDB header:toxin
Chain: B: PDB Molecule:neurotoxin bmk37;
PDBTitle: crystal structure of the scorpion toxin bmbkttx1
40c6gcsH_



not modelled 29.6 18
PDB header:oxidoreductase
Chain: H: PDB Molecule:24-kda subunit (nuhm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
41d1tx2a_



not modelled 29.4 22
Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
42c1tx2A_



not modelled 29.4 22
PDB header:transferase
Chain: A: PDB Molecule:dhps, dihydropteroate synthase;
PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis
43c5lnk2_



not modelled 28.7 18
PDB header:oxidoreductase
Chain: 2: PDB Molecule:mitochondrial complex i, 24 kda subunit;
PDBTitle: entire ovine respiratory complex i
44c5hccD_



not modelled 26.6 43
PDB header:immune system
Chain: D: PDB Molecule:dermacentor andersoni raci3;
PDBTitle: ternary complex of human complement c5 with ornithodoros moubata omci2 and dermacentor andersoni raci3.
45c4qbnA_



not modelled 25.5 11
PDB header:hydrolase
Chain: A: PDB Molecule:nuclease;
PDBTitle: vrr_nuc domain
46c5iecA_



not modelled 23.6 44
PDB header:blood clotting
Chain: A: PDB Molecule:raci2;
PDBTitle: structural basis for therapeutic inhibition of complement c5
47d1olta_



not modelled 20.3 19
Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Oxygen-independent coproporphyrinogen III oxidase HemN
48d1czda2



not modelled 18.7 27
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
49c4xbsA_



not modelled 18.0 11
PDB header:lyase
Chain: A: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: 2-deoxyribose-5-phosphate aldolase mutant - e78k
50d1pvza_



not modelled 17.2 36
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
51c1pvzA_



not modelled 17.2 36
PDB header:toxin
Chain: A: PDB Molecule:k+ toxin-like peptide;
PDBTitle: solution structure of bmp07, a novel potassium channel blocker from2 scorpion buthus martensi karsch, 15 structures
52d1ad1a_



not modelled 17.2 15
Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
53c2h9aB_



not modelled 16.2 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron-sulfur protein;
PDBTitle: corrinoid iron-sulfur protein
54d1qnta2



not modelled 15.4 30
Fold:Ribonuclease H-like motif
Superfamily:Methylated DNA-protein cysteine methyltransferase domain
Family:Methylated DNA-protein cysteine methyltransferase domain
55d1r8na_



not modelled 15.4 9
Fold:beta-Trefoil
Superfamily:STI-like
Family:Kunitz (STI) inhibitors
56c5lc5E_



not modelled 14.7 19
PDB header:oxidoreductase
Chain: E: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 2,
PDBTitle: structure of mammalian respiratory complex i, class2
57d1b77a2



not modelled 14.3 27
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
58d1xwva_



not modelled 14.0 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:ML domain
59c5abrB_



not modelled 13.9 20
PDB header:electron transport
Chain: B: PDB Molecule:ferredoxin, 2fe-2s;
PDBTitle: structure of fesi protein from azotobacter vinelandii
60d1tg7a5



not modelled 13.2 22
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Glycosyl hydrolases family 35 catalytic domain
61d2fug21



not modelled 13.1 15
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:NQO2-like
62c3nqoB_



not modelled 12.9 16
PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
63c4e8cA_



not modelled 12.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase, family 35;
PDBTitle: crystal structure of streptococcal beta-galactosidase in complex with2 galactose
64d1ffgb_



not modelled 12.6 21
Fold:Ferredoxin-like
Superfamily:CheY-binding domain of CheA
Family:CheY-binding domain of CheA
65c6cluC_



not modelled 12.2 13
PDB header:antimicrobial protein
Chain: C: PDB Molecule:dihydropteroate synthase;
PDBTitle: staphylococcus aureus dihydropteroate synthase (sadhps) f17l e208k2 double mutant structure
66d1p4xa2



not modelled 12.1 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
67d2j5pa1



not modelled 11.7 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FtsK C-terminal domain-like
68c2h90A_



not modelled 11.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:xenobiotic reductase a;
PDBTitle: xenobiotic reductase a in complex with coumarin
69d1ktja_



not modelled 11.4 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:ML domain
70c4z9rA_



not modelled 11.3 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:omega-3 polyunsaturated fatty acid synthase subunit pfad;
PDBTitle: crystal structure of pfad from shewanella oneidensis in complex with2 nad+ determined by in-situ diffraction.
71c4qblF_



not modelled 11.2 21
PDB header:hydrolase
Chain: F: PDB Molecule:vrr-nuc;
PDBTitle: vrr_nuc domain protein
72d1mzha_



not modelled 11.2 3
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
73d1hpca_



not modelled 10.7 18
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
74c3k13A_



not modelled 10.4 13
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase;
PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron
75d1ub3a_



not modelled 10.4 23
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
76c5dbuI_



not modelled 10.2 9
PDB header:lyase
Chain: I: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of 2-deoxyribose-5-phosphate aldolase (1-220) from2 streptococcus suis
77c3lf4A_



not modelled 10.0 17
PDB header:fluorescent protein
Chain: A: PDB Molecule:fluorescent timer precursor blue102;
PDBTitle: crystal structure of fluorescent timer precursor blue102
78c2a56A_



not modelled 9.8 8
PDB header:luminescent protein
Chain: A: PDB Molecule:gfp-like non-fluorescent chromoprotein fp595 chain 1;
PDBTitle: fluorescent protein asfp595, a143s, on-state, 5min irradiation
79c4yn3B_



not modelled 9.7 19
PDB header:hydrolase
Chain: B: PDB Molecule:cucumisin;
PDBTitle: crystal structure of cucumisin complex with pro-peptide
80d1yaaa_



not modelled 9.4 14
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
81d1udka_



not modelled 9.4 33
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Elafin-like
Family:Elafin-like
82d2gcxa1



not modelled 9.3 21
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
83c4nm6A_



not modelled 9.3 31
PDB header:oxidoreductase/dna
Chain: A: PDB Molecule:methylcytosine dioxygenase tet2;
PDBTitle: crystal structure of tet2-dna complex
84d3broa1



not modelled 9.2 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
85d1u5ka1



not modelled 9.2 26
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:RecO N-terminal domain-like
86d3c8ya1



not modelled 9.1 24
Fold:Fe-only hydrogenase
Superfamily:Fe-only hydrogenase
Family:Fe-only hydrogenase
87c6feyK_



not modelled 9.0 25
PDB header:peptide binding protein
Chain: K: PDB Molecule:probable insulin-like peptide 5;
PDBTitle: crystal structure of drosophila neural ectodermal development factor2 imp-l2 with drosophila dilp5 insulin
88d2okqa1



not modelled 8.9 20
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:YbaA-like
89c2k9oA_



not modelled 8.9 50
PDB header:toxin
Chain: A: PDB Molecule:vm24 scorpion toxin;
PDBTitle: solution structure of vm24 synthetic scorpion toxin
90c3d3jA_



not modelled 8.9 35
PDB header:protein binding
Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
91c3d3kD_



not modelled 8.9 35
PDB header:protein binding
Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
92c3ngjC_



not modelled 8.8 9
PDB header:lyase
Chain: C: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 entamoeba histolytica
93c3t18D_



not modelled 8.7 5
PDB header:transferase
Chain: D: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548.
94c5dleD_



not modelled 8.7 6
PDB header:transferase
Chain: D: PDB Molecule:pts system, fructose-specific iiabc component;
PDBTitle: crystal structure from a domain (thr161-f265) from fructose-specific2 iiabc component (pts system) from borrelia burgdorferi
95c6hl2C_



not modelled 8.7 15
PDB header:electron transport
Chain: C: PDB Molecule:nadh-quinone oxidoreductase subunit e;
PDBTitle: wild-type nuoef from aquifex aeolicus - oxidized form
96d2ve8a1



not modelled 8.5 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FtsK C-terminal domain-like
97c1a0oH_



not modelled 8.5 21
PDB header:chemotaxis
Chain: H: PDB Molecule:chea;
PDBTitle: chey-binding domain of chea in complex with chey
98d1fxda_



not modelled 8.5 25
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
99d1vmfa_



not modelled 8.5 39
Fold:YjbQ-like
Superfamily:YjbQ-like
Family:YjbQ-like

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