Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2065_(cobH)_2322560_2323186
DateMon Aug 5 13:25:17 BST 2019
Unique Job ID2fb6930fa44eb45b
SequenceVLDYLRDAAE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:55.320 Y:40.646 Z:49.359
Model (left) based on template d1f2va_
Top template information
Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
Confidence and coverage
Confidence:100.0% Coverage: 99%
205 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1f2va_
100.0 55
Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
2c3e7dC_
100.0 57
PDB header:isomerase
Chain: C: PDB Molecule:cobh, precorrin-8x methylmutase;
PDBTitle: crystal structure of precorrin-8x methyl mutase cbic/cobh from2 brucella melitensis
3c4au1A_
100.0 51
PDB header:isomerase
Chain: A: PDB Molecule:precorrin-8x methylmutase;
PDBTitle: crystal structure of cobh (precorrin-8x methyl mutase)2 complexed with c5 desmethyl-hba
4c2afvB_
100.0 29
PDB header:isomerase
Chain: B: PDB Molecule:cobalamin biosynthesis precorrin isomerase;
PDBTitle: the crystal structure of putative precorrin isomerase cbic2 in cobalamin biosynthesis
5d1ou0a_
100.0 34
Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
6d1v9ca_
100.0 36
Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
7d1miob_
88.5 9
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
8c5kojD_
88.0 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitrogenase femo beta subunit protein nifk;
PDBTitle: nitrogenase mofep protein in the ids oxidized state
9d2ji7a1
85.9 22
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
10d1ovma1
85.9 12
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
11d1ybha1
83.5 21
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
12d1zpda1
82.3 13
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
13d1ozha1
82.0 17
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
14d2djia1
79.9 19
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
15d1pvda1
79.8 16
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
16d1qh8b_
78.0 14
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
17d2ihta1
74.6 23
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
18c3aerB_
74.4 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark
19d2ez9a1
70.6 18
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
20d1m1nb_
68.6 16
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
21c2ynmD_
not modelled 66.9 24
PDB header:oxidoreductase
Chain: D: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the adpxalf3-stabilized transition state of the2 nitrogenase-like dark-operative protochlorophyllide oxidoreductase3 complex from prochlorococcus marinus with its substrate4 protochlorophyllide a
22d1t9ba1
not modelled 65.7 15
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
23c3cf4G_
not modelled 58.1 4
PDB header:oxidoreductase
Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
24c5n6yE_
not modelled 56.2 14
PDB header:oxidoreductase
Chain: E: PDB Molecule:nitrogenase vanadium-iron protein beta chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
25d1q6za1
not modelled 49.5 22
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
26c2rnjA_
not modelled 41.4 8
PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: nmr structure of the s. aureus vrar dna binding domain
27d3bofa1
not modelled 39.0 14
Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Methyltetrahydrofolate-utiluzing methyltransferases
28d1qh8a_
not modelled 38.9 21
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
29c4grdA_
not modelled 37.8 23
PDB header:lyase,isomerase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from burkholderia cenocepacia j2315
30c4wzzA_
not modelled 37.8 14
PDB header:transport protein
Chain: A: PDB Molecule:putative sugar abc transporter, substrate-binding protein;
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from clostridium phytofermentas (cphy_0583, target efi-3 511148) with bound l-rhamnose
31d1mioa_
not modelled 36.5 27
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
32d1jcea1
not modelled 36.3 20
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
33c1zljE_
not modelled 34.6 11
PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
34c4rjjB_
not modelled 34.4 15
PDB header:lyase
Chain: B: PDB Molecule:acetolactate synthase;
PDBTitle: acetolactate synthase from bacillus subtilis bound to thdp - crystal2 form ii
35c2xdqB_
not modelled 34.2 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-chlb)2 complex
36d1m1na_
not modelled 34.1 18
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
37d1a9xa2
not modelled 34.1 16
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
38c1zpdA_
not modelled 32.2 13
PDB header:alcohol fermentation
Chain: A: PDB Molecule:pyruvate decarboxylase;
PDBTitle: pyruvate decarboxylase from zymomonas mobilis
39c1ozhD_
not modelled 31.6 17
PDB header:lyase
Chain: D: PDB Molecule:acetolactate synthase, catabolic;
PDBTitle: the crystal structure of klebsiella pneumoniae acetolactate2 synthase with enzyme-bound cofactor and with an unusual3 intermediate.
40c2krfB_
not modelled 30.8 5
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
41c2vbgB_
not modelled 30.5 11
PDB header:lyase
Chain: B: PDB Molecule:branched-chain alpha-ketoacid decarboxylase;
PDBTitle: the complex structure of the branched-chain keto acid2 decarboxylase (kdca) from lactococcus lactis with 2r-1-3 hydroxyethyl-deazathdp
42c1powA_
not modelled 29.8 20
PDB header:oxidoreductase(oxygen as acceptor)
Chain: A: PDB Molecule:pyruvate oxidase;
PDBTitle: the refined structures of a stabilized mutant and of wild-type2 pyruvate oxidase from lactobacillus plantarum
43c6o55B_
not modelled 28.9 25
PDB header:isomerase
Chain: B: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 (pure) from legionella pneumophila
44d1a04a1
not modelled 28.3 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
45c2ji6B_
not modelled 28.2 22
PDB header:lyase
Chain: B: PDB Molecule:oxalyl-coa decarboxylase;
PDBTitle: x-ray structure of oxalyl-coa decarboxylase in complex with 3-deaza-2 thdp and oxalyl-coa
46c1ovmC_
not modelled 27.7 11
PDB header:lyase
Chain: C: PDB Molecule:indole-3-pyruvate decarboxylase;
PDBTitle: crystal structure of indolepyruvate decarboxylase from2 enterobacter cloacae
47c5z2fA_
not modelled 27.5 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: nadph/pda bound dihydrodipicolinate reductase from paenisporosarcina2 sp. tg-14
48d1p4wa_
not modelled 27.0 5
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
49c4ww4B_
not modelled 26.3 16
PDB header:hydrolase
Chain: B: PDB Molecule:ruvb-like 2;
PDBTitle: double-heterohexameric rings of full-length rvb1(adp)/rvb2(adp)
50c3sftA_
not modelled 25.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of thermotoga maritima cheb methylesterase catalytic2 domain
51d1o4va_
not modelled 25.4 20
Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
52c4ja0A_
not modelled 25.2 20
PDB header:protein binding
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase;
PDBTitle: crystal structure of the invertebrate bi-functional purine2 biosynthesis enzyme paics at 2.8 a resolution
53c2nxwB_
not modelled 25.2 19
PDB header:lyase
Chain: B: PDB Molecule:phenyl-3-pyruvate decarboxylase;
PDBTitle: crystal structure of phenylpyruvate decarboxylase of azospirillum2 brasilense
54c3pdiB_
not modelled 24.3 24
PDB header:protein binding
Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn;
PDBTitle: precursor bound nifen
55c3ib7A_
not modelled 23.9 26
PDB header:hydrolase
Chain: A: PDB Molecule:icc protein;
PDBTitle: crystal structure of full length rv0805
56c5tenH_
not modelled 23.6 20
PDB header:oxidoreductase
Chain: H: PDB Molecule:4-hydroxy-tetrahydrodipicolinate reductase;
PDBTitle: structure of 4-hydroxy-tetrahydrodipicolinate reductase from vibrio2 vulnificus with 2,5 furan dicarboxylic and nadh with intact3 polyhistidine tag
57d1l3la1
not modelled 23.6 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
58c2fw9A_
not modelled 23.0 23
PDB header:lyase
Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8
59c2vbiF_
not modelled 22.8 19
PDB header:lyase
Chain: F: PDB Molecule:pyruvate decarboxylase;
PDBTitle: holostructure of pyruvate decarboxylase from acetobacter pasteurianus
60c2w93A_
not modelled 22.8 15
PDB header:lyase
Chain: A: PDB Molecule:pyruvate decarboxylase isozyme 1;
PDBTitle: crystal structure of the saccharomyces cerevisiae pyruvate2 decarboxylase variant e477q in complex with the surrogate pyruvamide
61d1u11a_
not modelled 22.7 23
Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
62c2h31A_
not modelled 21.5 20
PDB header:ligase, lyase
Chain: A: PDB Molecule:multifunctional protein ade2;
PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis
63d2fsja2
not modelled 20.6 15
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ta0583-like
64c2yvqA_
not modelled 20.6 14
PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase;
PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens
65c6gcsK_
not modelled 20.6 24
PDB header:oxidoreductase
Chain: K: PDB Molecule:psst subunit (nukm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
66c2panF_
not modelled 20.4 17
PDB header:lyase
Chain: F: PDB Molecule:glyoxylate carboligase;
PDBTitle: crystal structure of e. coli glyoxylate carboligase
67d1d7ya1
not modelled 20.3 20
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
68d2hk6a1
not modelled 20.1 20
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
69c3rggD_
not modelled 19.6 19
PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein;
PDBTitle: crystal structure of treponema denticola pure bound to air
70c1yi1A_
not modelled 18.9 21
PDB header:transferase
Chain: A: PDB Molecule:acetolactate synthase;
PDBTitle: crystal structure of arabidopsis thaliana acetohydroxyacid synthase in2 complex with a sulfonylurea herbicide, tribenuron methyl
71c2pgnA_
not modelled 18.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:cyclohexane-1,2-dione hydrolase (cdh);
PDBTitle: the crystal structure of fad and thdp-dependent cyclohexane-1,2-dione2 hydrolase in complex with cyclohexane-1,2-dione
72c1upaC_
not modelled 18.1 23
PDB header:synthase
Chain: C: PDB Molecule:carboxyethylarginine synthase;
PDBTitle: carboxyethylarginine synthase from streptomyces2 clavuligerus (semet structure)
73c2djiA_
not modelled 18.1 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate oxidase;
PDBTitle: crystal structure of pyruvate oxidase from aerococcus2 viridans containing fad
74c4e21B_
not modelled 18.1 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:6-phosphogluconate dehydrogenase (decarboxylating);
PDBTitle: the crystal structure of 6-phosphogluconate dehydrogenase from2 geobacter metallireducens
75d1chda_
not modelled 18.0 21
Fold:Methylesterase CheB, C-terminal domain
Superfamily:Methylesterase CheB, C-terminal domain
Family:Methylesterase CheB, C-terminal domain
76c3sztB_
not modelled 17.8 6
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
77c3sajB_
not modelled 17.8 12
PDB header:transport protein
Chain: B: PDB Molecule:glutamate receptor 1;
PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain
78c2jzfA_
not modelled 17.8 23
PDB header:viral protein
Chain: A: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: nmr conformer closest to the mean coordinates of the domain 513-651 of2 the sars-cov nonstructural protein nsp3
79c4oaqA_
not modelled 16.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:r-specific carbonyl reductase;
PDBTitle: crystal structure of the r-specific carbonyl reductase from candida2 parapsilosis atcc 7330
80c6humK_
not modelled 16.7 24
PDB header:proton transport
Chain: K: PDB Molecule:nad(p)h-quinone oxidoreductase subunit k;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
81c3q3hA_
not modelled 16.4 10
PDB header:transferase
Chain: A: PDB Molecule:hmw1c-like glycosyltransferase;
PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc
82c4b4kK_
not modelled 16.3 21
PDB header:isomerase
Chain: K: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of bacillus anthracis pure
83d1xmpa_
not modelled 16.0 21
Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
84d2hrca1
not modelled 15.5 15
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
85c6ioxB_
not modelled 15.2 18
PDB header:transferase
Chain: B: PDB Molecule:phosphotransacetylase;
PDBTitle: crystal structure of porphyromonas gingivalis phosphotransacetylase in2 complex with acetyl-coa
86d1zfja1
not modelled 14.7 26
Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
87c5yw2D_
not modelled 14.6 16
PDB header:transferase
Chain: D: PDB Molecule:adenine phosphoribosyltransferase;
PDBTitle: crystal structure of adenine phosphoribosyltransferase from2 francisella tularensis.
88d1qcza_
not modelled 14.3 25
Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
89c4cpdA_
not modelled 14.1 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase;
PDBTitle: alcohol dehydrogenase tadh from thermus sp. atn1
90c2kqvA_
not modelled 13.9 16
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: sars coronavirus-unique domain (sud): three-domain molecular2 architecture in solution and rna binding. i: structure of the sud-m3 domain of sud-mc
91c4lfuA_
not modelled 13.5 6
PDB header:dna binding protein
Chain: A: PDB Molecule:regulatory protein sdia;
PDBTitle: crystal structure of escherichia coli sdia in the space group c2
92d1k4ia_
not modelled 13.5 16
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
93d1zcha1
not modelled 13.4 28
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
94d1vm6a3
not modelled 13.4 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
95c3lp6D_
not modelled 13.4 23
PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
96c4ffjA_
not modelled 13.3 33
PDB header:lyase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribba;
PDBTitle: the crystal structure of spdhbps from s.pneumoniae
97c1m6vE_
not modelled 13.3 17
PDB header:ligase
Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain;
PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
98d3bzka5
not modelled 13.2 26
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Tex RuvX-like domain-like
99d1snna_
not modelled 13.2 33
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB

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