Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2066_(cobI)_2323183_2324709
DateMon Aug 5 13:25:18 BST 2019
Unique Job ID875169cdbbb18639
SequenceMSARGTLWGV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.609 Y:58.192 Z:57.476
Model (left) based on template c3nutC_
Top template information
PDB header:transferase
Chain: C: PDB Molecule:precorrin-3 methylase;
PDBTitle: crystal structure of the methyltransferase cobj
Confidence and coverage
Confidence:100.0% Coverage: 47%
239 residues ( 47% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
488 residues ( 96%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3nutC_



100.0 44
PDB header:transferase
Chain: C: PDB Molecule:precorrin-3 methylase;
PDBTitle: crystal structure of the methyltransferase cobj
2c2zvbA_



100.0 40
PDB header:transferase
Chain: A: PDB Molecule:precorrin-3 c17-methyltransferase;
PDBTitle: crystal structure of tt0207 from thermus thermophilus hb8
3c2e0kA_



100.0 29
PDB header:transferase
Chain: A: PDB Molecule:precorrin-2 c20-methyltransferase;
PDBTitle: crystal structure of cbil, a methyltransferase involved in anaerobic2 vitamin b12 biosynthesis
4c1pjtB_



100.0 22
PDB header:transferase/oxidoreductase/lyase
Chain: B: PDB Molecule:siroheme synthase;
PDBTitle: the structure of the ser128ala point-mutant variant of cysg, the2 multifunctional methyltransferase/dehydrogenase/ferrochelatase for3 siroheme synthesis
5c2yboA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: the x-ray structure of the sam-dependent uroporphyrinogen2 iii methyltransferase nire from pseudomonas aeruginosa in3 complex with sah
6c2qbuA_



100.0 33
PDB header:transferase
Chain: A: PDB Molecule:precorrin-2 methyltransferase;
PDBTitle: crystal structure of methanothermobacter thermautotrophicus cbil
7d1s4da_



100.0 20
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
8d1cbfa_



100.0 20
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
9c1cbfA_



100.0 20
PDB header:methyltransferase
Chain: A: PDB Molecule:cobalt-precorrin-4 transmethylase;
PDBTitle: the x-ray structure of a cobalamin biosynthetic enzyme, cobalt2 precorrin-4 methyltransferase, cbif
10d1pjqa2



100.0 23
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
11c3kwpA_



100.0 16
PDB header:transferase
Chain: A: PDB Molecule:predicted methyltransferase;
PDBTitle: crystal structure of putative methyltransferase from lactobacillus2 brevis
12c3ndcB_



100.0 23
PDB header:transferase
Chain: B: PDB Molecule:precorrin-4 c(11)-methyltransferase;
PDBTitle: crystal structure of precorrin-4 c11-methyltransferase from2 rhodobacter capsulatus
13c4e16A_



100.0 17
PDB header:transferase
Chain: A: PDB Molecule:precorrin-4 c(11)-methyltransferase;
PDBTitle: precorrin-4 c(11)-methyltransferase from clostridium difficile
14d1ve2a1



100.0 26
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
15d1va0a1



100.0 26
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
16c5hw4C_



100.0 19
PDB header:transferase
Chain: C: PDB Molecule:ribosomal rna small subunit methyltransferase i;
PDBTitle: crystal structure of escherichia coli 16s rrna methyltransferase rsmi2 in complex with adomet
17c3nd1B_



100.0 22
PDB header:transferase
Chain: B: PDB Molecule:precorrin-6a synthase/cobf protein;
PDBTitle: crystal structure of precorrin-6a synthase from rhodobacter capsulatus
18d1wyza1



100.0 13
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
19c2npnA_



100.0 18
PDB header:transferase
Chain: A: PDB Molecule:putative cobalamin synthesis related protein;
PDBTitle: crystal structure of putative cobalamin synthesis related protein2 (cobf) from corynebacterium diphtheriae
20d2deka1



100.0 18
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
21c5n0sA_



not modelled 100.0 16
PDB header:transferase
Chain: A: PDB Molecule:peptide n-methyltransferase;
PDBTitle: crystal structure of opha-deltac6 mutant y98a in complex with sam
22d1vhva_



not modelled 100.0 15
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
23c3i4tA_



not modelled 100.0 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:diphthine synthase;
PDBTitle: crystal structure of putative diphthine synthase from entamoeba2 histolytica
24d1wdea_



not modelled 100.0 25
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
25c2bb3B_



not modelled 100.0 24
PDB header:transferase
Chain: B: PDB Molecule:cobalamin biosynthesis precorrin-6y methylase (cbie);
PDBTitle: crystal structure of cobalamin biosynthesis precorrin-6y methylase2 (cbie) from archaeoglobus fulgidus
26d2bb3a1



not modelled 100.0 25
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
27c3hh1D_



not modelled 99.9 21
PDB header:transferase
Chain: D: PDB Molecule:tetrapyrrole methylase family protein;
PDBTitle: the structure of a tetrapyrrole methylase family protein domain from2 chlorobium tepidum tls
28c3fq6A_



not modelled 98.6 16
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: the crystal structure of a methyltransferase domain from bacteroides2 thetaiotaomicron vpi
29c3vndD_



not modelled 93.6 16
PDB header:lyase
Chain: D: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha-subunit from the2 psychrophile shewanella frigidimarina k14-2
30c5ey5A_



not modelled 90.9 17
PDB header:lyase
Chain: A: PDB Molecule:lbcats-a;
PDBTitle: lbcats
31c3navB_



not modelled 88.7 15
PDB header:lyase
Chain: B: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961
32c5kzmA_



not modelled 88.3 13
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha-beta chain complex from2 francisella tularensis
33c2ekcA_



not modelled 79.4 12
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
34d1qopa_



not modelled 72.9 17
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
35d1q7sa_



not modelled 72.0 28
Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
36c2d3kA_



not modelled 70.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3
37d3erja1



not modelled 63.5 21
Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
38c4bucA_



not modelled 58.7 15
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: crystal structure of murd ligase from thermotoga maritima in apo form
39c3zq4C_



not modelled 56.5 16
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease j 1;
PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1
40c3fpjA_



not modelled 56.1 13
PDB header:biosynthetic protein, transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of e81q mutant of mtnas in complex with s-2 adenosylmethionine
41c5k9xA_



not modelled 55.7 13
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha chain from legionella2 pneumophila subsp. pneumophila
42c1xtyD_



not modelled 54.6 20
PDB header:hydrolase
Chain: D: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of sulfolobus solfataricus peptidyl-trna hydrolase
43c6c4nB_



not modelled 53.3 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:pseudopaline dehydrogenase;
PDBTitle: pseudopaline dehydrogenase (paodh) - nadp+ bound
44c3b1fA_



not modelled 51.4 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative prephenate dehydrogenase;
PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 mutans
45d2p1ra1



not modelled 50.8 18
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
46c3k30B_



not modelled 46.9 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex
47d2jfga2



not modelled 46.1 15
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
48d1rlka_



not modelled 44.9 21
Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
49c2a5hC_



not modelled 43.2 19
PDB header:isomerase
Chain: C: PDB Molecule:l-lysine 2,3-aminomutase;
PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate).
50c4txkA_



not modelled 40.3 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein-methionine sulfoxide oxidase mical1;
PDBTitle: construct of mical-1 containing the monooxygenase and calponin2 homology domains
51d2o8ra3



not modelled 40.2 15
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
52c2zv3E_



not modelled 40.2 25
PDB header:hydrolase
Chain: E: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of project mj0051 from methanocaldococcus2 jannaschii dsm 2661
53c5th5C_



not modelled 38.3 7
PDB header:lyase
Chain: C: PDB Molecule:7-carboxy-7-deazaguanine synthase;
PDBTitle: crystal structure of quee from bacillus subtilis with 6-carboxypterin-2 5'-deoxyadenosyl ester bound
54d2hzba1



not modelled 37.6 14
Fold:CofD-like
Superfamily:CofD-like
Family:CofD-like
55c5zbyA_



not modelled 36.6 12
PDB header:hydrolase
Chain: A: PDB Molecule:hydrogenase maturation protease hyci;
PDBTitle: crystal structure of a [nife] hydrogenase maturation protease hyci2 from thermococcus kodakarensis kod1
56c3mvnA_



not modelled 35.9 15
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-medo-
PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamyl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp
57c2q7xA_



not modelled 35.8 15
PDB header:transferase
Chain: A: PDB Molecule:upf0052 protein sp_1565;
PDBTitle: crystal structure of a putative phospho transferase (sp_1565) from2 streptococcus pneumoniae tigr4 at 2.00 a resolution
58c5jg7A_



not modelled 33.2 20
PDB header:metal transport
Chain: A: PDB Molecule:fur regulated salmonella iron transporter;
PDBTitle: crystal structure of putative periplasmic binding protein from2 salmonella typhimurium lt2
59c3l7oB_



not modelled 32.8 27
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159
60d1cfza_



not modelled 32.7 17
Fold:Phosphorylase/hydrolase-like
Superfamily:HybD-like
Family:Hydrogenase maturating endopeptidase HybD
61c2ppvA_



not modelled 32.4 16
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein belonging to the upf0052 (se_0549) from2 staphylococcus epidermidis atcc 12228 at 2.00 a resolution
62c1lkzB_



not modelled 31.4 11
PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase a;
PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia) from2 escherichia coli.
63c3rp7A_



not modelled 31.1 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavoprotein monooxygenase;
PDBTitle: crystal structure of klebsiella pneumoniae hpxo complexed with fad and2 uric acid
64c6c4rA_



not modelled 30.3 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:staphylopine dehydrogenase;
PDBTitle: staphylopine dehydrogenase (saodh) - apo
65c4xwwA_



not modelled 30.2 18
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:dr2417;
PDBTitle: crystal structure of rnase j complexed with rna
66d2bona1



not modelled 29.0 17
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
67c5v1tA_



not modelled 28.8 12
PDB header:metal binding protein
Chain: A: PDB Molecule:radical sam;
PDBTitle: crystal structure of streptococcus suis suib bound to precursor2 peptide suia
68c3lk7A_



not modelled 28.5 13
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-glutamate2 (murd) ligase from streptococcus agalactiae to 1.5a
69c4mjsQ_



not modelled 27.1 25
PDB header:transferase/protein binding
Chain: Q: PDB Molecule:protein kinase c zeta type;
PDBTitle: crystal structure of a pb1 complex
70c1vqwB_



not modelled 26.6 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein with similarity to flavin-containing
PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases
71d2qv7a1



not modelled 26.3 20
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
72c3en0A_



not modelled 25.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:cyanophycinase;
PDBTitle: the structure of cyanophycinase
73c2r6r1_



not modelled 25.4 13
PDB header:cell cycle
Chain: 1: PDB Molecule:cell division protein ftsz;
PDBTitle: aquifex aeolicus ftsz
74c6c8vA_



not modelled 25.1 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme pqq synthesis protein e;
PDBTitle: x-ray structure of pqqe from methylobacterium extorquens
75d1ve5a1



not modelled 25.0 13
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
76c3qfeB_



not modelled 24.2 13
PDB header:lyase
Chain: B: PDB Molecule:putative dihydrodipicolinate synthase family protein;
PDBTitle: crystal structures of a putative dihydrodipicolinate synthase family2 protein from coccidioides immitis
77c1w59B_



not modelled 23.2 16
PDB header:cell division
Chain: B: PDB Molecule:cell division protein ftsz homolog 1;
PDBTitle: ftsz dimer, empty (m. jannaschii)
78c4d9gA_



not modelled 23.1 19
PDB header:lyase
Chain: A: PDB Molecule:putative diaminopropionate ammonia-lyase;
PDBTitle: crystal structure of selenomethionine incorporated holo2 diaminopropionate ammonia lyase from escherichia coli
79d1wu2a3



not modelled 22.2 13
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
80c5u57B_



not modelled 21.5 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:(s)-2-hydroxypropylphosphonic acid epoxidase;
PDBTitle: psf4 in complex with fe2+ and (s)-2-hpp
81c3ktsA_



not modelled 21.2 11
PDB header:transcriptional regulator
Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein;
PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365
82c2bonB_



not modelled 21.1 22
PDB header:transferase
Chain: B: PDB Molecule:lipid kinase;
PDBTitle: structure of an escherichia coli lipid kinase (yegs)
83d2vapa1



not modelled 20.8 16
Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
84c2o8rA_



not modelled 20.7 15
PDB header:transferase
Chain: A: PDB Molecule:polyphosphate kinase;
PDBTitle: crystal structure of polyphosphate kinase from porphyromonas2 gingivalis
85d1xdpa3



not modelled 20.5 15
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
86c5t8xA_



not modelled 20.3 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:prephenate dehydrogenase 1;
PDBTitle: prephenate dehydrogenase from soybean
87c1xdoB_



not modelled 20.2 14
PDB header:transferase
Chain: B: PDB Molecule:polyphosphate kinase;
PDBTitle: crystal structure of escherichia coli polyphosphate kinase
88c2e1mA_



not modelled 20.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-glutamate oxidase;
PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6
89d2bfdb2



not modelled 19.7 28
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
90d1pjqa1



not modelled 19.7 17
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Siroheme synthase N-terminal domain-like
91c3kwmC_



not modelled 19.3 15
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-isomerase a
92c5dboA_



not modelled 19.2 9
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of the tetrameric eif2b-beta2-delta2 complex from c.2 thermophilum
93d1ps9a3



not modelled 18.7 18
Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:N-terminal domain of adrenodoxin reductase-like
94c3vzdB_



not modelled 18.6 16
PDB header:transferase/inhibitor
Chain: B: PDB Molecule:sphingosine kinase 1;
PDBTitle: crystal structure of sphingosine kinase 1 with inhibitor and adp
95c3h14A_



not modelled 18.6 20
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
96c2qv7A_



not modelled 18.5 15
PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase dgkb;
PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg
97d2ffea1



not modelled 18.4 13
Fold:CofD-like
Superfamily:CofD-like
Family:CofD-like
98d1kyqa1



not modelled 18.4 11
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Siroheme synthase N-terminal domain-like
99c1fncA_



not modelled 18.3 9
PDB header:oxidoreductase (nadp+(a),ferredoxin(a))
Chain: A: PDB Molecule:ferredoxin-nadp+ reductase;
PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states

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