Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2076c_(-)_2333045_2333296
DateMon Aug 5 13:25:19 BST 2019
Unique Job ID9abc223965213b38
SequenceVVVCLIGGVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.964 Y:29.867 Z:28.373
Model (left) based on template c6n3qD_
Top template information
PDB header:transport protein
Chain: D: PDB Molecule:protein translocation protein sec63;
PDBTitle: cryo-em structure of the yeast sec complex
Confidence and coverage
Confidence: 47.3% Coverage: 34%
28 residues ( 34% of your sequence) have been modelled with 47.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6n3qD_



47.3 14
PDB header:transport protein
Chain: D: PDB Molecule:protein translocation protein sec63;
PDBTitle: cryo-em structure of the yeast sec complex
2c6nd1A_



42.1 17
PDB header:protein transport
Chain: A: PDB Molecule:protein translocation protein sec63;
PDBTitle: cryoem structure of the sec complex from yeast
3c2dfxI_



33.1 30
PDB header:hydrolase
Chain: I: PDB Molecule:colicin-e5 immunity protein;
PDBTitle: crystal structure of the carboxy terminal domain of colicin2 e5 complexed with its inhibitor
4c6g67A_



17.2 56
PDB header:de novo protein
Chain: A: PDB Molecule:cc-type2-ii;
PDBTitle: crystal structure of a parallel eight-helix coiled coil cc-type2-ii
5c6g67B_



17.2 56
PDB header:de novo protein
Chain: B: PDB Molecule:cc-type2-ii;
PDBTitle: crystal structure of a parallel eight-helix coiled coil cc-type2-ii
6c3gekA_



14.4 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thioesterase yhda;
PDBTitle: crystal structure of putative thioesterase yhda from lactococcus2 lactis. northeast structural genomics consortium target kr113
7c6g66C_



13.4 56
PDB header:de novo protein
Chain: C: PDB Molecule:cc-type2-iv;
PDBTitle: crystal structure of a parallel seven-helix coiled coil cc-type2-iv
8c6g66D_



13.4 56
PDB header:de novo protein
Chain: D: PDB Molecule:cc-type2-iv;
PDBTitle: crystal structure of a parallel seven-helix coiled coil cc-type2-iv
9c6g66E_



13.4 56
PDB header:de novo protein
Chain: E: PDB Molecule:cc-type2-iv;
PDBTitle: crystal structure of a parallel seven-helix coiled coil cc-type2-iv
10c6g66B_



13.4 56
PDB header:de novo protein
Chain: B: PDB Molecule:cc-type2-iv;
PDBTitle: crystal structure of a parallel seven-helix coiled coil cc-type2-iv
11c6g66G_



13.4 56
PDB header:de novo protein
Chain: G: PDB Molecule:cc-type2-iv;
PDBTitle: crystal structure of a parallel seven-helix coiled coil cc-type2-iv
12c6g66A_



13.4 56
PDB header:de novo protein
Chain: A: PDB Molecule:cc-type2-iv;
PDBTitle: crystal structure of a parallel seven-helix coiled coil cc-type2-iv
13c6g66F_



13.4 56
PDB header:de novo protein
Chain: F: PDB Molecule:cc-type2-iv;
PDBTitle: crystal structure of a parallel seven-helix coiled coil cc-type2-iv
14d2f0xa1



12.8 15
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:PaaI/YdiI-like
15c1zmmA_



11.6 100
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of human alpha-defensin-4
16c1zmmC_



11.6 100
PDB header:antimicrobial protein
Chain: C: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of human alpha-defensin-4
17c6dmqE_



11.5 100
PDB header:antimicrobial protein
Chain: E: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of the t27a mutant of human alpha defensin hnp4.
18c6dmqH_



11.5 100
PDB header:antimicrobial protein
Chain: H: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of the t27a mutant of human alpha defensin hnp4.
19c6dmqC_



11.5 100
PDB header:antimicrobial protein
Chain: C: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of the t27a mutant of human alpha defensin hnp4.
20c6dmqG_



11.5 100
PDB header:antimicrobial protein
Chain: G: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of the t27a mutant of human alpha defensin hnp4.
21c6dmqA_



not modelled 11.4 100
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of the t27a mutant of human alpha defensin hnp4.
22c1zmmB_



not modelled 11.1 100
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of human alpha-defensin-4
23c1zmmD_



not modelled 11.1 100
PDB header:antimicrobial protein
Chain: D: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of human alpha-defensin-4
24c6dmqB_



not modelled 11.1 100
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of the t27a mutant of human alpha defensin hnp4.
25c6dmqD_



not modelled 11.1 100
PDB header:antimicrobial protein
Chain: D: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of the t27a mutant of human alpha defensin hnp4.
26c6dmqF_



not modelled 11.1 100
PDB header:antimicrobial protein
Chain: F: PDB Molecule:neutrophil defensin 4;
PDBTitle: crystal structure of the t27a mutant of human alpha defensin hnp4.
27c2l35B_



not modelled 10.7 47
PDB header:protein binding
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12-nkg2c transmembrane heterotrimer
28c4wolA_



not modelled 10.1 47
PDB header:signaling protein
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
29c2l34A_



not modelled 10.1 47
PDB header:protein binding
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12 transmembrane homodimer
30c2l34B_



not modelled 10.1 47
PDB header:protein binding
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12 transmembrane homodimer
31c4wolC_



not modelled 9.9 47
PDB header:signaling protein
Chain: C: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
32c4wolB_



not modelled 9.9 47
PDB header:signaling protein
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
33c4wo1B_



not modelled 9.9 47
PDB header:signaling protein
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
34c4wo1D_



not modelled 9.9 47
PDB header:signaling protein
Chain: D: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
35c4wo1C_



not modelled 9.9 47
PDB header:signaling protein
Chain: C: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
36c4wo1A_



not modelled 9.9 47
PDB header:signaling protein
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
37d1vh5a_



not modelled 9.4 19
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:PaaI/YdiI-like
38d1j1ua_



not modelled 7.9 20
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
39c5nmiK_



not modelled 7.7 36
PDB header:membrane protein
Chain: K: PDB Molecule:arg-asn-trp-val-pro-thr-ala-gln-leu-trp-gly-ala-val-gly-
PDBTitle: cytochrome bc1 bound to the inhibitor mjm170
40c5nmiX_



not modelled 7.7 36
PDB header:membrane protein
Chain: X: PDB Molecule:arg-asn-trp-val-pro-thr-ala-gln-leu-trp-gly-ala-val-gly-
PDBTitle: cytochrome bc1 bound to the inhibitor mjm170
41d1be3k_



not modelled 7.7 36
Fold:Single transmembrane helix
Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
42c5dm5E_



not modelled 7.1 19
PDB header:hydrolase
Chain: E: PDB Molecule:putative acyl-coa thioester hydrolase;
PDBTitle: crystal structure of the hexameric thioesterase y2039 from yersinia2 pestis
43c2ynmD_



not modelled 6.6 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the adpxalf3-stabilized transition state of the2 nitrogenase-like dark-operative protochlorophyllide oxidoreductase3 complex from prochlorococcus marinus with its substrate4 protochlorophyllide a
44c6humQ_



not modelled 6.5 47
PDB header:proton transport
Chain: Q: PDB Molecule:proton-translocating nadh-quinone dehydrogenase subunit q
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
45c2qwzB_



not modelled 6.2 30
PDB header:hydrolase
Chain: B: PDB Molecule:phenylacetic acid degradation-related protein;
PDBTitle: crystal structure of a putative thioesterase (tm1040_1390) from2 silicibacter sp. tm1040 at 2.15 a resolution
46c6bqzA_



not modelled 6.1 13
PDB header:ligase
Chain: A: PDB Molecule:tyrosine--trna ligase;
PDBTitle: crystal structure of tyrosine-trna synthetase from acinetobacter2 baumannii with bound l-tyrosine
47d2gvha2



not modelled 6.0 32
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:4HBT-like
48c2qg5D_



not modelled 5.9 40
PDB header:transferase
Chain: D: PDB Molecule:calcium/calmodulin-dependent protein kinase;
PDBTitle: cryptosporidium parvum calcium dependent protein kinase cgd7_1840
49c2ts1A_



not modelled 5.6 17
PDB header:ligase (synthetase)
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: structure of tyrosyl-t/rna synthetase refined at 2.3 angstroms2 resolution. interaction of the enzyme with the tyrosyl adenylate3 intermediate
50d2ts1a_



not modelled 5.6 17
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
51c5vdkA_



not modelled 5.5 50
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:wee1-like protein kinase 2;
PDBTitle: crystal structure of human wee2 kinase domain in complex with mk1775
52d1vh9a_



not modelled 5.5 21
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:PaaI/YdiI-like
53c3p1aA_



not modelled 5.5 55
PDB header:transferase
Chain: A: PDB Molecule:membrane-associated tyrosine- and threonine-specific cdc2-
PDBTitle: structure of human membrane-associated tyrosine- and threonine-2 specific cdc2-inhibitory kinase myt1 (pkmyt1)
54c3c0hB_



not modelled 5.3 30
PDB header:transferase
Chain: B: PDB Molecule:peripheral plasma membrane protein cask;
PDBTitle: cask cam-kinase domain- amppnp complex, p1 form
55c2jq1A_



not modelled 5.2 71
PDB header:antimicrobial protein
Chain: A: PDB Molecule:phylloseptin-3;
PDBTitle: phylloseptin-3

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below