Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2077Bc_(RVBD2077Bc)_2334860_2335030
DateMon Aug 5 13:25:19 BST 2019
Unique Job IDd7eaa58cca7da0ca
SequenceVDLTIKSPCG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:13.401 Y:27.680 Z:15.932
Model (left) based on template d2fnoa1
Top template information
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
Confidence and coverage
Confidence: 34.0% Coverage: 32%
18 residues ( 32% of your sequence) have been modelled with 34.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2fnoa1
34.0 50
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
2d1uw0a_
25.0 44
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:PARP-type zinc finger
3c4oc8D_
23.4 29
PDB header:hydrolase
Chain: D: PDB Molecule:restriction endonuclease aspbhi;
PDBTitle: dna modification-dependent restriction endonuclease aspbhi
4c2cs2A_
19.0 56
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1;
PDBTitle: solution structure of the second zn-finger domain of2 poly(adp-ribose) polymerase-1
5c2n8aA_
15.9 29
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: 1h, 13c and 15n chemical shift assignments and solution structure for2 parp-1 f1f2 domains in complex with a dna single-strand break
6c4oc8A_
14.2 29
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease aspbhi;
PDBTitle: dna modification-dependent restriction endonuclease aspbhi
7d1ok0a_
14.1 50
Fold:alpha-Amylase inhibitor tendamistat
Superfamily:alpha-Amylase inhibitor tendamistat
Family:alpha-Amylase inhibitor tendamistat
8c1v9xA_
13.9 24
PDB header:transferase
Chain: A: PDB Molecule:poly (adp-ribose) polymerase;
PDBTitle: solution structure of the first zn-finger domain of2 poly(adp-ribose) polymerase-1
9c2vy2A_
12.8 53
PDB header:transcription
Chain: A: PDB Molecule:protein leafy;
PDBTitle: structure of leafy transcription factor from arabidopsis2 thaliana in complex with dna from ag-i promoter
10c4av1C_
12.0 33
PDB header:transferase
Chain: C: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: crystal structure of the human parp-1 dna binding domain in2 complex with dna
11c3odeA_
10.6 56
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: human parp-1 zinc finger 2 (zn2) bound to dna
12c4f0qC_
9.7 31
PDB header:hydrolase
Chain: C: PDB Molecule:restriction endonuclease;
PDBTitle: mspji restriction endonuclease - p21 form
13c4f0qA_
9.6 31
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease;
PDBTitle: mspji restriction endonuclease - p21 form
14c2kxrA_
9.5 19
PDB header:protein binding
Chain: A: PDB Molecule:tight junction protein zo-1;
PDBTitle: zo1 zu5 domain mc/aa mutation
15c2dmjA_
8.7 40
PDB header:transferase
Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 1;
PDBTitle: solution structure of the first zf-parp domain of human2 poly(adp-ribose)polymerase-1
16c1oy5B_
8.1 71
PDB header:transferase
Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus
17d1oy5a_
7.9 71
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
18c3quvB_
7.8 86
PDB header:transferase
Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus
19d1uala_
7.7 86
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
20c5wyrA_
7.7 71
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure and catalytic mechanism of the essential m1g37 trna2 methyltransferase trmd from pseudomonas aeruginosa
21c3ky7A_
not modelled 7.4 57
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252
22c3knuD_
not modelled 7.3 86
PDB header:transferase
Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum
23c3iefA_
not modelled 7.0 71
PDB header:transferase, rna binding protein
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna guanine-n1-methyltransferase from bartonella2 henselae using mpcs.
24d1p9pa_
not modelled 7.0 86
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
25d2gxba1
not modelled 6.9 50
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
26c4h3zA_
not modelled 6.8 71
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of a symmetric dimer of a trna (guanine-(n(1)-)-2 methyltransferase from burkholderia phymatum bound to s-adenosyl3 homocystein in both half-sites
27d1qbjc_
not modelled 6.8 50
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
28c2kxsA_
not modelled 6.7 36
PDB header:protein binding
Chain: A: PDB Molecule:tight junction protein zo-1, linker, peptide of myocardium-
PDBTitle: zo1 zu5 domain in complex with grinl1a peptide
29c4a0tB_
not modelled 6.6 63
PDB header:viral protein
Chain: B: PDB Molecule:tail fiber protein;
PDBTitle: structure of the carboxy-terminal domain of bacteriophage t7 fibre2 gp17 containing residues 371-553.
30c5bthA_
not modelled 6.5 57
PDB header:hydrolase
Chain: A: PDB Molecule:decapping nuclease rai1;
PDBTitle: crystal structure of candida albicans rai1
31d1qgpa_
not modelled 6.3 50
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
32c6g13B_
not modelled 6.2 22
PDB header:viral protein
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: c-terminal domain of mers-cov nucleocapsid
33c5wtiZ_
not modelled 6.2 36
PDB header:hydrolase/dna/rna
Chain: Z: PDB Molecule:crispr-associated protein;
PDBTitle: crystal structure of the crispr-associated protein in complex with2 crrna and dna
34d1qoua_
not modelled 6.1 43
Fold:PEBP-like
Superfamily:PEBP-like
Family:Phosphatidylethanolamine binding protein
35d2cjra1
not modelled 6.1 25
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
36c5a2gB_
not modelled 6.0 14
PDB header:hydrolase
Chain: B: PDB Molecule:carboxylic ester hydrolase;
PDBTitle: an esterase from anaerobic clostridium hathewayi can2 hydrolyze aliphatic aromatic polyesters
37c4btpI_
not modelled 5.9 64
PDB header:viral protein
Chain: I: PDB Molecule:p1;
PDBTitle: structure of the capsid protein p1 of the bacteriophage phi8
38d2eifa1
not modelled 5.9 57
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
39c4xhiB_
not modelled 5.7 33
PDB header:transcription
Chain: B: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of native thosea asigna virus rna-dependent rna2 polymerase (rdrp) at 2.15 angstrom resolution
40c4my4A_
not modelled 5.7 56
PDB header:isomerase
Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate
PDBTitle: crystal structure of phosphoglycerate mutase from staphylococcus2 aureus.
41c2e30B_
not modelled 5.6 50
PDB header:metal binding protein/transport protein
Chain: B: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: solution structure of the cytoplasmic region of na+/h+2 exchanger 1 complexed with essential cofactor calcineurin3 b homologous protein 1
42d1tdha3
not modelled 5.6 31
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
43d2b5id2
not modelled 5.5 50
Fold:Complement control module/SCR domain
Superfamily:Complement control module/SCR domain
Family:Complement control module/SCR domain
44c3j38h_
not modelled 5.5 57
PDB header:ribosome
Chain: H: PDB Molecule:40s ribosomal protein s7;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
45c3fqgA_
not modelled 5.4 43
PDB header:protein binding
Chain: A: PDB Molecule:protein din1;
PDBTitle: crystal structure of the s. pombe rai1
46c2xtzB_
not modelled 5.3 44
PDB header:hydrolase
Chain: B: PDB Molecule:guanine nucleotide-binding protein alpha-1 subunit;
PDBTitle: crystal structure of the g alpha protein atgpa1 from arabidopsis2 thaliana
47c2kdvA_
not modelled 5.3 26
PDB header:hydrolase
Chain: A: PDB Molecule:rna pyrophosphohydrolase;
PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli
48c5btoA_
not modelled 5.2 50
PDB header:hydrolase
Chain: A: PDB Molecule:ssrai1;
PDBTitle: crystal structure of scheffersomyces stipitis rai1
49d1iz6a1
not modelled 5.2 57
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
50c6dknA_
not modelled 5.2 57
PDB header:hydrolase
Chain: A: PDB Molecule:decapping nuclease dxo homolog, chloroplastic;
PDBTitle: crystal structure of arabidopsis thaliana decapping nuclease dxo1
51c5btbA_
not modelled 5.1 57
PDB header:hydrolase
Chain: A: PDB Molecule:afr263cp;
PDBTitle: crystal structure of ashbya gossypii rai1
52d1vi7a1
not modelled 5.1 55
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:YigZ N-terminal domain-like
53d1bkba1
not modelled 5.1 71
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
54d1g03a_
not modelled 5.0 64
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain

Binding site prediction 

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