Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2077c_(-)_2333331_2334302
DateMon Aug 5 13:25:19 BST 2019
Unique Job ID9a2cf034d76ee35d
SequenceMLATLSQIRA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:75.888 Y:34.918 Z:21.051
Model (left) based on template c3gvmA_
Top template information
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
Confidence and coverage
Confidence: 98.2% Coverage: 27%
86 residues ( 27% of your sequence) have been modelled with 98.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3gvmA_



98.2 15
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
2c3zbhC_



98.1 14
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
3c4iogD_



98.1 16
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
4c2vs0B_



98.1 13
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
5c2g38B_



97.8 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
6d2g38b1



97.8 12
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
7c4lwsA_



97.8 13
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
8d1wa8a1



97.6 17
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
9c4lwsB_



97.5 11
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
10d1wa8b1



97.5 16
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c5xfsB_



97.2 13
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
12c4i0xJ_



96.4 14
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
13c2kg7B_



95.7 11
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
14c4i0xA_



94.9 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
15c4wj2A_



93.9 17
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
16c4xy3A_



89.5 13
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
17c2eapA_



56.1 22
PDB header:signaling protein
Chain: A: PDB Molecule:lymphocyte cytosolic protein 2;
PDBTitle: solution structure of the n-terminal sam-domain of human2 lymphocyte cytosolic protein 2
18c5j1hB_



19.7 19
PDB header:structural protein
Chain: B: PDB Molecule:plectin,plectin;
PDBTitle: structure of the spectrin repeats 5 and 6 of the plakin domain of2 plectin
19c6cg8A_



15.8 17
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:upf0335 protein b7z12_12435;
PDBTitle: structure of c. crescentus gapr-dna
20c2mwqA_



13.7 24
PDB header:plant protein
Chain: A: PDB Molecule:oxygen-evolving enhancer protein 3, chloroplastic;
PDBTitle: solution structure of psbq from spinacia oleracea
21c4wxmD_



not modelled 12.8 37
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator fleq;
PDBTitle: fleq rec domain from pseudomonas aeruginosa pao1
22c4gwpB_



not modelled 11.1 10
PDB header:transcription
Chain: B: PDB Molecule:mediator of rna polymerase ii transcription subunit 17;
PDBTitle: structure of the mediator head module from s. cerevisiae
23c6cfxD_



not modelled 10.5 15
PDB header:dna binding protein
Chain: D: PDB Molecule:upf0335 protein ase63_04290;
PDBTitle: bosea sp gapr solved in the presence of dna
24d1q08a_



not modelled 10.2 11
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
25c2phcB_



not modelled 9.5 38
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
26d1dfma_



not modelled 9.3 9
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease BglII
27c5dudB_



not modelled 8.1 38
PDB header:unknown function
Chain: B: PDB Molecule:ybgj;
PDBTitle: crystal structure of e. coli ybgjk
28c1mi1A_



not modelled 7.9 26
PDB header:signaling protein
Chain: A: PDB Molecule:neurobeachin;
PDBTitle: crystal structure of the ph-beach domain of human2 neurobeachin
29c2zp2B_



not modelled 7.7 50
PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
30c4nncA_



not modelled 7.5 16
PDB header:lyase
Chain: A: PDB Molecule:obca, oxalate biosynthetic component a;
PDBTitle: ternary complex of obca with c4-coa adduct and oxalate
31d2phcb1



not modelled 7.4 38
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
32c5yrzC_



not modelled 7.1 6
PDB header:antitoxin/hydrolase
Chain: C: PDB Molecule:hicb;
PDBTitle: toxin-antitoxin complex from streptococcus pneumoniae
33c3mmlD_



not modelled 7.0 25
PDB header:hydrolase
Chain: D: PDB Molecule:allophanate hydrolase subunit 1;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
34c3cjxE_



not modelled 6.7 11
PDB header:unknown function
Chain: E: PDB Molecule:protein of unknown function with a cupin-like fold;
PDBTitle: crystal structure of a protein of unknown function with a cupin-like2 fold (reut_b4571) from ralstonia eutropha jmp134 at 2.60 a resolution
35c5aeoA_



not modelled 6.5 26
PDB header:immune system
Chain: A: PDB Molecule:r. equi vapg protein;
PDBTitle: virulence-associated protein vapg from the intracellular2 pathogen rhodococcus equi
36c3pm7A_



not modelled 6.4 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ef_3132 protein from enterococcus faecalis at the2 resolution 2a, northeast structural genomics consortium target efr184
37c3obhA_



not modelled 6.1 75
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: x-ray crystal structure of protein sp_0782 (7-79) from streptococcus2 pneumoniae. northeast structural genomics consortium target spr104
38c4csbA_



not modelled 5.8 30
PDB header:unknown function
Chain: A: PDB Molecule:virulence associated protein vapd;
PDBTitle: structure of the virulence-associated protein vapd from the2 intracellular pathogen rhodococcus equi.
39c3r84O_



not modelled 5.7 23
PDB header:transcription
Chain: O: PDB Molecule:mediator of rna polymerase ii transcription subunit 11;
PDBTitle: structure of the mediator head subcomplex med11/22
40c2ltdA_



not modelled 5.6 63
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ydbc;
PDBTitle: solution nmr structure of apo ydbc from lactococcus lactis, northeast2 structural genomics consortium (nesg) target kr150
41c5nf2A_



not modelled 5.6 23
PDB header:cell adhesion
Chain: A: PDB Molecule:minor fimbrium subunit mfa1;
PDBTitle: the fimbrial shaft protein mfa1 from porphyromonas gingivalis
42c1ygyA_



not modelled 5.3 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis
43c2l3aA_



not modelled 5.3 75
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of homodimer protein sp_0782 (7-79) from2 streptococcus pneumoniae northeast structural genomics consortium3 target spr104 .
44c4cv7A_



not modelled 5.1 22
PDB header:toxin
Chain: A: PDB Molecule:virulence associated protein vapb;
PDBTitle: crystal structure of rhodococcus equi vapb
45d1mi1a1



not modelled 5.1 22
Fold:BEACH domain
Superfamily:BEACH domain
Family:BEACH domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite