Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2080_(lppJ)_2337314_2337877
DateMon Aug 5 13:25:19 BST 2019
Unique Job IDfabf5d9b4a137734
SequenceMPHSTADRRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.797 Y:27.422 Z:34.588
Model (left) based on template d1q8ra_
Top template information
Fold:Bacillus chorismate mutase-like
Superfamily:Holliday junction resolvase RusA
Family:Holliday junction resolvase RusA
Confidence and coverage
Confidence: 59.5% Coverage: 32%
59 residues ( 32% of your sequence) have been modelled with 59.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1q8ra_
59.5 17
Fold:Bacillus chorismate mutase-like
Superfamily:Holliday junction resolvase RusA
Family:Holliday junction resolvase RusA
2d2ag4a1
44.8 22
Fold:Ganglioside M2 (gm2) activator
Superfamily:Ganglioside M2 (gm2) activator
Family:Ganglioside M2 (gm2) activator
3c1zzgB_
36.8 28
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8
4c2q8nB_
34.9 32
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec 5.3.1.9)2 (tm1385) from thermotoga maritima at 1.82 a resolution
5c3pr3B_
34.1 28
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate
6c1t10A_
33.7 28
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate
7c6bzcA_
33.2 22
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of glucose-6-phosphate isomerase from2 elizabethkingia anophelis with bound glucose-6-phosphate
8c2o2cB_
32.9 22
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal;
PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site
9d1hm5a_
31.8 33
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
10c2wu8A_
31.6 22
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv
11d1u0fa_
31.4 33
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
12c4qfhA_
30.8 28
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: structure of a glucose-6-phosphate isomerase from trypanosoma cruzi
13c3ljkA_
30.7 28
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: glucose-6-phosphate isomerase from francisella tularensis.
14d1c7qa_
30.5 33
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
15c4em6D_
30.5 28
PDB header:isomerase
Chain: D: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: the structure of glucose-6-phosphate isomerase (gpi) from brucella2 melitensis
16c3hjbA_
29.8 28
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae.
17d1gzda_
29.6 33
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
18d1q50a_
29.1 28
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
19c3nbuC_
29.1 28
PDB header:isomerase
Chain: C: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of pgi glucosephosphate isomerase
20c3ujhB_
28.9 28
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii
21d1iata_
not modelled 27.6 33
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
22c6otuA_
not modelled 26.3 22
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of a glucose-6-phosphate isomerase from chlamydia2 trachomatis d/uw-3/cx
23c4hzbA_
not modelled 25.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
24c3ff1B_
not modelled 24.2 22
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus
25c2l25A_
not modelled 23.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: np_888769.1
26c4r3zB_
not modelled 21.9 24
PDB header:protein binding/ligase
Chain: B: PDB Molecule:arginine--trna ligase, cytoplasmic;
PDBTitle: crystal structure of human argrs-glnrs-aimp1 complex
27d1xrsb2
not modelled 20.1 20
Fold:Dodecin subunit-like
Superfamily:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
Family:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
28c3ijrF_
not modelled 19.2 24
PDB header:oxidoreductase
Chain: F: PDB Molecule:oxidoreductase, short chain dehydrogenase/reductase family;
PDBTitle: 2.05 angstrom resolution crystal structure of a short chain2 dehydrogenase from bacillus anthracis str. 'ames ancestor' in complex3 with nad+
29d1nzea_
not modelled 16.8 19
Fold:Four-helical up-and-down bundle
Superfamily:Oxygen-evolving enhancer protein 3,
Family:Oxygen-evolving enhancer protein 3,
30c1nzeA_
not modelled 16.8 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxygen-evolving enhancer protein 3;
PDBTitle: crystal structure of psbq polypeptide of photosystem ii2 from higher plants
31c3koxA_
not modelled 15.4 16
PDB header:metal binding protein
Chain: A: PDB Molecule:d-ornithine aminomutase e component;
PDBTitle: crystal structure of ornithine 4,5 aminomutase in complex with 2,4-2 diaminobutyrate (anaerobic)
32c3mkxC_
not modelled 15.2 63
PDB header:antiviral protein
Chain: C: PDB Molecule:bone marrow stromal antigen 2;
PDBTitle: crystal structure of bst2/tetherin
33c5twaA_
not modelled 14.8 14
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-x homologous protein, bhp2;
PDBTitle: crystal structure of geodia cydonium bhp2 in complex with lubomirskia2 baicalensis bak-2
34d1wjfa_
not modelled 14.7 57
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
35c3ni0A_
not modelled 14.6 75
PDB header:immune system
Chain: A: PDB Molecule:bone marrow stromal antigen 2;
PDBTitle: crystal structure of mouse bst-2/tetherin ectodomain
36d1mxaa3
not modelled 13.7 19
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
37d2b4ya1
not modelled 13.3 27
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
38c2nx8A_
not modelled 13.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:trna-specific adenosine deaminase;
PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes
39d2hiqa1
not modelled 12.4 22
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Hypothetical protein YdhR
40d1z3aa1
not modelled 11.4 16
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
41c4ce4S_
not modelled 11.4 15
PDB header:ribosome
Chain: S: PDB Molecule:mrpl18;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
42c2mwqA_
not modelled 10.8 20
PDB header:plant protein
Chain: A: PDB Molecule:oxygen-evolving enhancer protein 3, chloroplastic;
PDBTitle: solution structure of psbq from spinacia oleracea
43d1oisa_
not modelled 10.8 32
Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
44d1k4ta3
not modelled 10.7 32
Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
45d2o3bb1
not modelled 10.4 21
Fold:Nuclease A inhibitor (NuiA)
Superfamily:Nuclease A inhibitor (NuiA)
Family:Nuclease A inhibitor (NuiA)
46d1rbli_
not modelled 10.4 50
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
47c3ddcB_
not modelled 10.1 20
PDB header:hydrolase/apoptosis
Chain: B: PDB Molecule:ras association domain-containing family protein 5;
PDBTitle: crystal structure of nore1a in complex with ras
48d1p1ja1
not modelled 10.0 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
49c3uc7E_
not modelled 9.9 40
PDB header:de novo protein
Chain: E: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
50c2jl8S_
not modelled 9.7 31
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l18;
PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome (part 4 of 4).3 this file contains the 50s subunit.
51c2m9xA_
not modelled 9.5 12
PDB header:transferase
Chain: A: PDB Molecule:microtubule-associated serine/threonine-protein kinase 1;
PDBTitle: solution nmr structure of microtubule-associated serine/threonine-2 protein kinase 1 from homo sapiens, northeast structural genomics3 consortium (nesg) target hr9151a
52c3uc7F_
not modelled 9.3 40
PDB header:de novo protein
Chain: F: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
53c3uc8B_
not modelled 9.3 40
PDB header:de novo protein
Chain: B: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - tetragonal crystal form
54c3uc7D_
not modelled 9.3 40
PDB header:de novo protein
Chain: D: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
55c3uc8A_
not modelled 9.3 40
PDB header:de novo protein
Chain: A: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - tetragonal crystal form
56c3uc7A_
not modelled 9.3 40
PDB header:de novo protein
Chain: A: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
57c3uc8C_
not modelled 9.3 40
PDB header:de novo protein
Chain: C: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - tetragonal crystal form
58c2ll5A_
not modelled 9.2 40
PDB header:de novo protein
Chain: A: PDB Molecule:cyclo-tc1;
PDBTitle: cyclo-tc1 trp-cage
59c5mz2I_
not modelled 9.2 50
PDB header:photosynthesis
Chain: I: PDB Molecule:rubisco small subunit;
PDBTitle: rubisco from thalassiosira antarctica
60c3uc7B_
not modelled 9.2 40
PDB header:de novo protein
Chain: B: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
61c3uc7C_
not modelled 9.2 40
PDB header:de novo protein
Chain: C: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
62c2ahqA_
not modelled 9.1 27
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: solution structure of the c-terminal rpon domain of sigma-2 54 from aquifex aeolicus
63d1gk8i_
not modelled 9.0 67
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
64d1vkoa1
not modelled 8.7 39
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
65d1svdm1
not modelled 8.6 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
66c3rv2B_
not modelled 8.6 24
PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum
67c3civA_
not modelled 8.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius
68d2j01s1
not modelled 8.5 31
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
69c4obyA_
not modelled 8.4 19
PDB header:ligase
Chain: A: PDB Molecule:arginine--trna ligase;
PDBTitle: crystal structure of e.coli arginyl-trna synthetase and ligand binding2 studies revealed key residues in arginine recognition
70c3imlB_
not modelled 8.4 24
PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei
71c2ns2B_
not modelled 8.4 37
PDB header:cell cycle
Chain: B: PDB Molecule:spindlin-1;
PDBTitle: crystal structure of spindlin1
72d1qm4a1
not modelled 8.2 19
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
73c4odjA_
not modelled 8.2 24
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of a putative s-adenosylmethionine synthetase from2 cryptosporidium hominis in complex with s-adenosyl-methionine
74c4er8A_
not modelled 8.1 10
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:tnparep for protein;
PDBTitle: structure of the rep associates tyrosine transposase bound to a rep2 hairpin
75d1qm4a3
not modelled 8.1 13
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
76c3o2iB_
not modelled 7.9 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein from2 leptospirillum sp. group ii uba
77c1jloA_
not modelled 7.8 67
PDB header:toxin
Chain: A: PDB Molecule:psi-conotoxin piiie;
PDBTitle: solution structure of the noncompetitive skeletal muscle nicotinic2 acetylcholine receptor antagonist psi-conotoxin piiie
78d1ylxa1
not modelled 7.8 22
Fold:N domain of copper amine oxidase-like
Superfamily:GK1464-like
Family:GK1464-like
79d1ou8a_
not modelled 7.6 25
Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB
80c2ybvN_
not modelled 7.6 42
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus
81c1y80A_
not modelled 7.5 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted cobalamin binding protein;
PDBTitle: structure of a corrinoid (factor iiim)-binding protein from moorella2 thermoacetica
82c2ns2A_
not modelled 7.4 37
PDB header:cell cycle
Chain: A: PDB Molecule:spindlin-1;
PDBTitle: crystal structure of spindlin1
83d1w6ga2
not modelled 7.4 9
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
84c5y4gA_
not modelled 7.4 11
PDB header:transferase
Chain: A: PDB Molecule:ambp3;
PDBTitle: apo structure of ambp3
85c1jlpA_
not modelled 7.3 67
PDB header:toxin
Chain: A: PDB Molecule:psi-conotoxin piiif;
PDBTitle: solution structure of the noncompetitive skeletal muscle2 nicotinic acetylcholine receptor antagonist psi-conotoxin3 piiif
86d1wdds_
not modelled 7.3 33
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
87c1as5A_
not modelled 7.1 67
PDB header:neurotoxin
Chain: A: PDB Molecule:conotoxin y-piiie;
PDBTitle: solution structure of conotoxin y-piiie from conus2 purpurascens, nmr, 14 structures
88c5o60P_
not modelled 7.1 21
PDB header:ribosome
Chain: P: PDB Molecule:50s ribosomal protein l18;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
89d1bwvs_
not modelled 7.0 42
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
90c3fhaD_
not modelled 7.0 26
PDB header:hydrolase
Chain: D: PDB Molecule:endo-beta-n-acetylglucosaminidase;
PDBTitle: structure of endo-beta-n-acetylglucosaminidase a
91d2p02a3
not modelled 6.9 13
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
92c4ee7A_
not modelled 6.9 14
PDB header:transferase
Chain: A: PDB Molecule:prenyltransferase;
PDBTitle: crystal structure of the novel phenazine prenyltransferase epzp in2 complex with s-thiolodiphosphate (methylated)
93c2o8kA_
not modelled 6.8 27
PDB header:transcription/dna
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element
94d1xuba2
not modelled 6.8 12
Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:PhzC/PhzF-like
95c2b9sA_
not modelled 6.6 26
PDB header:isomerase/dna
Chain: A: PDB Molecule:topoisomerase i-like protein;
PDBTitle: crystal structure of heterodimeric l. donovani topoisomerase i-2 vanadate-dna complex
96d2p02a1
not modelled 6.6 19
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
97c4ndvB_
not modelled 6.6 24
PDB header:sugar binding protein
Chain: B: PDB Molecule:alpha-galactosyl-binding lectin;
PDBTitle: crystal structure of l. decastes alpha-galactosyl-binding lectin in2 complex with globotriose
98d1bxni_
not modelled 6.5 42
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
99c4le5A_
not modelled 6.5 6
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: structure of an unusual s-adenosylmethionine synthetase from2 campylobacter jejuni

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Transmembrane helix prediction 

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