Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2082_(-)_2338717_2340882
DateMon Aug 5 13:25:19 BST 2019
Unique Job IDddf270afe011ab9f
SequenceVAGDLPPGRW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.220 Y:49.654 Z:60.943
Model (left) based on template c5imuA_
Top template information
PDB header:signaling protein
Chain: A: PDB Molecule:tat (twin-arginine translocation) pathway signal sequence
PDBTitle: a fragment of conserved hypothetical protein rv3899c (residues 184-2 410) from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 30%
215 residues ( 30% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
364 residues ( 50%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 74% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5imuA_
100.0 63
PDB header:signaling protein
Chain: A: PDB Molecule:tat (twin-arginine translocation) pathway signal sequence
PDBTitle: a fragment of conserved hypothetical protein rv3899c (residues 184-2 410) from mycobacterium tuberculosis
2c3ojaB_
94.3 10
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
3c1ei3E_
92.9 4
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
4c1ei3C_
91.9 8
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
5c1deqO_
91.8 7
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
6c1deqF_
89.4 6
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
7c3ghgI_
89.1 9
PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
8c6o7xa_
89.1 4
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
9c5tbyA_
88.6 10
PDB header:contractile protein
Chain: A: PDB Molecule:myosin-7;
PDBTitle: human beta cardiac heavy meromyosin interacting-heads motif obtained2 by homology modeling (using swiss-model) of human sequence from3 aphonopelma homology model (pdb-3jbh), rigidly fitted to human beta-4 cardiac negatively stained thick filament 3d-reconstruction (emd-5 2240)
10c3dtpA_
88.5 10
PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and cardiac muscle;
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to tarantula2 muscle thick filament cryo-em 3d-map
11c3ghgK_
86.6 5
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
12c6flnE_
85.9 8
PDB header:protein binding
Chain: E: PDB Molecule:e3 ubiquitin/isg15 ligase trim25;
PDBTitle: crystal structure of the human trim25 coiled-coil and pryspry domains
13c5yz0C_
85.1 11
PDB header:cell cycle
Chain: C: PDB Molecule:atr-interacting protein;
PDBTitle: cryo-em structure of human atr-atrip complex
14c6o7ua_
82.8 5
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
15c2dfsA_
81.7 7
PDB header:contractile protein/transport protein
Chain: A: PDB Molecule:myosin-5a;
PDBTitle: 3-d structure of myosin-v inhibited state
16c3lssA_
77.9 11
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp
17c1y4cA_
74.9 11
PDB header:de novo protein
Chain: A: PDB Molecule:maltose binding protein fused with designed
PDBTitle: designed helical protein fusion mbp
18c5ew5C_
74.0 5
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
19c1bf5A_
71.2 7
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
20c4cgkA_
70.4 8
PDB header:cell cycle
Chain: A: PDB Molecule:secreted 45 kda protein;
PDBTitle: crystal structure of the essential protein pcsb from streptococcus2 pneumoniae
21c6b3rE_
not modelled 68.1 9
PDB header:transport protein
Chain: E: PDB Molecule:piezo-type mechanosensitive ion channel component 1;
PDBTitle: structure of the mechanosensitive channel piezo1
22c4cg4D_
not modelled 66.5 9
PDB header:actin-binding protein
Chain: D: PDB Molecule:pyrin;
PDBTitle: crystal structure of the chs-b30.2 domains of trim20
23c5gasN_
not modelled 66.1 9
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
24c6iu3A_
not modelled 65.1 9
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
25c4rh7A_
not modelled 63.9 9
PDB header:motor protein
Chain: A: PDB Molecule:green fluorescent protein/cytoplasmic dynein 2 heavy chain
PDBTitle: crystal structure of human cytoplasmic dynein 2 motor domain in2 complex with adp.vi
26c3ojaA_
not modelled 63.0 6
PDB header:protein binding
Chain: A: PDB Molecule:leucine-rich immune molecule 1;
PDBTitle: crystal structure of lrim1/apl1c complex
27c3cwgA_
not modelled 61.1 10
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
28c3jbhA_
not modelled 60.5 4
PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain striated muscle;
PDBTitle: two heavy meromyosin interacting-heads motifs flexible docked into2 tarantula thick filament 3d-map allows in depth study of intra- and3 intermolecular interactions
29c4ll8E_
not modelled 58.1 8
PDB header:motor protein/transport protein
Chain: E: PDB Molecule:swi5-dependent ho expression protein 3;
PDBTitle: complex of carboxy terminal domain of myo4p and she3p middle fragment
30c3vkhA_
not modelled 57.1 9
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
31c2zv4O_
not modelled 57.0 15
PDB header:structural protein
Chain: O: PDB Molecule:major vault protein;
PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution
32d2jf2a1
not modelled 52.9 20
Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:UDP N-acetylglucosamine acyltransferase
33c6gapB_
not modelled 52.0 9
PDB header:viral protein
Chain: B: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t3d reovirus sigma1 coiled coil tail and body
34c3ipkA_
not modelled 50.3 4
PDB header:cell adhesion
Chain: A: PDB Molecule:agi/ii;
PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans
35c1m1jA_
not modelled 50.3 7
PDB header:blood clotting
Chain: A: PDB Molecule:fibrinogen alpha subunit;
PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands
36c6gajA_
not modelled 49.5 10
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
37c6gaoC_
not modelled 45.9 9
PDB header:viral protein
Chain: C: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail and body
38c5dfzD_
not modelled 44.4 11
PDB header:transferase
Chain: D: PDB Molecule:vacuolar protein sorting-associated protein 30;
PDBTitle: structure of vps34 complex ii from s. cerevisiae.
39c4pd3B_
not modelled 43.3 10
PDB header:contractile protein
Chain: B: PDB Molecule:nonmuscle myosin heavy chain b, alpha-actinin a chimera
PDBTitle: crystal structure of rigor-like human nonmuscle myosin-2b
40c1jchC_
not modelled 40.2 7
PDB header:ribosome inhibitor, hydrolase
Chain: C: PDB Molecule:colicin e3;
PDBTitle: crystal structure of colicin e3 in complex with its immunity protein
41c5mg8B_
not modelled 39.3 8
PDB header:recombination
Chain: B: PDB Molecule:structural maintenance of chromosomes protein 6;
PDBTitle: crystal structure of the s.pombe smc5/6 hinge domain
42c1d7mA_
not modelled 39.3 13
PDB header:contractile protein
Chain: A: PDB Molecule:cortexillin i;
PDBTitle: coiled-coil dimerization domain from cortexillin i
43c3vkgB_
not modelled 39.1 11
PDB header:motor protein
Chain: B: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of an mtbd truncation mutant of dynein motor domain
44c1i84V_
not modelled 38.5 6
PDB header:contractile protein
Chain: V: PDB Molecule:smooth muscle myosin heavy chain;
PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment.
45c1kmiZ_
not modelled 37.6 8
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
46c5voxb_
not modelled 36.5 4
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit b;
PDBTitle: yeast v-atpase in complex with legionella pneumophila effector sidk2 (rotational state 1)
47c2i1kA_
not modelled 36.4 9
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:moesin;
PDBTitle: moesin from spodoptera frugiperda reveals the coiled-coil domain at2 3.0 angstrom resolution
48c5nf8A_
not modelled 36.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:respiratory supercomplex factor 1, mitochondrial;
PDBTitle: solution structure of detergent-solubilized rcf1, a yeast2 mitochondrial inner membrane protein involved in respiratory complex3 iii/iv supercomplex formation
49c6ogdB_
not modelled 34.2 8
PDB header:toxin
Chain: B: PDB Molecule:toxin subunit yena2;
PDBTitle: cryo-em structure of yentca in its prepore state
50c5jxfA_
not modelled 32.6 5
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of flavobacterium psychrophilum dpp11 in complex2 with dipeptide arg-asp
51c2xzrA_
not modelled 32.6 9
PDB header:cell adhesion
Chain: A: PDB Molecule:immunoglobulin-binding protein eibd;
PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors
52c3qo8A_
not modelled 32.5 7
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic;
PDBTitle: crystal structure of seryl-trna synthetase from candida albicans
53c2ncaA_
not modelled 29.8 10
PDB header:chaperone
Chain: A: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: structural model for the n-terminal domain of human cdc37
54c2gl2B_
not modelled 29.3 13
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
55c6cfzC_
not modelled 27.3 21
PDB header:nuclear protein
Chain: C: PDB Molecule:dad2;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
56c3vkgA_
not modelled 26.3 12
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of an mtbd truncation mutant of dynein motor domain
57c6ezvX_
not modelled 26.1 11
PDB header:toxin
Chain: X: PDB Molecule:non-hemolytic enterotoxin lytic component l1;
PDBTitle: the cytotoxin maka from vibrio cholerae
58c2qzvB_
not modelled 25.4 13
PDB header:structural protein
Chain: B: PDB Molecule:major vault protein;
PDBTitle: draft crystal structure of the vault shell at 9 angstroms2 resolution
59c3lvgD_
not modelled 25.4 7
PDB header:structural protein
Chain: D: PDB Molecule:clathrin light chain b;
PDBTitle: crystal structure of a clathrin heavy chain and clathrin light chain2 complex
60c5tvbB_
not modelled 24.6 13
PDB header:transferase
Chain: B: PDB Molecule:nucleoprotein tpr;
PDBTitle: structure of the tpr oligomerization domain
61c1wleB_
not modelled 24.4 16
PDB header:ligase
Chain: B: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate
62c3u59C_
not modelled 24.0 11
PDB header:contractile protein
Chain: C: PDB Molecule:tropomyosin beta chain;
PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta
63c3vkhB_
not modelled 23.6 11
PDB header:motor protein
Chain: B: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
64c5jxpA_
not modelled 23.0 10
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of porphyromonas endodontalis dpp11 in alternate2 conformation
65c6nr84_
not modelled 23.0 21
PDB header:chaperone
Chain: 4: PDB Molecule:prefoldin subunit 4;
PDBTitle: htric-hpfd class6
66c5bu8A_
not modelled 22.2 13
PDB header:viral protein
Chain: A: PDB Molecule:dna stabilization protein;
PDBTitle: hk620 tail needle crystallized at ph 7.5 and derivatized with xenon
67c6bwfB_
not modelled 22.1 10
PDB header:membrane protein
Chain: B: PDB Molecule:trpm7;
PDBTitle: 4.1 angstrom mg2+-unbound structure of mouse trpm7
68c6bwfA_
not modelled 22.1 10
PDB header:membrane protein
Chain: A: PDB Molecule:trpm7;
PDBTitle: 4.1 angstrom mg2+-unbound structure of mouse trpm7
69c6bwfD_
not modelled 22.1 10
PDB header:membrane protein
Chain: D: PDB Molecule:trpm7;
PDBTitle: 4.1 angstrom mg2+-unbound structure of mouse trpm7
70c6bwfC_
not modelled 22.1 10
PDB header:membrane protein
Chain: C: PDB Molecule:trpm7;
PDBTitle: 4.1 angstrom mg2+-unbound structure of mouse trpm7
71c5mqfK_
not modelled 21.1 11
PDB header:splicing
Chain: K: PDB Molecule:pre-mrna-splicing factor spf27;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
72c3iv1F_
not modelled 20.9 8
PDB header:hydrolase
Chain: F: PDB Molecule:tumor susceptibility gene 101 protein;
PDBTitle: coiled-coil domain of tumor susceptibility gene 101
73c3rx6A_
not modelled 20.3 17
PDB header:transcription regulator
Chain: A: PDB Molecule:polarity suppression protein;
PDBTitle: crystal structure of polarity suppression protein from enterobacteria2 phage p4
74c2ycuA_
not modelled 20.2 13
PDB header:motor protein
Chain: A: PDB Molecule:non muscle myosin 2c, alpha-actinin;
PDBTitle: crystal structure of human non muscle myosin 2c in pre-power stroke2 state
75c2y3aB_
not modelled 20.2 9
PDB header:transferase
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit beta;
PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and the2 drug gdc-0941
76c4xa1D_
not modelled 20.0 9
PDB header:motor protein
Chain: D: PDB Molecule:gp7-myh7(1173-1238)-eb1 chimera protein;
PDBTitle: crystal structure of the coiled-coil surrounding skip 1 of myh7
77c4v1av_
not modelled 19.1 20
PDB header:ribosome
Chain: V: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
78c5vgzC_
not modelled 18.5 16
PDB header:hydrolase
Chain: C: PDB Molecule:26s proteasome regulatory subunit 8;
PDBTitle: conformational landscape of the p28-bound human proteasome regulatory2 particle
79c3j99M_
not modelled 18.5 14
PDB header:hydrolase
Chain: M: PDB Molecule:synaptosomal-associated protein 25;
PDBTitle: structure of 20s supercomplex determined by single particle2 cryoelectron microscopy (state iiib)
80c3ghgD_
not modelled 18.5 8
PDB header:blood clotting
Chain: D: PDB Molecule:fibrinogen alpha chain;
PDBTitle: crystal structure of human fibrinogen
81c1a92B_
not modelled 18.1 14
PDB header:leucine zipper
Chain: B: PDB Molecule:delta antigen;
PDBTitle: oligomerization domain of hepatitis delta antigen
82c1vw2H_
not modelled 18.1 11
PDB header:toxin
Chain: H: PDB Molecule:tcda1;
PDBTitle: crystal structure of tcda1
83c5jxxC_
not modelled 18.1 10
PDB header:transferase
Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: crystal structure of udp-n-acetylglucosamine o-acyltransferase (lpxa)2 from moraxella catarrhalis rh4.
84c6bwdA_
not modelled 17.3 18
PDB header:membrane protein
Chain: A: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: 3.7 angstrom cryoem structure of truncated mouse trpm7
85c6bwdD_
not modelled 17.3 18
PDB header:membrane protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: 3.7 angstrom cryoem structure of truncated mouse trpm7
86c6bwdC_
not modelled 17.3 18
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: 3.7 angstrom cryoem structure of truncated mouse trpm7
87c6bwdB_
not modelled 17.3 18
PDB header:membrane protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: 3.7 angstrom cryoem structure of truncated mouse trpm7
88c2v71A_
not modelled 17.1 11
PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear distribution protein nude-like 1;
PDBTitle: coiled-coil region of nudel
89c2pohA_
not modelled 16.7 14
PDB header:viral protein
Chain: A: PDB Molecule:head completion protein;
PDBTitle: structure of phage p22 tail needle gp26
90c3ni0A_
not modelled 16.6 13
PDB header:immune system
Chain: A: PDB Molecule:bone marrow stromal antigen 2;
PDBTitle: crystal structure of mouse bst-2/tetherin ectodomain
91c5cwsE_
not modelled 16.6 10
PDB header:protein transport
Chain: E: PDB Molecule:nucleoporin nup57;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
92c6mi3A_
not modelled 16.5 6
PDB header:transcription
Chain: A: PDB Molecule:nf-kb essential modulator,nf-kappa-b essential modulator,
PDBTitle: structure of nemo(51-112) with n- and c-terminal coiled-coil adaptors.
93d1pd3a_
not modelled 16.5 14
Fold:ROP-like
Superfamily:Nonstructural protein ns2, Nep, M1-binding domain
Family:Nonstructural protein ns2, Nep, M1-binding domain
94c5xyiG_
not modelled 15.0 20
PDB header:ribosome
Chain: G: PDB Molecule:40s ribosomal protein s6;
PDBTitle: small subunit of trichomonas vaginalis ribosome
95c4nqjB_
not modelled 14.8 8
PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase trim69;
PDBTitle: structure of coiled-coil domain
96c5td8B_
not modelled 14.7 15
PDB header:replication
Chain: B: PDB Molecule:kinetochore protein nuf2;
PDBTitle: crystal structure of an extended dwarf ndc80 complex
97c3tweA_
not modelled 14.5 28
PDB header:unknown function
Chain: A: PDB Molecule:alpha4h;
PDBTitle: crystal structure of the de novo designed peptide alpha4h
98c5y06A_
not modelled 14.5 15
PDB header:unknown function
Chain: A: PDB Molecule:msmeg_4306;
PDBTitle: structural characterization of msmeg_4306 from mycobacterium smegmatis
99c1ytzI_
not modelled 14.4 17
PDB header:contractile protein
Chain: I: PDB Molecule:troponin i;
PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 activated state

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