Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2094c_(tatA)_2353054_2353305
DateMon Aug 5 13:25:21 BST 2019
Unique Job ID65ac4ee844921925
SequenceVGSLSPWHWA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.258 Y:56.520 Z:43.632
Model (left) based on template c2mi2A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatb;
PDBTitle: solution structure of the e. coli tatb protein in dpc micelles
Confidence and coverage
Confidence: 99.8% Coverage: 78%
65 residues ( 78% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
Warning: 53% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2mi2A_
99.8 17
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatb;
PDBTitle: solution structure of the e. coli tatb protein in dpc micelles
2c2l16A_
99.8 25
PDB header:protein transport
Chain: A: PDB Molecule:sec-independent protein translocase protein tatad;
PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles
3c2lzsE_
99.7 38
PDB header:protein transport
Chain: E: PDB Molecule:sec-independent protein translocase protein tata;
PDBTitle: tata oligomer
4c4pj0l_
22.1 8
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
5c4pj0L_
22.1 8
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
6c3a0hi_
22.0 23
PDB header:electron transport
Chain: I: PDB Molecule:photosystem ii reaction center protein i;
PDBTitle: crystal structure of i-substituted photosystem ii complex
7d2axti1
22.0 23
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein I, PsbI
Family:PsbI-like
8c6dlmA_
22.0 35
PDB header:de novo protein
Chain: A: PDB Molecule:dhd127_a;
PDBTitle: dhd127
9c4il6l_
21.7 8
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
10c1s5ll_
21.7 8
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
11c3bz1L_
21.7 8
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 1 of 2). this2 file contains first monomer of psii dimer
12c4il6L_
21.7 8
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
13c3arcL_
21.7 8
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
14d2axtl1
21.7 8
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein L, PsbL
Family:PsbL-like
15c3kziL_
21.7 8
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
16c5e7cL_
21.7 8
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
17c5e7cl_
21.7 8
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
18c3a0hL_
21.7 8
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
19c4ub8L_
21.7 8
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
20c4tnjL_
21.7 8
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
21c3prqL_
not modelled 21.7 8
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
22c4ixqL_
not modelled 21.7 8
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
23c4tnjl_
not modelled 21.7 8
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
24c3prrL_
not modelled 21.7 8
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
25c2axtl_
not modelled 21.7 8
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
26c3wu2l_
not modelled 21.7 8
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
27c4ixrL_
not modelled 21.7 8
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
28c1s5lL_
not modelled 21.7 8
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
29c3a0bL_
not modelled 21.7 8
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
30c3wu2L_
not modelled 21.7 8
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
31c4ixql_
not modelled 21.7 8
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
32c4rvyL_
not modelled 21.7 8
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
33c3bz2L_
not modelled 21.7 8
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 2 of 2). this2 file contains second monomer of psii dimer
34c4ixrl_
not modelled 21.7 8
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
35c4rvyl_
not modelled 21.7 8
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
36c4fbyd_
not modelled 21.7 8
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem ii d2 protein;
PDBTitle: fs x-ray diffraction of photosystem ii
37c2axtL_
not modelled 21.7 8
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
38c4tnkL_
not modelled 21.7 8
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
39c3a0hl_
not modelled 21.7 8
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
40c4ub6l_
not modelled 21.7 8
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
41c4fbyL_
not modelled 21.7 8
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: fs x-ray diffraction of photosystem ii
42c4tnhL_
not modelled 21.7 8
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
43c4ub8l_
not modelled 21.7 8
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
44c4ub6L_
not modelled 21.7 8
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
45c4tnhl_
not modelled 21.7 8
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
46c4tnil_
not modelled 21.7 8
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
47c3a0bl_
not modelled 21.7 8
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
48c4tnkl_
not modelled 21.7 8
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
49c4tniL_
not modelled 21.7 8
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
50c3jcuI_
not modelled 21.5 23
PDB header:membrane protein
Chain: I: PDB Molecule:protein photosystem ii reaction center protein i;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
51c2o0cB_
not modelled 20.9 14
PDB header:signaling protein
Chain: B: PDB Molecule:alr2278 protein;
PDBTitle: crystal structure of the h-nox domain from nostoc sp. pcc 71202 complexed to no
52c3arcl_
not modelled 20.3 8
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
53c2kdcC_
not modelled 16.3 9
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: nmr solution structure of e. coli diacylglycerol kinase2 (dagk) in dpc micelles
54c3jcul_
not modelled 13.9 15
PDB header:membrane protein
Chain: L: PDB Molecule:protein photosystem ii reaction center protein l;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
55d2ffha2
not modelled 12.0 10
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
56c1by0A_
not modelled 11.9 37
PDB header:rna binding protein
Chain: A: PDB Molecule:protein (hepatitis delta antigen);
PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen
57d1hq1a_
not modelled 11.6 7
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
58c4ue4C_
not modelled 11.5 13
PDB header:translation
Chain: C: PDB Molecule:signal recognition particle protein;
PDBTitle: structural basis for targeting and elongation arrest of bacillus2 signal recognition particle
59d2cqqa1
not modelled 11.3 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
60c6fkip_
not modelled 10.7 16
PDB header:membrane protein
Chain: P: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
61d1dula_
not modelled 10.7 7
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
62c1a92B_
not modelled 10.2 30
PDB header:leucine zipper
Chain: B: PDB Molecule:delta antigen;
PDBTitle: oligomerization domain of hepatitis delta antigen
63d2f2ea1
not modelled 9.8 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
64c3a0hJ_
not modelled 9.7 21
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
65d2axtj1
not modelled 9.7 21
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
66d1m56d_
not modelled 9.0 24
Fold:Single transmembrane helix
Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV
Family:Bacterial aa3 type cytochrome c oxidase subunit IV
67c5ndaA_
not modelled 8.0 21
PDB header:protein
Chain: A: PDB Molecule:rsp-c33leu -recombinant pulmonary surfactant-associated
PDBTitle: nmr structural characterisation of pharmaceutically relevant proteins2 obtained through a novel recombinant production: the case of the3 pulmonary surfactant polypeptide c analogue rsp-c33leu.
68c5hs9A_
not modelled 7.3 13
PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator yodb;
PDBTitle: crystal structure of the quinone-bound yodb from b. subtilis
69c5xnmj_
not modelled 7.0 8
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
70c5ireD_
not modelled 6.5 25
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: the cryo-em structure of zika virus
71d1qzxa2
not modelled 6.5 10
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
72d1qb2a_
not modelled 6.4 14
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
73c3jcuj_
not modelled 6.3 21
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
74c5wdaL_
not modelled 6.2 21
PDB header:protein transport
Chain: L: PDB Molecule:general secretion pathway protein g;
PDBTitle: structure of the pulg pseudopilus
75c2jqeA_
not modelled 6.2 13
PDB header:signaling protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: soution structure of af54 m-domain
76c5hk1A_
not modelled 5.6 28
PDB header:membrane protein
Chain: A: PDB Molecule:sigma non-opioid intracellular receptor 1;
PDBTitle: human sigma-1 receptor bound to pd144418
77c6c4zD_
not modelled 5.5 38
PDB header:de novo protein
Chain: D: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
78c6c4yJ_
not modelled 5.5 38
PDB header:de novo protein
Chain: J: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
79c6c4zA_
not modelled 5.5 38
PDB header:de novo protein
Chain: A: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
80c6c4yM_
not modelled 5.5 38
PDB header:de novo protein
Chain: M: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
81c6c4zB_
not modelled 5.5 38
PDB header:de novo protein
Chain: B: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
82c6c4yB_
not modelled 5.5 38
PDB header:de novo protein
Chain: B: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
83c6c4yQ_
not modelled 5.5 38
PDB header:de novo protein
Chain: Q: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
84c6c4zQ_
not modelled 5.5 38
PDB header:de novo protein
Chain: Q: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
85c6c4zL_
not modelled 5.5 38
PDB header:de novo protein
Chain: L: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
86c6c4yD_
not modelled 5.5 38
PDB header:de novo protein
Chain: D: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
87c6c4zG_
not modelled 5.5 38
PDB header:de novo protein
Chain: G: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
88c6c4zC_
not modelled 5.5 38
PDB header:de novo protein
Chain: C: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
89c6c4yN_
not modelled 5.5 38
PDB header:de novo protein
Chain: N: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
90c6c4yR_
not modelled 5.5 38
PDB header:de novo protein
Chain: R: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
91c6c4yE_
not modelled 5.5 38
PDB header:de novo protein
Chain: E: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
92c6c4yH_
not modelled 5.5 38
PDB header:de novo protein
Chain: H: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
93c6c4yI_
not modelled 5.5 38
PDB header:de novo protein
Chain: I: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
94c6c4zI_
not modelled 5.5 38
PDB header:de novo protein
Chain: I: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
95c6c4yO_
not modelled 5.5 38
PDB header:de novo protein
Chain: O: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
96c6c4yF_
not modelled 5.5 38
PDB header:de novo protein
Chain: F: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
97c6c4zP_
not modelled 5.5 38
PDB header:de novo protein
Chain: P: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
98c6c4yL_
not modelled 5.5 38
PDB header:de novo protein
Chain: L: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
99c6c4zK_
not modelled 5.5 38
PDB header:de novo protein
Chain: K: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below