Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2097c_(-)_2355327_2356685
DateMon Aug 5 13:25:21 BST 2019
Unique Job ID56eaa2e08237047e
SequenceVQRRIMGIET ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:78.948 Y:72.516 Z:80.421
Model (left) based on template c4b0tB_
Top template information
PDB header:ligase
Chain: B: PDB Molecule:pup--protein ligase;
PDBTitle: structure of the pup ligase pafa of the prokaryotic2 ubiquitin-like modification pathway in complex with adp
Confidence and coverage
Confidence:100.0% Coverage: 99%
447 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4b0tB_



100.0 55
PDB header:ligase
Chain: B: PDB Molecule:pup--protein ligase;
PDBTitle: structure of the pup ligase pafa of the prokaryotic2 ubiquitin-like modification pathway in complex with adp
2c4bjrA_



100.0 54
PDB header:ligase
Chain: A: PDB Molecule:pup--protein ligase, prokaryotic ubiquitin-like protein
PDBTitle: crystal structure of the complex between prokaryotic2 ubiquitin-like protein pup and its ligase pafa
3c4b0sA_



100.0 41
PDB header:hydrolase
Chain: A: PDB Molecule:deamidase-depupylase dop;
PDBTitle: structure of the deamidase-depupylase dop of the prokaryotic2 ubiquitin-like modification pathway in complex with atp
4d1r8ga_



96.8 12
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamate-cysteine ligase family 2 (GCS2)
5d1tt4a_



95.7 11
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamate-cysteine ligase family 2 (GCS2)
6c1tt4B_



95.7 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative cytoplasmic protein;
PDBTitle: structure of np459575, a predicted glutathione synthase from2 salmonella typhimurium
7c2gwcE_



89.7 13
PDB header:ligase
Chain: E: PDB Molecule:glutamate cysteine ligase;
PDBTitle: crystal structure of plant glutamate cysteine ligase in complex with a2 transition state analogue
8c5cywB_



50.9 36
PDB header:viral protein
Chain: B: PDB Molecule:interferon antagonist c7;
PDBTitle: crystal structure of vaccinia virus c7
9d1ghha_



49.2 17
Fold:DNA damage-inducible protein DinI
Superfamily:DNA damage-inducible protein DinI
Family:DNA damage-inducible protein DinI
10c5cz3B_



49.2 43
PDB header:viral protein
Chain: B: PDB Molecule:m64r;
PDBTitle: crystal structure of myxoma virus m64
11d2jg0a1



40.2 19
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Trehalase-like
12c2jg0A_



40.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:periplasmic trehalase;
PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin
13c2kseA_



25.1 17
PDB header:transferase
Chain: A: PDB Molecule:sensor protein qsec;
PDBTitle: backbone structure of the membrane domain of e. coli histidine kinase2 receptor qsec, center for structures of membrane proteins (csmp)3 target 4311c
14c3ff6D_



21.1 24
PDB header:ligase
Chain: D: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: human acc2 ct domain with cp-640186
15c5m4aA_



20.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:neutral trehalase;
PDBTitle: neutral trehalase nth1 from saccharomyces cerevisiae in complex with2 trehalose
16c3cvjB_



17.3 25
PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution
17c2x24B_



16.2 27
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: bovine acc2 ct domain in complex with inhibitor
18c3tadB_



15.5 23
PDB header:protein binding
Chain: B: PDB Molecule:liprin-alpha-2;
PDBTitle: crystal structure of the liprin-alpha/liprin-beta complex
19c4emtB_



14.5 42
PDB header:membrane protein
Chain: B: PDB Molecule:transmembrane protein 173;
PDBTitle: crystal structure of human sting bound to c-di-gmp
20c3o2iB_



14.3 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein from2 leptospirillum sp. group ii uba
21d1m65a_



not modelled 13.6 16
Fold:7-stranded beta/alpha barrel
Superfamily:PHP domain-like
Family:PHP domain
22c5gs5D_



not modelled 13.4 37
PDB header:immune system
Chain: D: PDB Molecule:stimulator of interferon genes protein;
PDBTitle: crystal structure of apo rat sting
23d1uyra2



not modelled 13.4 22
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
24c4wa0A_



not modelled 13.3 42
PDB header:cell adhesion
Chain: A: PDB Molecule:possible adhesin;
PDBTitle: the structure of a possible adhesin c-terminal domain from2 caldicellulosiruptor kronotskyensis
25d2gc6a1



not modelled 12.7 21
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:Folylpolyglutamate synthetase, C-terminal domain
26c4ef4B_



not modelled 12.5 42
PDB header:immune system
Chain: B: PDB Molecule:transmembrane protein 173;
PDBTitle: crystal structure of sting ctd complex with c-di-gmp
27d2jn4a1



not modelled 12.5 50
Fold:NifT/FixU barrel-like
Superfamily:NifT/FixU-like
Family:NifT/FixU
28c2jn4A_



not modelled 12.5 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein fixu, nift;
PDBTitle: solution nmr structure of protein rp4601 from rhodopseudomonas2 palustris. northeast structural genomics consortium target rpt2;3 ontario center for structural proteomics target rp4601.
29c2lt5A_



not modelled 12.5 29
PDB header:hydrolase
Chain: A: PDB Molecule:protein p-30;
PDBTitle: zymogen-flg of the onconase
30c5cqqB_



not modelled 12.1 20
PDB header:transcription/dna
Chain: B: PDB Molecule:regulatory protein zeste;
PDBTitle: crystal structure of the drosophila zeste dna binding domain in2 complex with dna
31c6mtgB_



not modelled 11.6 31
PDB header:transferase
Chain: B: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: a single reactive noncanonical amino acid is able to dramatically2 stabilize protein structure
32c2h2wA_



not modelled 11.3 31
PDB header:transferase
Chain: A: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution
33d2ghra1



not modelled 11.1 31
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:HTS-like
34d1dy2a_



not modelled 11.0 25
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Endostatin
35d1u7za_



not modelled 10.8 21
Fold:Ribokinase-like
Superfamily:CoaB-like
Family:CoaB-like
36c5e2hB_



not modelled 10.7 35
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of d-alanine carboxypeptidase ampc from2 mycobacterium smegmatis
37c5yisC_



not modelled 10.3 47
PDB header:protein binding
Chain: C: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of ankb lir/lc3b complex
38c4k7cA_



not modelled 10.2 18
PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase c;
PDBTitle: crystal structure of pepw from lactobacillus rhamnosis hn001 (dr20)2 determined as the selenomet derivative
39c3btpB_



not modelled 10.1 64
PDB header:dna binding protein, chaperone
Chain: B: PDB Molecule:protein vire1;
PDBTitle: crystal structure of agrobacterium tumefaciens vire2 in complex with2 its chaperone vire1: a novel fold and implications for dna binding
40c3h0jA_



not modelled 9.5 22
PDB header:transferase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of the carboxyltransferase domain of2 acetyl-coenzyme a carboxylase in complex with compound 2
41d1pixa3



not modelled 9.4 20
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
42c5oomv_



not modelled 9.2 17
PDB header:ribosome
Chain: V: PDB Molecule:39s ribosomal protein l24, mitochondrial;
PDBTitle: structure of a native assembly intermediate of the human mitochondrial2 ribosome with unfolded interfacial rrna
43c5gmxA_



not modelled 9.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:carboxylesterase;
PDBTitle: crystal structure of a family viii carboxylesterase
44d1wo8a1



not modelled 9.0 25
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Methylglyoxal synthase, MgsA
45c2pc9B_



not modelled 9.0 20
PDB header:lyase
Chain: B: PDB Molecule:phosphoenolpyruvate carboxykinase [atp];
PDBTitle: crystal structure of atp-dependent phosphoenolpyruvate carboxykinase2 from thermus thermophilus hb8
46d2h9fa1



not modelled 8.9 14
Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:PA0793-like
47c4zqaA_



not modelled 8.8 33
PDB header:transcription repressor
Chain: A: PDB Molecule:sin3 histone deacetylase corepressor complex component
PDBTitle: crystal structure of the sds3 dimerization domain
48d1g5ma_



not modelled 8.8 20
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
49d2hmva1



not modelled 8.6 18
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
50d1o5za1



not modelled 8.5 40
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:Folylpolyglutamate synthetase, C-terminal domain
51c3ja7L_



not modelled 8.5 20
PDB header:viral protein
Chain: L: PDB Molecule:portal protein gp20;
PDBTitle: cryo-em structure of the bacteriophage t4 portal protein assembly at2 near-atomic resolution
52d1cpqa_



not modelled 8.0 50
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
53d1e85a_



not modelled 7.9 50
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
54c5tgfB_



not modelled 7.9 27
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of putative beta-lactamase from bacteroides dorei2 dsm 17855
55c2g5iB_



not modelled 7.8 38
PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase
PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4
56d1x4ka2



not modelled 7.8 40
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
57c3fy6A_



not modelled 7.7 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:integron cassette protein;
PDBTitle: structure from the mobile metagenome of v. cholerae. integron cassette2 protein vch_cass3
58c3kfuF_



not modelled 7.6 38
PDB header:ligase/rna
Chain: F: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the transamidosome
59c5yirG_



not modelled 7.5 39
PDB header:protein binding
Chain: G: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of ankb lir/gabarap complex
60d1s05a_



not modelled 7.5 67
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
61c5yirH_



not modelled 7.4 47
PDB header:protein binding
Chain: H: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of ankb lir/gabarap complex
62d2f2ab2



not modelled 7.3 38
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:GatB/GatE catalytic domain-like
63c5b3iB_



not modelled 7.3 50
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c prime;
PDBTitle: homo-dimeric structure of cytochrome c' from thermophilic2 hydrogenophilus thermoluteolus
64c3ip4B_



not modelled 7.3 38
PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: the high resolution structure of gatcab
65c3o3vB_



not modelled 7.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of clbp peptidase domain
66c4wyoB_



not modelled 7.0 19
PDB header:ligase/ligase inhibitor
Chain: B: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of human-yeast chimera acetyl coa carboxylase ct2 domain bound to compound 1
67d1j3ba2



not modelled 7.0 20
Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
68d2j8wa1



not modelled 7.0 50
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
69c5evlA_



not modelled 7.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase/d-alanine carboxypeptidase from2 chromobacterium violaceum
70c1w8xM_



not modelled 7.0 45
PDB header:virus
Chain: M: PDB Molecule:protein p30;
PDBTitle: structural analysis of prd1
71d2ccya_



not modelled 6.9 50
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
72d1g7oa1



not modelled 6.9 13
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
73c2ebyA_



not modelled 6.9 2
PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
74c5m86C_



not modelled 6.8 28
PDB header:unknown function
Chain: C: PDB Molecule:ta1207;
PDBTitle: crystal structure of the thermoplasma acidophilum protein ta1207
75c6njkA_



not modelled 6.8 31
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase from sulfitobacter sp. ee-36
76c5n6nC_



not modelled 6.7 31
PDB header:signaling protein
Chain: C: PDB Molecule:neutral trehalase;
PDBTitle: crystal structure of the 14-3-3:neutral trehalase nth1 complex
77c3h0mE_



not modelled 6.7 38
PDB header:ligase
Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
78c2qz6A_



not modelled 6.7 29
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: first crystal structure of a psychrophile class c beta-2 lactamase
79c4n0iB_



not modelled 6.6 38
PDB header:ligase
Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit b,
PDBTitle: crystal structure of s. cerevisiae mitochondrial gatfab in complex2 with glutamine
80c5x90A_



not modelled 6.6 35
PDB header:protein transport
Chain: A: PDB Molecule:icms;
PDBTitle: structure of dotl(656-783)-icms-icmw-lvga derived from legionella2 pneumophila
81c4wj3K_



not modelled 6.6 38
PDB header:ligase/rna
Chain: K: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
82c4wj3E_



not modelled 6.6 38
PDB header:ligase/rna
Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
83c4wj3H_



not modelled 6.6 38
PDB header:ligase/rna
Chain: H: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
84c4wj3B_



not modelled 6.6 38
PDB header:ligase/rna
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
85c3kfuI_



not modelled 6.6 38
PDB header:ligase/rna
Chain: I: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the transamidosome
86c4gudA_



not modelled 6.6 36
PDB header:transferase
Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit hish;
PDBTitle: crystal structure of amidotransferase hish from vibrio cholerae
87c5lcwS_



not modelled 6.5 14
PDB header:cell cycle
Chain: S: PDB Molecule:mitotic checkpoint serine/threonine-protein kinase bub1
PDBTitle: cryo-em structure of the anaphase-promoting complex/cyclosome, in2 complex with the mitotic checkpoint complex (apc/c-mcc) at 4.23 angstrom resolution
88c3zeyT_



not modelled 6.5 17
PDB header:ribosome
Chain: T: PDB Molecule:40s ribosomal protein s24;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
89d1mqva_



not modelled 6.5 33
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
90c3al0B_



not modelled 6.5 38
PDB header:ligase/rna
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
91c4ulvB_



not modelled 6.5 67
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c, class ii;
PDBTitle: cytochrome c prime from shewanella frigidimarina
92c3c85A_



not modelled 6.5 36
PDB header:transport protein
Chain: A: PDB Molecule:putative glutathione-regulated potassium-efflux system
PDBTitle: crystal structure of trka domain of putative glutathione-regulated2 potassium-efflux kefb from vibrio parahaemolyticus
93c3u5cY_



not modelled 6.3 17
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
94c4mupC_



not modelled 6.3 21
PDB header:hydrolase
Chain: C: PDB Molecule:amidohydrolase;
PDBTitle: crystal structure of agrobacterium tumefaciens atu3138 (efi target2 505157), apo structure
95d1gh6b2



not modelled 6.3 15
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Retinoblastoma tumor suppressor domains
96c3ij3A_



not modelled 6.3 11
PDB header:hydrolase
Chain: A: PDB Molecule:cytosol aminopeptidase;
PDBTitle: 1.8 angstrom resolution crystal structure of cytosol aminopeptidase2 from coxiella burnetii
97c5y88R_



not modelled 6.3 60
PDB header:splicing
Chain: R: PDB Molecule:protein cwc16;
PDBTitle: cryo-em structure of the intron-lariat spliceosome ready for2 disassembly from s.cerevisiae at 3.5 angstrom
98c1sghB_



not modelled 6.3 38
PDB header:structural protein
Chain: B: PDB Molecule:ezrin-radixin-moesin binding phosphoprotein 50;
PDBTitle: moesin ferm domain bound to ebp50 c-terminal peptide
99d2hdsa1



not modelled 6.2 27
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase

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