Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2108_(PPE36)_2367719_2368450
DateMon Aug 5 13:25:22 BST 2019
Unique Job IDc64a468eafe6288b
SequenceMPNFWALPPE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:60.574 Y:74.608 Z:76.356
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 71%
172 residues ( 71% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 43
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2c2g38B_
100.0 34
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38b1
100.0 34
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
4c4xy3A_
100.0 16
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4wj2A_
98.5 15
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
6c2vs0B_
97.9 16
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c3gvmA_
97.8 18
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
8c4iogD_
97.7 12
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
9c3zbhC_
97.6 23
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
10d1wa8a1
96.9 12
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c4lwsA_
96.5 19
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
12c4lwsB_
96.2 13
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
13d1wa8b1
96.0 17
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
14c4i0xA_
95.4 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
15c2kg7B_
91.4 13
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
16c4i0xJ_
75.3 19
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
17c3txaA_
44.7 57
PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structural analysis of adhesive tip pilin, gbs104 from group b2 streptococcus agalactiae
18d1zyea1
20.5 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
19d2f8aa1
19.8 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
20d1gp1a_
17.1 17
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
21c3drnB_
not modelled 16.9 38
PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxiredoxin, bacterioferritin comigratory protein
PDBTitle: the crystal structure of bcp1 from sulfolobus sulfataricus
22d1st9a_
not modelled 16.8 31
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
23d1jfma_
not modelled 16.6 14
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
24c1bkvA_
not modelled 16.4 50
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
25c1bkvC_
not modelled 15.4 50
PDB header:structural protein
Chain: C: PDB Molecule:t3-785;
PDBTitle: collagen
26c1bkvB_
not modelled 15.4 50
PDB header:structural protein
Chain: B: PDB Molecule:t3-785;
PDBTitle: collagen
27c2p5qA_
not modelled 15.2 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione peroxidase 5;
PDBTitle: crystal structure of the poplar glutathione peroxidase 5 in the2 reduced form
28c3tw0D_
not modelled 14.8 33
PDB header:cell adhesion
Chain: D: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structural analysis of adhesive tip pilin, gbs104 from group b2 streptococcus agalactiae
29c5enuB_
not modelled 13.8 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase/ thiol specific antioxidant/
PDBTitle: crystal structure of an alkyl hyroperoxide reductase from burkholderia2 ambifaria
30c2n5uA_
not modelled 13.4 21
PDB header:photosynthesis
Chain: A: PDB Molecule:tsr0524 protein;
PDBTitle: solution structure of the cyanobacterial cytochrome b6f complex2 subunit petp
31c3lorB_
not modelled 13.3 38
PDB header:isomerase
Chain: B: PDB Molecule:thiol-disulfide isomerase and thioredoxins;
PDBTitle: the crystal structure of a thiol-disulfide isomerase from2 corynebacterium glutamicum to 2.2a
32c2hyxA_
not modelled 12.1 33
PDB header:unknown function
Chain: A: PDB Molecule:protein dipz;
PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis
33c2v1mA_
not modelled 11.9 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione peroxidase;
PDBTitle: crystal structure of schistosoma mansoni glutathione peroxidase
34c4ka0C_
not modelled 11.5 29
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative thiol-disulfide oxidoreductase;
PDBTitle: crystal structure of a putative thiol-disulfide oxidoreductase from2 bacteroides vulgatus (target nysgrc-011676), space group p21221
35c2wpyA_
not modelled 11.4 50
PDB header:transcription
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4 leucine zipper mutant with one vxxnxxx motif2 coordinating chloride
36d1qxha_
not modelled 10.9 9
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
37c3pmdA_
not modelled 10.8 29
PDB header:lipid binding protein
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: crystal structure of the sporulation inhibitor pxo1-118 from bacillus2 anthracis
38c2yp6A_
not modelled 10.7 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin family protein;
PDBTitle: crystal structure of the pneumoccocal exposed lipoprotein2 thioredoxin sp_1000 (etrx2) from streptococcus pneumoniae3 strain tigr4 in complex with cyclofos 3 tm
39c3eytA_
not modelled 10.4 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein spoa0173;
PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173
40c2h66G_
not modelled 10.4 12
PDB header:structural genomics/oxidoreductase
Chain: G: PDB Molecule:pv-pf14_0368;
PDBTitle: the crystal structure of plasmodium vivax 2-cys2 peroxiredoxin
41c3mp6A_
not modelled 10.3 53
PDB header:histone binding protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein,linker,saga-associated
PDBTitle: complex structure of sgf29 and dimethylated h3k4
42c4g7xB_
not modelled 10.2 17
PDB header:protein binding/protein binding
Chain: B: PDB Molecule:tola protein;
PDBTitle: crystal structure of a complex between the ctxphi piii n-terminal2 domain and the vibrio cholerae tola c-terminal domain
43c2iu1A_
not modelled 10.2 14
PDB header:transcription
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of eif5 c-terminal domain
44c3ixrA_
not modelled 10.1 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein;
PDBTitle: crystal structure of xylella fastidiosa prxq c47s mutant
45c4je1A_
not modelled 9.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable thiol peroxidase;
PDBTitle: crystal structure of thiol peroxidase from burkholderia cenocepacia2 j2315
46d3e9va1
not modelled 9.6 27
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
47c4yk3B_
not modelled 9.4 20
PDB header:protein binding
Chain: B: PDB Molecule:bepe protein;
PDBTitle: crystal structure of the bid domain of bepe from bartonella henselae
48c4yk2B_
not modelled 9.1 14
PDB header:protein binding
Chain: B: PDB Molecule:bartonella effector protein (bep) substrate of virb t4ss;
PDBTitle: crystal structure of the bid domain of bep9 from bartonella2 clarridgeiae
49c2eqmA_
not modelled 9.1 25
PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens]
50c2l5oA_
not modelled 8.9 47
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin;
PDBTitle: solution structure of a putative thioredoxin from neisseria2 meningitidis
51d1knga_
not modelled 8.7 44
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
52d1e6yb1
not modelled 8.6 26
Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
53d1rqba1
not modelled 8.6 48
Fold:RuvA C-terminal domain-like
Superfamily:post-HMGL domain-like
Family:Conserved carboxylase domain
54d2bzba1
not modelled 8.6 35
Fold:ROP-like
Superfamily:BAS1536-like
Family:BAS1536-like
55c3rmrA_
not modelled 8.4 32
PDB header:protein binding
Chain: A: PDB Molecule:avirulence protein;
PDBTitle: crystal structure of hyaloperonospora arabidopsidis atr1 effector2 domain
56c2r37A_
not modelled 8.4 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione peroxidase 3;
PDBTitle: crystal structure of human glutathione peroxidase 3 (selenocysteine to2 glycine mutant)
57c2x5rA_
not modelled 8.3 37
PDB header:viral protein
Chain: A: PDB Molecule:hypothetical protein orf126;
PDBTitle: crystal structure of the hypothetical protein orf126 from pyrobaculum2 spherical virus
58c3gknA_
not modelled 8.3 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein;
PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures
59d1hbnb1
not modelled 8.3 38
Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
60c3cmiA_
not modelled 8.2 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:peroxiredoxin hyr1;
PDBTitle: crystal structure of glutathione-dependent phospholipid peroxidase2 hyr1 from the yeast saccharomyces cerevisiae
61c4luqD_
not modelled 8.1 100
PDB header:protein binding/toxin inhibitor
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of virulence effector tse3 in complex with2 neutralizer tsi3
62c4mm1E_
not modelled 8.1 24
PDB header:transferase
Chain: E: PDB Molecule:geranylgeranylglyceryl phosphate synthase;
PDBTitle: gggps from methanothermobacter thermautotrophicus
63c6mn5A_
not modelled 8.1 25
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:aminoglycoside n(3)-acetyltransferase, aac(3)-iva;
PDBTitle: crystal structure of aminoglycoside acetyltransferase aac(3)-iva,2 h154a mutant, in complex with gentamicin c1a
64c2fulE_
not modelled 8.0 28
PDB header:translation
Chain: E: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of the c-terminal domain of s. cerevisiae eif5
65d1zupa1
not modelled 7.8 33
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:TM1739-like
66c4gyxC_
not modelled 7.8 45
PDB header:structural protein, blood clotting
Chain: C: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
67c6a97A_
not modelled 7.8 19
PDB header:immune system
Chain: A: PDB Molecule:mhc i-like leukocyte 2 long form;
PDBTitle: crystal structure of mhc-like mill2
68c2lndA_
not modelled 7.8 44
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein, pfk fold;
PDBTitle: solution nmr structure of de novo designed protein, pfk fold,2 northeast structural genomics consortium target or134
69c3hfxA_
not modelled 7.8 23
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
70c2b1kA_
not modelled 7.8 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe;
PDBTitle: crystal structure of e. coli ccmg protein
71c5frgA_
not modelled 7.8 63
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
72c3hm6X_
not modelled 7.7 17
PDB header:signaling protein
Chain: X: PDB Molecule:plexin-b1;
PDBTitle: crystal structure of the cytoplasmic domain of human plexin b1
73d2b0ja2
not modelled 7.7 70
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
74c2wpzA_
not modelled 7.7 50
PDB header:transcription
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride
75c5j4fB_
not modelled 7.6 22
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminally his6-tagged hp0902, an2 uncharacterized protein from helicobacter pylori 26695
76c2y5tG_
not modelled 7.5 83
PDB header:immune system
Chain: G: PDB Molecule:c1;
PDBTitle: crystal structure of the pathogenic autoantibody ciic1 in complex with2 the triple-helical c1 peptide
77c6qm7V_
not modelled 7.5 14
PDB header:hydrolase
Chain: V: PDB Molecule:proteasome beta1 chain;
PDBTitle: leishmania tarentolae proteasome 20s subunit complexed with gsk3494245
78c4gyxB_
not modelled 7.5 45
PDB header:structural protein, blood clotting
Chain: B: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
79c4gyxA_
not modelled 7.5 45
PDB header:structural protein, blood clotting
Chain: A: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
80c5e6pA_
not modelled 7.4 24
PDB header:signaling protein
Chain: A: PDB Molecule:plexin-b2;
PDBTitle: plexinb2 cytoplasmic region/pdz-rhogef pdz domain complex
81c3dwvB_
not modelled 7.3 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione peroxidase-like protein;
PDBTitle: glutathione peroxidase-type tryparedoxin peroxidase, oxidized form
82d2b5xa1
not modelled 7.3 31
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
83d1ui5a2
not modelled 7.2 17
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
84c5v6rB_
not modelled 7.2 17
PDB header:protein binding
Chain: B: PDB Molecule:plexin-d1;
PDBTitle: structure of plexin d1 intracellular domain
85c2y5tE_
not modelled 7.2 83
PDB header:immune system
Chain: E: PDB Molecule:c1;
PDBTitle: crystal structure of the pathogenic autoantibody ciic1 in complex with2 the triple-helical c1 peptide
86c3lwaA_
not modelled 7.2 31
PDB header:isomerase
Chain: A: PDB Molecule:secreted thiol-disulfide isomerase;
PDBTitle: the crystal structure of a secreted thiol-disulfide isomerase from2 corynebacterium glutamicum to 1.75a
87c2wpzB_
not modelled 7.2 50
PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride
88c3ig3A_
not modelled 7.1 24
PDB header:signaling protein, membrane protein
Chain: A: PDB Molecule:plxna3 protein;
PDBTitle: crystal structure of mouse plexin a3 intracellular domain
89c2c0dA_
not modelled 7.1 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin peroxidase 2;
PDBTitle: structure of the mitochondrial 2-cys peroxiredoxin from2 plasmodium falciparum
90c4h5bB_
not modelled 7.1 34
PDB header:unknown function
Chain: B: PDB Molecule:dr_1245 protein;
PDBTitle: crystal structure of dr_1245 from deinococcus radiodurans
91c1de4A_
not modelled 7.1 16
PDB header:metal transport inhibitor/receptor
Chain: A: PDB Molecule:hemochromatosis protein;
PDBTitle: hemochromatosis protein hfe complexed with transferrin receptor
92c3ia1A_
not modelled 7.0 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:thio-disulfide isomerase/thioredoxin;
PDBTitle: crystal structure of thio-disulfide isomerase from thermus2 thermophilus
93c2wpzC_
not modelled 7.0 50
PDB header:transcription
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride
94d1jfua_
not modelled 7.0 22
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
95c3su8X_
not modelled 6.9 17
PDB header:apoptosis/signaling protein
Chain: X: PDB Molecule:plexin-b1;
PDBTitle: crystal structure of a truncated intracellular domain of plexin-b1 in2 complex with rac1
96c4dmtC_
not modelled 6.9 38
PDB header:structural protein
Chain: C: PDB Molecule:collagen iii derived peptide;
PDBTitle: crystal structure of a vwf binding collagen iii derived triple helical2 peptide
97c4dmtB_
not modelled 6.9 38
PDB header:structural protein
Chain: B: PDB Molecule:collagen iii derived peptide;
PDBTitle: crystal structure of a vwf binding collagen iii derived triple helical2 peptide
98c4dmtA_
not modelled 6.9 38
PDB header:structural protein
Chain: A: PDB Molecule:collagen iii derived peptide;
PDBTitle: crystal structure of a vwf binding collagen iii derived triple helical2 peptide
99d1we0a1
not modelled 6.7 17
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like

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