Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2111c_(-)_2370606_2370800
DateMon Aug 5 13:25:23 BST 2019
Unique Job ID0f65e3e8530472f9
SequenceMAQEQTKRGG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.547 Y:21.864 Z:24.954
Model (left) based on template c4bjrA_
Top template information
PDB header:ligase
Chain: A: PDB Molecule:pup--protein ligase, prokaryotic ubiquitin-like protein
PDBTitle: crystal structure of the complex between prokaryotic2 ubiquitin-like protein pup and its ligase pafa
Confidence and coverage
Confidence: 98.6% Coverage: 42%
27 residues ( 42% of your sequence) have been modelled with 98.6% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
44 residues ( 69%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 61% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4bjrA_
98.6 74
PDB header:ligase
Chain: A: PDB Molecule:pup--protein ligase, prokaryotic ubiquitin-like protein
PDBTitle: crystal structure of the complex between prokaryotic2 ubiquitin-like protein pup and its ligase pafa
2c3m91B_
98.5 100
PDB header:hydrolase regulator
Chain: B: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquitin-like protein (pup)2 complexed with the amino terminal coiled coil of the mycobacterium3 tuberculosis proteasomal atpase mpa
3c3m91D_
98.5 100
PDB header:hydrolase regulator
Chain: D: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquitin-like protein (pup)2 complexed with the amino terminal coiled coil of the mycobacterium3 tuberculosis proteasomal atpase mpa
4c3m9dQ_
98.3 100
PDB header:chaperone
Chain: Q: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquintin-like protein pup2 complexed with the hexameric proteasomal atpase mpa which includes3 the amino terminal coiled coil domain and the inter domain
5c3m9dP_
98.3 100
PDB header:chaperone
Chain: P: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquintin-like protein pup2 complexed with the hexameric proteasomal atpase mpa which includes3 the amino terminal coiled coil domain and the inter domain
6c3m9dR_
98.3 100
PDB header:chaperone
Chain: R: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquintin-like protein pup2 complexed with the hexameric proteasomal atpase mpa which includes3 the amino terminal coiled coil domain and the inter domain
7c3m9dG_
98.3 100
PDB header:chaperone
Chain: G: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquintin-like protein pup2 complexed with the hexameric proteasomal atpase mpa which includes3 the amino terminal coiled coil domain and the inter domain
8c3m9dI_
98.3 100
PDB header:chaperone
Chain: I: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquintin-like protein pup2 complexed with the hexameric proteasomal atpase mpa which includes3 the amino terminal coiled coil domain and the inter domain
9c3m9dH_
98.2 100
PDB header:chaperone
Chain: H: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquintin-like protein pup2 complexed with the hexameric proteasomal atpase mpa which includes3 the amino terminal coiled coil domain and the inter domain
10c4me7E_
54.8 25
PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:antitoxin endoai;
PDBTitle: crystal structure of bacillus subtilis toxin mazf in complex with2 cognate antitoxin maze
11c3v53E_
44.5 36
PDB header:rna binding protein
Chain: E: PDB Molecule:rna-binding protein 25;
PDBTitle: crystal structure of human rbm25
12c3ri2B_
42.2 24
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, padr-like family;
PDBTitle: crystal structure of padr family transcriptional regulator from2 eggerthella lenta dsm 2243
13d1or4a_
30.8 19
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
14c3lxxA_
27.2 32
PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 4;
PDBTitle: crystal structure of human gtpase imap family member 4
15d2hzab1
25.9 36
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
16c3j47P_
25.7 22
PDB header:protein binding
Chain: P: PDB Molecule:26s proteasome regulatory subunit rpn5;
PDBTitle: formation of an intricate helical bundle dictates the assembly of the2 26s proteasome lid
17c4dvgB_
25.1 32
PDB header:gtp binding/actin binding proteins
Chain: B: PDB Molecule:diaphanous protein;
PDBTitle: crystal structure of e. histolytica formin1 bound to ehrho1-gtpgammas
18d1mp1a_
24.1 18
Fold:PWI domain
Superfamily:PWI domain
Family:PWI domain
19c2cazF_
21.6 40
PDB header:protein transport
Chain: F: PDB Molecule:protein srn2;
PDBTitle: escrt-i core
20d2hzaa1
21.1 36
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
21c2jbxA_
not modelled 18.5 41
PDB header:apoptosis
Chain: A: PDB Molecule:m11l protein;
PDBTitle: crystal structure of the myxoma virus anti-apoptotic2 protein m11l
22d2bj7a1
not modelled 15.8 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
23c2f31A_
not modelled 15.8 29
PDB header:structural protein
Chain: A: PDB Molecule:diaphanous protein homolog 1;
PDBTitle: crystal structure of the autoinhibitory switch in formin mdia1; the2 did/dad complex
24c2k5eA_
not modelled 14.9 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195
25c3p1jC_
not modelled 14.9 30
PDB header:hydrolase
Chain: C: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
26d1hx1b_
not modelled 14.3 19
Fold:Spectrin repeat-like
Superfamily:BAG domain
Family:BAG domain
27d2qtia1
not modelled 14.0 40
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
28d2juwa1
not modelled 13.5 40
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
29c2o42B_
not modelled 13.1 41
PDB header:apoptosis inhibitor
Chain: B: PDB Molecule:m11l protein;
PDBTitle: crystal structure of m11l, bcl-2 homolog from myxoma virus
30c2vcpD_
not modelled 12.9 56
PDB header:structural protein
Chain: D: PDB Molecule:neural wiskott-aldrich syndrome protein;
PDBTitle: crystal structure of n-wasp vc domain in complex with skeletal actin
31c2vcpE_
not modelled 12.9 56
PDB header:structural protein
Chain: E: PDB Molecule:neural wiskott-aldrich syndrome protein;
PDBTitle: crystal structure of n-wasp vc domain in complex with skeletal actin
32c5us5B_
not modelled 12.7 25
PDB header:structural genomics
Chain: B: PDB Molecule:upf0297 protein ef_1202;
PDBTitle: solution structure of the ireb homodimer
33c2k19A_
not modelled 12.1 43
PDB header:antimicrobial protein
Chain: A: PDB Molecule:putative piscicolin 126 immunity protein;
PDBTitle: nmr solution structure of pisi
34c3zrjX_
not modelled 10.8 83
PDB header:chaperone/peptide
Chain: X: PDB Molecule:vipb;
PDBTitle: complex of clpv n-domain with vipb peptide
35d2jrxa1
not modelled 10.5 40
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
36d2jpqa1
not modelled 10.3 33
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
37c1z2tA_
not modelled 10.3 63
PDB header:lipid binding protein
Chain: A: PDB Molecule:anchor peptide ser65-leu87 of almgs;
PDBTitle: nmr structure study of anchor peptide ser65-leu87 of enzyme2 acholeplasma laidlawii monoglycosyldiacyl glycerol3 synthase (almgs) in dhpc micelles
38c3m3nW_
not modelled 10.0 56
PDB header:structural protein
Chain: W: PDB Molecule:neural wiskott-aldrich syndrome protein;
PDBTitle: structure of a longitudinal actin dimer assembled by tandem w domains
39d1v5sa_
not modelled 9.5 43
Fold:TBP-like
Superfamily:KA1-like
Family:Kinase associated domain 1, KA1
40c4c9yB_
not modelled 9.5 16
PDB header:cell cycle
Chain: B: PDB Molecule:spindle and kinetochore-associated protein 1;
PDBTitle: structural basis for the microtubule binding of the human2 kinetochore ska complex
41c4o6bA_
not modelled 9.4 31
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 1;
PDBTitle: dengue type2 virus non-structural protein 1 (ns1) form 1 crystal
42c3onjA_
not modelled 9.3 19
PDB header:protein transport
Chain: A: PDB Molecule:t-snare vti1;
PDBTitle: crystal structure of yeast vti1p_habc domain
43c4zvbD_
not modelled 9.2 5
PDB header:signaling protein
Chain: D: PDB Molecule:diguanylate cyclase dosc;
PDBTitle: crystal structure of globin domain of the e. coli dosc - form ii2 (ferrous)
44c4wfdA_
not modelled 9.1 26
PDB header:hydrolase
Chain: A: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of the rrp6-rrp47-mtr4 interaction
45c3zrjY_
not modelled 9.0 83
PDB header:chaperone/peptide
Chain: Y: PDB Molecule:vipb;
PDBTitle: complex of clpv n-domain with vipb peptide
46d1vcsa1
not modelled 8.6 14
Fold:STAT-like
Superfamily:t-snare proteins
Family:t-snare proteins
47c4uiqA_
not modelled 8.5 10
PDB header:transferase
Chain: A: PDB Molecule:globin-coupled sensor with diguanylate cyclase activity;
PDBTitle: isolated globin domain of the bordetella pertussis globin-2 coupled sensor with a heme at the dimer interface
48c1q5vB_
not modelled 8.4 28
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
49d2bapa1
not modelled 8.4 29
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Diap1 N-terninal region-like
50c2lycA_
not modelled 8.2 21
PDB header:protein binding
Chain: A: PDB Molecule:spindle and kinetochore-associated protein 1 homolog;
PDBTitle: structure of c-terminal domain of ska1
51d2plca_
not modelled 8.2 20
Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Bacterial PLC
52d2g84a1
not modelled 8.1 26
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
53d1kwga3
not modelled 8.0 25
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:A4 beta-galactosidase middle domain
54c2pl9E_
not modelled 7.9 83
PDB header:signaling protien
Chain: E: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal
55c2pl9F_
not modelled 7.9 83
PDB header:signaling protien
Chain: F: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal
56c2pl9D_
not modelled 7.9 83
PDB header:signaling protien
Chain: D: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal
57c5k6kB_
not modelled 7.8 38
PDB header:viral protein
Chain: B: PDB Molecule:zika virus protein;
PDBTitle: zika virus non-structural protein 1 (ns1)
58c2v8sV_
not modelled 7.8 29
PDB header:protein transport
Chain: V: PDB Molecule:vesicle transport through interaction with
PDBTitle: vti1b habc domain - epsinr enth domain complex
59c2w31A_
not modelled 7.8 26
PDB header:oxygen transport
Chain: A: PDB Molecule:globin;
PDBTitle: globin domain of geobacter sulfurreducens globin-coupled sensor
60d2juza1
not modelled 7.6 20
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
61c4geqF_
not modelled 7.5 50
PDB header:cell cycle
Chain: F: PDB Molecule:kinetochore-associated protein cnn1;
PDBTitle: crystal structure of the spc24-spc25/cnn1 binding interface
62c2jpkA_
not modelled 7.3 25
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit beta;
PDBTitle: lactococcin g-b in dpc
63d1i6pa_
not modelled 7.2 21
Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
64c2lciA_
not modelled 7.2 47
PDB header:de novo protein
Chain: A: PDB Molecule:protein or36;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or36 (casd3 target)
65c3ulpC_
not modelled 7.2 36
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:single-strand binding protein;
PDBTitle: plasmodium falciparum ssb complex with ssdna
66c4lkuD_
not modelled 7.1 64
PDB header:transport protein
Chain: D: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
67d3ulla_
not modelled 7.1 36
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
68c3p1jB_
not modelled 7.0 30
PDB header:hydrolase
Chain: B: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
69c4lkuC_
not modelled 7.0 64
PDB header:transport protein
Chain: C: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
70d2hgka1
not modelled 6.9 21
Fold:Bromodomain-like
Superfamily:YqcC-like
Family:YqcC-like
71c4lkuE_
not modelled 6.8 64
PDB header:transport protein
Chain: E: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
72d2ptda_
not modelled 6.8 15
Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Bacterial PLC
73c5j0kA_
not modelled 6.7 37
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein 2l4hc2_23;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
74d1l5ia_
not modelled 6.7 44
Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:DNA-binding domain of REP protein
75c4lkuB_
not modelled 6.5 64
PDB header:transport protein
Chain: B: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
76c4lkuA_
not modelled 6.5 64
PDB header:transport protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
77c2bj3D_
not modelled 6.4 32
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
78c4h62V_
not modelled 6.3 36
PDB header:transcription
Chain: V: PDB Molecule:mediator of rna polymerase ii transcription subunit 22;
PDBTitle: structure of the saccharomyces cerevisiae mediator subcomplex2 med17c/med11c/med22c
79c6dkmA_
not modelled 6.2 45
PDB header:de novo protein
Chain: A: PDB Molecule:dhd131_a;
PDBTitle: dhd131
80d2fdoa1
not modelled 6.0 50
Fold:AF2331-like
Superfamily:AF2331-like
Family:AF2331-like
81c1nzeA_
not modelled 5.9 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxygen-evolving enhancer protein 3;
PDBTitle: crystal structure of psbq polypeptide of photosystem ii2 from higher plants
82d1nzea_
not modelled 5.9 8
Fold:Four-helical up-and-down bundle
Superfamily:Oxygen-evolving enhancer protein 3,
Family:Oxygen-evolving enhancer protein 3,
83c6a6iG_
not modelled 5.8 42
PDB header:hydrolase
Chain: G: PDB Molecule:excision repair cross-complementing rodent repair
PDBTitle: crystal structure of the winged-helix domain of cockayne syndrome2 group b protein in complex with ubiquitin
84d2dt5a1
not modelled 5.8 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional repressor Rex, N-terminal domain
85c2xtdB_
not modelled 5.7 50
PDB header:transcription
Chain: B: PDB Molecule:tbl1 f-box-like/wd repeat-containing protein tbl1x;
PDBTitle: structure of the tbl1 tetramerisation domain
86c5f9yB_
not modelled 5.7 21
PDB header:ligase
Chain: B: PDB Molecule:aminoacyl-trna synthetase;
PDBTitle: crystal structure of prolyl-trna synthetase from cryptosporidium2 parvum complexed with l-proline and amp
87c3j21Q_
not modelled 5.5 23
PDB header:ribosome
Chain: Q: PDB Molecule:50s ribosomal protein l19e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
88c2xteH_
not modelled 5.5 50
PDB header:transcription
Chain: H: PDB Molecule:f-box-like/wd repeat-containing protein tbl1x;
PDBTitle: structure of the tbl1 tetramerisation domain
89c4g0mB_
not modelled 5.5 18
PDB header:gene regulation
Chain: B: PDB Molecule:protein argonaute 2;
PDBTitle: crystal structure of arabidopsis thaliana ago2 mid domain
90d1xhja_
not modelled 5.5 32
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
91c4esfA_
not modelled 5.3 21
PDB header:transcription
Chain: A: PDB Molecule:padr-like transcriptional regulator;
PDBTitle: crystal structure of padr-like transcriptional regulator (bce3449)2 from bacillus cereus strain atcc 10987
92d2csba1
not modelled 5.3 31
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
93c4c0nA_
not modelled 5.3 14
PDB header:oxygen transport
Chain: A: PDB Molecule:2-on-2 hemoglobin;
PDBTitle: crystal structure of non symbiotic plant hemoglobin ahb3 (glb3) from2 arabidopsis thaliana
94d2otaa1
not modelled 5.2 20
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
95c6ahrL_
not modelled 5.2 30
PDB header:hydrolase/rna
Chain: L: PDB Molecule:ribonuclease p protein subunit p40;
PDBTitle: cryo-em structure of human ribonuclease p
96d1rq8a_
not modelled 5.2 33
Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
97c5dolB_
not modelled 5.1 32
PDB header:replication
Chain: B: PDB Molecule:initiation-control protein yaba;
PDBTitle: crystal structure of yaba amino-terminal domain from bacillus subtilis
98c3v18A_
not modelled 5.1 15
PDB header:lyase
Chain: A: PDB Molecule:1-phosphatidylinositol phosphodiesterase;
PDBTitle: structure of the phosphatidylinositol-specific phospholipase c from2 staphylococcus aureus
99c5a48B_
not modelled 5.1 29
PDB header:protein binding
Chain: B: PDB Molecule:maternal effect protein oskar;
PDBTitle: crystal structure of the lotus domain (aa 139-240) of drosophila2 oskar in p65

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