Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2112c_(-)_2370913_2372577
DateMon Aug 5 13:25:23 BST 2019
Unique Job IDe12fcf04cc6a29e6
SequenceMFWVGGPCLM ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:63.397 Y:63.884 Z:64.178
Model (left) based on template c4b0sA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:deamidase-depupylase dop;
PDBTitle: structure of the deamidase-depupylase dop of the prokaryotic2 ubiquitin-like modification pathway in complex with atp
Confidence and coverage
Confidence:100.0% Coverage: 82%
452 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4b0sA_



100.0 63
PDB header:hydrolase
Chain: A: PDB Molecule:deamidase-depupylase dop;
PDBTitle: structure of the deamidase-depupylase dop of the prokaryotic2 ubiquitin-like modification pathway in complex with atp
2c4b0tB_



100.0 38
PDB header:ligase
Chain: B: PDB Molecule:pup--protein ligase;
PDBTitle: structure of the pup ligase pafa of the prokaryotic2 ubiquitin-like modification pathway in complex with adp
3c4bjrA_



100.0 36
PDB header:ligase
Chain: A: PDB Molecule:pup--protein ligase, prokaryotic ubiquitin-like protein
PDBTitle: crystal structure of the complex between prokaryotic2 ubiquitin-like protein pup and its ligase pafa
4d1r8ga_



95.1 15
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamate-cysteine ligase family 2 (GCS2)
5c5cywB_



48.4 36
PDB header:viral protein
Chain: B: PDB Molecule:interferon antagonist c7;
PDBTitle: crystal structure of vaccinia virus c7
6c5cz3B_



46.5 36
PDB header:viral protein
Chain: B: PDB Molecule:m64r;
PDBTitle: crystal structure of myxoma virus m64
7d2jg0a1



37.7 16
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Trehalase-like
8c2jg0A_



37.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:periplasmic trehalase;
PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin
9d1tt4a_



30.2 17
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamate-cysteine ligase family 2 (GCS2)
10c1tt4B_



29.7 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative cytoplasmic protein;
PDBTitle: structure of np459575, a predicted glutathione synthase from2 salmonella typhimurium
11c4i9gB_



29.2 18
PDB header:hydrolase
Chain: B: PDB Molecule:glycerol 3-phosphate phosphatase;
PDBTitle: crystal structure of glycerol phosphate phosphatase rv1692 from2 mycobacterium tuberculosis in complex with magnesium
12c2kseA_



26.6 17
PDB header:transferase
Chain: A: PDB Molecule:sensor protein qsec;
PDBTitle: backbone structure of the membrane domain of e. coli histidine kinase2 receptor qsec, center for structures of membrane proteins (csmp)3 target 4311c
13c5gmxA_



26.4 27
PDB header:hydrolase
Chain: A: PDB Molecule:carboxylesterase;
PDBTitle: crystal structure of a family viii carboxylesterase
14c5e2hB_



23.7 26
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of d-alanine carboxypeptidase ampc from2 mycobacterium smegmatis
15c2h2wA_



22.8 14
PDB header:transferase
Chain: A: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution
16d2gc6a1



20.1 21
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:Folylpolyglutamate synthetase, C-terminal domain
17c2qz6A_



20.1 29
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: first crystal structure of a psychrophile class c beta-2 lactamase
18c5tgfB_



19.1 27
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of putative beta-lactamase from bacteroides dorei2 dsm 17855
19d1yqsa1



17.8 31
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
20c6njkA_



17.8 31
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase from sulfitobacter sp. ee-36
21c3ex7I_



not modelled 17.2 17
PDB header:hydrolase/rna binding protein/rna
Chain: I: PDB Molecule:protein casc3;
PDBTitle: the crystal structure of ejc in its transition state
22c5evlA_



not modelled 16.7 30
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase/d-alanine carboxypeptidase from2 chromobacterium violaceum
23c2vvdA_



not modelled 16.7 36
PDB header:viral protein
Chain: A: PDB Molecule:spike protein p1;
PDBTitle: crystal structure of the receptor binding domain of the2 spike protein p1 from bacteriophage pm2
24d2hdsa1



not modelled 16.5 31
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
25c3wwxA_



not modelled 16.5 35
PDB header:hydrolase
Chain: A: PDB Molecule:s12 family peptidase;
PDBTitle: crystal structure of d-stereospecific amidohydrolase from streptomyces2 sp. 82f2
26c3vepX_



not modelled 16.2 37
PDB header:membrane protein/transcription
Chain: X: PDB Molecule:uncharacterized protein rv3413c/mt3522;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
27d2hwja1



not modelled 16.2 33
Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:Atu1540-like
28c2qmiH_



not modelled 16.1 42
PDB header:hydrolase
Chain: H: PDB Molecule:pbp related beta-lactamase;
PDBTitle: structure of the octameric penicillin-binding protein2 homologue from pyrococcus abyssi
29c3vepC_



not modelled 16.1 37
PDB header:membrane protein/transcription
Chain: C: PDB Molecule:uncharacterized protein rv3413c/mt3522;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
30c5m4aA_



not modelled 16.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:neutral trehalase;
PDBTitle: neutral trehalase nth1 from saccharomyces cerevisiae in complex with2 trehalose
31c5cqqB_



not modelled 15.5 18
PDB header:transcription/dna
Chain: B: PDB Molecule:regulatory protein zeste;
PDBTitle: crystal structure of the drosophila zeste dna binding domain in2 complex with dna
32d1dy2a_



not modelled 15.5 18
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Endostatin
33c3tadB_



not modelled 15.5 17
PDB header:protein binding
Chain: B: PDB Molecule:liprin-alpha-2;
PDBTitle: crystal structure of the liprin-alpha/liprin-beta complex
34c6f36M_



not modelled 15.3 31
PDB header:proton transport
Chain: M: PDB Molecule:mitochondrial atp synthase subunit 6;
PDBTitle: polytomella fo model
35c3o3vB_



not modelled 15.3 31
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of clbp peptidase domain
36c2wzzA_



not modelled 14.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: amp-c beta-lactamase (pseudomonas aeruginosa)in complex2 with compound m-03
37d1tvfa2



not modelled 14.4 25
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
38d1u7ka_



not modelled 14.3 15
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
39d2olra2



not modelled 13.4 11
Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
40d1rgya_



not modelled 13.3 31
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
41c5e2gA_



not modelled 13.0 38
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of d-alanine carboxypeptidase ampc from burkholderia2 cenocepacia
42c3hleA_



not modelled 13.0 48
PDB header:transferase
Chain: A: PDB Molecule:transesterase;
PDBTitle: simvastatin synthase (lovd), from aspergillus terreus, s5 mutant, s76a2 mutant, complex with monacolin j acid
43d1u7za_



not modelled 12.7 19
Fold:Ribokinase-like
Superfamily:CoaB-like
Family:CoaB-like
44c3ws1A_



not modelled 12.4 35
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: n288q-n321q mutant beta-lactamase derived from chromohalobacter sp.5602 (condition-1b)
45c3ozhA_



not modelled 11.8 33
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase/d-alanine carboxypeptidase;
PDBTitle: crystal structure of beta-lactamase/d-alanine carboxypeptidase from2 yersinia pestis
46d1o5za1



not modelled 11.6 33
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:Folylpolyglutamate synthetase, C-terminal domain
47c4gdnB_



not modelled 11.4 39
PDB header:hydrolase
Chain: B: PDB Molecule:protein flp;
PDBTitle: structure of fmta-like protein
48c5gkvA_



not modelled 11.3 35
PDB header:hydrolase
Chain: A: PDB Molecule:esterase a;
PDBTitle: crystal structure of a novel penicillin-binding protein (pbp) homolog2 from caulobacter crescentus
49c2f7lA_



not modelled 11.3 16
PDB header:isomerase
Chain: A: PDB Molecule:455aa long hypothetical phospho-sugar mutase;
PDBTitle: crystal structure of sulfolobus tokodaii2 phosphomannomutase/phosphoglucomutase
50d2hmva1



not modelled 11.2 42
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
51d1ci9a_



not modelled 11.2 42
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
52c2vveB_



not modelled 11.1 36
PDB header:viral protein
Chain: B: PDB Molecule:spike protein p1;
PDBTitle: crystal structure of the stem and receptor binding domain2 of the spike protein p1 from bacteriophage pm2
53c4p6bB_



not modelled 11.1 35
PDB header:hydrolase
Chain: B: PDB Molecule:est-y29;
PDBTitle: crystal structure of est-y29,a novel penicillin-binding protein/beta-2 lactamase homolog from a metagenomic library
54c3btpB_



not modelled 10.9 55
PDB header:dna binding protein, chaperone
Chain: B: PDB Molecule:protein vire1;
PDBTitle: crystal structure of agrobacterium tumefaciens vire2 in complex with2 its chaperone vire1: a novel fold and implications for dna binding
55c2mn3A_



not modelled 10.9 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-bvl;
PDBTitle: structure of platypus 'intermediate' defensin-like peptide (int-dlp)
56c5yisC_



not modelled 10.9 20
PDB header:protein binding
Chain: C: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of ankb lir/lc3b complex
57c4netA_



not modelled 10.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:ampc;
PDBTitle: crystal structure of adc-1 beta-lactamase
58c4wa0A_



not modelled 10.7 38
PDB header:cell adhesion
Chain: A: PDB Molecule:possible adhesin;
PDBTitle: the structure of a possible adhesin c-terminal domain from2 caldicellulosiruptor kronotskyensis
59c1exdA_



not modelled 10.7 24
PDB header:ligase/rna
Chain: A: PDB Molecule:glutaminyl-trna synthetase;
PDBTitle: crystal structure of a tight-binding glutamine trna bound2 to glutamine aminoacyl trna synthetase
60d1onha_



not modelled 10.7 38
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
61c6mtgB_



not modelled 10.6 29
PDB header:transferase
Chain: B: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: a single reactive noncanonical amino acid is able to dramatically2 stabilize protein structure
62c3tg9A_



not modelled 10.6 35
PDB header:penicillin binding protein
Chain: A: PDB Molecule:penicillin-binding protein;
PDBTitle: the crystal structure of penicillin binding protein from bacillus2 halodurans
63d2ghra1



not modelled 10.4 19
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:HTS-like
64d1pixa3



not modelled 10.4 24
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
65d2dkya1



not modelled 10.4 32
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Variant SAM domain
66c3zytA_



not modelled 10.3 26
PDB header:hydrolase
Chain: A: PDB Molecule:esterase a;
PDBTitle: structure determination of esta from arthrobacter nitroguajacolicus2 rue61a
67c1zkjA_



not modelled 10.3 29
PDB header:hydrolase
Chain: A: PDB Molecule:extended-spectrum beta-lactamase;
PDBTitle: structural basis for the extended substrate spectrum of cmy-2 10, a plasmid-encoded class c beta-lactamase
68c5eviC_



not modelled 9.8 26
PDB header:hydrolase
Chain: C: PDB Molecule:beta-lactamase/d-alanine carboxypeptidase;
PDBTitle: crystal structure of beta-lactamase/d-alanine carboxypeptidase from2 pseudomonas syringae
69c2xkyI_



not modelled 9.7 23
PDB header:metal transport
Chain: I: PDB Molecule:inward rectifier potassium channel 2;
PDBTitle: single particle analysis of kir2.1nc_4 in negative stain
70d1wo8a1



not modelled 9.3 22
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Methylglyoxal synthase, MgsA
71c3i7jB_



not modelled 9.3 26
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase mb2281c;
PDBTitle: crystal structure of a beta-lactamase (mb2281c) from mycobacterium2 bovis, northeast structural genomics consortium target mbr246
72d1rzhh1



not modelled 9.1 21
Fold:PRC-barrel domain
Superfamily:PRC-barrel domain
Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain
73c4h3sA_



not modelled 9.0 24
PDB header:ligase
Chain: A: PDB Molecule:glutamine-trna ligase;
PDBTitle: the structure of glutaminyl-trna synthetase from saccharomyces2 cerevisiae
74c4ivkA_



not modelled 9.0 48
PDB header:hydrolase
Chain: A: PDB Molecule:carboxylesterases;
PDBTitle: crystal structure of a fammily viii carboxylesterase in a complex with2 cephalothin.
75c5zdoA_



not modelled 8.9 29
PDB header:ligase
Chain: A: PDB Molecule:glutamine-trna ligase;
PDBTitle: crystal structure analysis of ttqrs in co-crystallised with atp
76d2drwa1



not modelled 8.9 26
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
77c4im2A_



not modelled 8.9 28
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:serine/threonine-protein kinase tbk1;
PDBTitle: structure of tank-binding kinase 1
78c5zh8B_



not modelled 8.9 31
PDB header:hydrolase
Chain: B: PDB Molecule:protein fmta;
PDBTitle: crystal structure of fmta from staphylococcus aureus at 2.58 a
79c1w8xM_



not modelled 8.7 36
PDB header:virus
Chain: M: PDB Molecule:protein p30;
PDBTitle: structural analysis of prd1
80d1x4ka2



not modelled 8.6 50
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
81d1fs2b1



not modelled 8.6 7
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
82c4k7cA_



not modelled 8.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase c;
PDBTitle: crystal structure of pepw from lactobacillus rhamnosis hn001 (dr20)2 determined as the selenomet derivative
83c5bnzA_



not modelled 8.6 24
PDB header:ligase
Chain: A: PDB Molecule:glutamine--trna ligase;
PDBTitle: crystal structure of glutamine-trna ligase /glutaminyl-trna synthetase2 (glnrs) from pseudomonas aeruginosa
84c3kuzA_



not modelled 8.4 18
PDB header:signaling protein
Chain: A: PDB Molecule:plexin-c1;
PDBTitle: crystal structure of the ubiquitin like domain of plxnc1
85c3gp8A_



not modelled 8.3 20
PDB header:hydrolase/dna
Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd, putative;
PDBTitle: crystal structure of the binary complex of recd2 with dna
86d1cpqa_



not modelled 8.3 33
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
87c2my5A_



not modelled 8.2 20
PDB header:transport protein
Chain: A: PDB Molecule:peptidyl carrier protein;
PDBTitle: solution structure of kstb-pcp in kosinostatin biosynthesis
88d1e85a_



not modelled 8.1 33
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
89c4ye6A_



not modelled 8.0 29
PDB header:ligase
Chain: A: PDB Molecule:glutamine--trna ligase;
PDBTitle: the crystal structure of the intact human glnrs
90c2w0cL_



not modelled 8.0 36
PDB header:virus
Chain: L: PDB Molecule:protein 2;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2
91c3h6nA_



not modelled 8.0 26
PDB header:signaling protein
Chain: A: PDB Molecule:plexin-d1;
PDBTitle: crystal structure of the ubiquitin-like domain of plexin d1
92d1nosa_



not modelled 7.8 10
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
93c2i5nH_



not modelled 7.8 28
PDB header:photosynthesis
Chain: H: PDB Molecule:reaction center protein h chain;
PDBTitle: 1.96 a x-ray structure of photosynthetic reaction center from2 rhodopseudomonas viridis:crystals grown by microfluidic technique
94d1s05a_



not modelled 7.8 50
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
95c3c85A_



not modelled 7.7 36
PDB header:transport protein
Chain: A: PDB Molecule:putative glutathione-regulated potassium-efflux system
PDBTitle: crystal structure of trka domain of putative glutathione-regulated2 potassium-efflux kefb from vibrio parahaemolyticus
96c5hw3A_



not modelled 7.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of a beta lactamase from burkholderia vietnamiensis
97c4hesA_



not modelled 7.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase class a-like protein;
PDBTitle: structure of a beta-lactamase class a-like protein from veillonella2 parvula.
98c4zqaA_



not modelled 7.5 22
PDB header:transcription repressor
Chain: A: PDB Molecule:sin3 histone deacetylase corepressor complex component
PDBTitle: crystal structure of the sds3 dimerization domain
99c5butG_



not modelled 7.5 42
PDB header:membrane protein
Chain: G: PDB Molecule:ktr system potassium uptake protein a,ktr system potassium
PDBTitle: crystal structure of inactive conformation of ktrab k+ transporter

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