Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2113_(-)_2372638_2373831
DateMon Aug 5 13:25:23 BST 2019
Unique Job ID690096e40b93d49d
SequenceMSLSVRRPPA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:20.233 Y:34.099 Z:36.510
Model (left) based on template c3fwbB_
Top template information
PDB header:cell cycle, transcription
Chain: B: PDB Molecule:nuclear mrna export protein sac3;
PDBTitle: sac3:sus1:cdc31 complex
Confidence and coverage
Confidence: 70.6% Coverage: 7%
29 residues ( 7% of your sequence) have been modelled with 70.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3fwbB_
70.6 31
PDB header:cell cycle, transcription
Chain: B: PDB Molecule:nuclear mrna export protein sac3;
PDBTitle: sac3:sus1:cdc31 complex
2c4ndlC_
38.9 30
PDB header:de novo protein
Chain: C: PDB Molecule:enh-c2b, computational designed homodimer;
PDBTitle: computational design and experimental verification of a symmetric2 homodimer
3d2axtz1
34.8 21
Fold:Transmembrane helix hairpin
Superfamily:PsbZ-like
Family:PsbZ-like
4d2obba1
24.0 33
Fold:HAD-like
Superfamily:HAD-like
Family:BT0820-like
5c4ndkA_
23.4 33
PDB header:fluorescent protein, de novo protein
Chain: A: PDB Molecule:e23p-yfp, gfp-like fluorescent chromoprotein fp506,
PDBTitle: crystal structure of a computational designed engrailed homeodomain2 variant fused with yfp
6d1b33n_
19.7 36
Fold:Allophycocyanin linker chain (domain)
Superfamily:Allophycocyanin linker chain (domain)
Family:Allophycocyanin linker chain (domain)
7d1dw0a_
16.8 19
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
8d1u6ra1
14.4 42
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
9d1gu2a_
14.3 31
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
10d1m15a1
12.9 50
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
11d1v8ca2
12.9 56
Fold:TBP-like
Superfamily:MoaD-related protein, C-terminal domain
Family:MoaD-related protein, C-terminal domain
12c5lqwL_
12.8 50
PDB header:splicing
Chain: L: PDB Molecule:pre-mrna-splicing factor cwc26;
PDBTitle: yeast activated spliceosome
13d1vrpa1
12.4 40
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
14d1u6ka1
12.1 48
Fold:F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
Superfamily:F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
Family:F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
15c5y0tD_
11.4 38
PDB header:ligase
Chain: D: PDB Molecule:thermotoga maritima tmcal;
PDBTitle: crystal structure of thermotoga maritima tmcal bound with alpha-thio2 atp(form ii)
16d1g0wa1
11.2 40
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
17d1i0ea1
11.0 40
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
18d1crka1
10.9 40
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
19d1qh4a1
10.3 40
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
20d1qk1a1
10.2 40
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
21d1oo2a_
not modelled 9.7 6
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
22d1ttaa_
not modelled 9.2 13
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
23d1f86a_
not modelled 8.5 12
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
24c5ixiB_
not modelled 8.3 54
PDB header:cytokine
Chain: B: PDB Molecule:chimera protein of interferon lambda receptor 1 and
PDBTitle: structure of human jak1 ferm/sh2 in complex with ifnlr1/il10ra chimera
25d1kgia_
not modelled 7.8 13
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
26c5y0nB_
not modelled 7.6 41
PDB header:ligase
Chain: B: PDB Molecule:upf0348 protein b4417_3650;
PDBTitle: crystal structure of bacillus subtilis tmcal bound with atp (semet2 derivative)
27c2dg7A_
not modelled 7.2 23
PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2)
28c6gctA_
not modelled 7.1 16
PDB header:membrane protein
Chain: A: PDB Molecule:neutral amino acid transporter b(0);
PDBTitle: cryo-em structure of the human neutral amino acid transporter asct2
29d1hf2a2
not modelled 6.8 16
Fold:Cell-division inhibitor MinC, N-terminal domain
Superfamily:Cell-division inhibitor MinC, N-terminal domain
Family:Cell-division inhibitor MinC, N-terminal domain
30c3qvaB_
not modelled 6.6 41
PDB header:hydrolase
Chain: B: PDB Molecule:transthyretin-like protein;
PDBTitle: structure of klebsiella pneumoniae 5-hydroxyisourate hydrolase
31c2l1nA_
not modelled 6.5 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the protein yp_399305.1
32c5vkqC_
not modelled 6.5 17
PDB header:membrane protein
Chain: C: PDB Molecule:no mechanoreceptor potential c isoform l;
PDBTitle: structure of a mechanotransduction ion channel drosophila nompc in2 nanodisc
33c2l3wA_
not modelled 6.2 27
PDB header:photosynthesis
Chain: A: PDB Molecule:phycobilisome rod linker polypeptide;
PDBTitle: solution nmr structure of the pbs linker domain of phycobilisome rod2 linker polypeptide from synechococcus elongatus, northeast structural3 genomics consortium target snr168a
34c4dh4A_
not modelled 6.2 13
PDB header:isomerase
Chain: A: PDB Molecule:mif;
PDBTitle: macrophage migration inhibitory factor toxoplasma gondii
35c4z1mJ_
not modelled 6.1 44
PDB header:hydrolase
Chain: J: PDB Molecule:atpase inhibitor, mitochondrial;
PDBTitle: bovine f1-atpase inhibited by three copies of the inhibitor protein2 if1 crystallised in the presence of thiophosphate.
36c2qkwA_
not modelled 6.1 63
PDB header:transferase
Chain: A: PDB Molecule:avirulence protein;
PDBTitle: structural basis for activation of plant immunity by2 bacterial effector protein avrpto
37d2qkwa1
not modelled 6.1 63
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Avirulence protein AvrPto
Family:Avirulence protein AvrPto
38c4z1mI_
not modelled 6.0 40
PDB header:hydrolase
Chain: I: PDB Molecule:atpase inhibitor, mitochondrial;
PDBTitle: bovine f1-atpase inhibited by three copies of the inhibitor protein2 if1 crystallised in the presence of thiophosphate.
39c4tt3I_
not modelled 6.0 40
PDB header:hydrolase
Chain: I: PDB Molecule:atpase inhibitor, mitochondrial;
PDBTitle: the pathway of binding of the intrinsically disordered mitochondrial2 inhibitor protein to f1-atpase
40c3t5vE_
not modelled 6.0 19
PDB header:transcription
Chain: E: PDB Molecule:nuclear mrna export protein thp1;
PDBTitle: sac3:thp1:sem1 complex
41c5ietA_
not modelled 6.0 19
PDB header:gene regulation
Chain: A: PDB Molecule:bacterial proteasome activator;
PDBTitle: crystal structure of mycobacterium tuberculosis atp-independent2 proteasome activator
42c2h1xB_
not modelled 6.0 12
PDB header:hydrolase
Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as
PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein)
43c3jcuz_
not modelled 5.9 34
PDB header:membrane protein
Chain: Z: PDB Molecule:photosystem ii reaction center protein z;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
44c1ohhH_
not modelled 5.7 40
PDB header:synthase
Chain: H: PDB Molecule:atpase inhibitor, mitochondrial;
PDBTitle: bovine mitochondrial f1-atpase complexed with the inhibitor2 protein if1
45d1smye_
not modelled 5.5 38
Fold:RPB6/omega subunit-like
Superfamily:RPB6/omega subunit-like
Family:RNA polymerase omega subunit
46c2cw1A_
not modelled 5.5 60
PDB header:de novo protein
Chain: A: PDB Molecule:sn4m;
PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein
47c3zbeA_
not modelled 5.5 8
PDB header:toxin-antitoxin
Chain: A: PDB Molecule:paaa2;
PDBTitle: e. coli o157 pare2-associated antitoxin 2 (paaa2)
48c2rukA_
not modelled 5.4 36
PDB header:transcription
Chain: A: PDB Molecule:cellular tumor antigen p53;
PDBTitle: solution structure of the complex between p53 transactivation domain 22 and tfiih p62 ph domain
49d1x4ta1
not modelled 5.4 41
Fold:Long alpha-hairpin
Superfamily:ISY1 domain-like
Family:ISY1 N-terminal domain-like
50c1pnbA_
not modelled 5.3 8
PDB header:seed storage protein
Chain: A: PDB Molecule:napin bnib;
PDBTitle: structure of napin bnib, nmr, 10 structures
51c1q90M_
not modelled 5.2 33
PDB header:photosynthesis
Chain: M: PDB Molecule:cytochrome b6f complex subunit petm;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below