Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2114_(-)_2373842_2374465
DateMon Aug 5 13:25:23 BST 2019
Unique Job ID61f801dbbb0447ff
SequenceMSAPERVTGL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.176 Y:37.541 Z:35.576
Model (left) based on template c3m3iC_
Top template information
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: hypothetical protein from leishmania major
Confidence and coverage
Confidence: 67.2% Coverage: 30%
63 residues ( 30% of your sequence) have been modelled with 67.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3m3iC_
67.2 16
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: hypothetical protein from leishmania major
2d1yuda1
46.6 20
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YML079-like
3d1ejxb_
45.9 38
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
4d1vm9a_
43.4 18
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
5c4z42B_
40.9 23
PDB header:hydrolase
Chain: B: PDB Molecule:urease subunit beta;
PDBTitle: crystal structure of urease from yersinia enterocolitica
6c3lzzB_
40.6 26
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structures of cupin superfamily bbduf985 from branchiostoma2 belcheri tsingtauense in apo and gdp-bound forms
7d2axoa1
40.5 20
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Atu2684-like
8d1q1oa_
37.9 11
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
9d1e9ya1
37.8 27
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
10d4ubpb_
37.7 31
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
11c3l4hA_
36.8 47
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw1;
PDBTitle: helical box domain and second ww domain of the human e3 ubiquitin-2 protein ligase hecw1
12c1e9zA_
36.2 27
PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit alpha;
PDBTitle: crystal structure of helicobacter pylori urease
13c1zofB_
35.9 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide-reductase;
PDBTitle: crystal structure of alkyl hydroperoxide-reductase (ahpc)2 from helicobacter pylori
14c2axoA_
34.8 20
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein atu2684;
PDBTitle: x-ray crystal structure of protein agr_c_4864 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr35.
15c2mdwA_
34.5 44
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of a strand-swapped dimer of the ww domain
16c5h3kA_
34.0 30
PDB header:unknown function
Chain: A: PDB Molecule:slr0280 protein;
PDBTitle: crystal structure of a hypothetical protein from synechocystis
17c1zswA_
32.6 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:glyoxalase family protein;
PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family
18c1ymzA_
31.1 45
PDB header:unknown function
Chain: A: PDB Molecule:cc45;
PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis
19c2v2gC_
30.3 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:peroxiredoxin 6;
PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form
20d2e45a1
30.2 50
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
21c2ysbA_
not modelled 29.8 57
PDB header:protein binding
Chain: A: PDB Molecule:salvador homolog 1 protein;
PDBTitle: solution structure of the first ww domain from the mouse2 salvador homolog 1 protein (sav1)
22c3qgaD_
not modelled 28.6 23
PDB header:hydrolase
Chain: D: PDB Molecule:fusion of urease beta and gamma subunits;
PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
23c1e0mA_
not modelled 26.6 33
PDB header:de novo protein
Chain: A: PDB Molecule:wwprototype;
PDBTitle: prototype ww domain
24c2lb0A_
not modelled 26.0 40
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
25c2lazA_
not modelled 26.0 40
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
26c2ysfA_
not modelled 25.5 40
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch
27d2ysca1
not modelled 25.5 67
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
28c3qsjA_
not modelled 25.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius
29c4huzA_
not modelled 25.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:2,6-dichloro-p-hydroquinone 1,2-dioxygenase;
PDBTitle: 2,6-dichloro-p-hydroquinone 1,2-dioxygenase
30d1ig4a_
not modelled 24.4 27
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
31d2ho2a1
not modelled 24.2 71
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
32c3e0rC_
not modelled 24.0 14
PDB header:hydrolase
Chain: C: PDB Molecule:c3-degrading proteinase (cppa protein);
PDBTitle: crystal structure of cppa protein from streptococcus pneumoniae tigr4
33c2ky8A_
not modelled 23.7 36
PDB header:transcription/dna
Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2;
PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence
34d1xe7a_
not modelled 23.6 28
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YML079-like
35d1pina1
not modelled 23.5 57
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
36c2jmfA_
not modelled 23.4 44
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase suppressor of deltex;
PDBTitle: solution structure of the su(dx) ww4- notch py peptide2 complex
37c2yshA_
not modelled 23.3 40
PDB header:protein binding
Chain: A: PDB Molecule:growth-arrest-specific protein 7;
PDBTitle: solution structure of the ww domain from the human growth-2 arrest-specific protein 7, gas-7
38c2ez5W_
not modelled 23.3 44
PDB header:signalling protein,ligase
Chain: W: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the dnedd4 ww3* domain- comm lpsy2 peptide complex
39d1qk9a_
not modelled 23.2 36
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
40c2ysdA_
not modelled 23.2 33
PDB header:protein binding
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: solution structure of the first ww domain from the human2 membrane-associated guanylate kinase, ww and pdz domain-3 containing protein 1. magi-1
41c1wr4A_
not modelled 23.1 44
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2;
PDBTitle: solution structure of the second ww domain of nedd4-2
42c2dwvB_
not modelled 22.6 46
PDB header:protein binding
Chain: B: PDB Molecule:salvador homolog 1 protein;
PDBTitle: solution structure of the second ww domain from mouse2 salvador homolog 1 protein (mww45)
43d1eh9a2
not modelled 22.6 24
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
44c1yiuA_
not modelled 22.5 56
PDB header:ligase
Chain: A: PDB Molecule:itchy e3 ubiquitin protein ligase;
PDBTitle: itch e3 ubiquitin ligase ww3 domain
45d1tk7a2
not modelled 22.5 44
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
46c3itwA_
not modelled 22.2 25
PDB header:peptide binding protein
Chain: A: PDB Molecule:protein tiox;
PDBTitle: crystal structure of tiox from micromonospora sp. ml1
47d1i8gb_
not modelled 22.2 57
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
48c4lqbA_
not modelled 21.9 28
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein kfla3161
49c5ydyA_
not modelled 21.6 44
PDB header:signaling protein
Chain: A: PDB Molecule:ww2 domain and ppxy motif complex;
PDBTitle: nmr structure of yap1-2 ww2 domain with lats1 ppxy motif complex
50c2djyA_
not modelled 21.5 44
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:smad ubiquitination regulatory factor 2;
PDBTitle: solution structure of smurf2 ww3 domain-smad7 py peptide2 complex
51c2kq0A_
not modelled 21.4 44
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: human nedd4 3rd ww domain complex with ebola zaire virus matrix2 protein vp40 derived peptide ilptappeymea
52d2jmfa1
not modelled 21.3 44
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
53d1k9ra_
not modelled 21.1 56
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
54c3gknA_
not modelled 21.0 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein;
PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures
55c2kykA_
not modelled 20.7 44
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: the sandwich region between two lmp2a py motif regulates the2 interaction between aip4ww2domain and py motif
56c2ysgA_
not modelled 20.5 40
PDB header:protein binding
Chain: A: PDB Molecule:syntaxin-binding protein 4;
PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4
57c6j69A_
not modelled 20.4 45
PDB header:cell cycle
Chain: A: PDB Molecule:protein kibra;
PDBTitle: structure of kibra and dendrin complex
58d1tk7a1
not modelled 19.8 44
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
59d2itka1
not modelled 19.7 44
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
60c3oajA_
not modelled 19.7 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative ring-cleaving dioxygenase mhqo;
PDBTitle: crystal structure of putative dioxygenase from bacillus subtilis2 subsp. subtilis str. 168
61c3vxvA_
not modelled 19.7 27
PDB header:hydrolase/dna
Chain: A: PDB Molecule:methyl-cpg-binding domain protein 4;
PDBTitle: crystal structure of methyl cpg binding domain of mbd4 in complex with2 the 5mcg/tg sequence
62d1ub1a_
not modelled 19.7 36
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
63d1i5hw_
not modelled 19.3 56
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
64d2cuqa1
not modelled 19.2 29
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
65c1wr7A_
not modelled 19.0 44
PDB header:ligase
Chain: A: PDB Molecule:nedd4-2;
PDBTitle: solution structure of the third ww domain of nedd4-2
66d1avaa1
not modelled 18.8 60
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
67d3ovwa_
not modelled 18.8 21
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Glycosyl hydrolase family 7 catalytic core
68c2dmvA_
not modelled 18.7 44
PDB header:ligase
Chain: A: PDB Molecule:itchy homolog e3 ubiquitin protein ligase;
PDBTitle: solution structure of the second ww domain of itchy homolog2 e3 ubiquitin protein ligase (itch)
69d1nmva1
not modelled 18.4 40
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
70c2yscA_
not modelled 18.2 44
PDB header:protein binding
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family
PDBTitle: solution structure of the ww domain from the human amyloid2 beta a4 precursor protein-binding family b member 3, apbb3
71c2lawA_
not modelled 18.1 44
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:yorkie homolog;
PDBTitle: structure of the second ww domain from human yap in complex with a2 human smad1 derived peptide
72d1tu1a_
not modelled 18.0 25
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:PA0094-like
73c2qkdA_
not modelled 17.9 19
PDB header:signaling protein, cell cycle
Chain: A: PDB Molecule:zinc finger protein zpr1;
PDBTitle: crystal structure of tandem zpr1 domains
74c2v43A_
not modelled 17.9 18
PDB header:regulator
Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb;
PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli
75c3m6wA_
not modelled 17.8 21
PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine
76d1f8ab1
not modelled 17.4 44
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
77c2vcbA_
not modelled 17.4 45
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylglucosaminidase;
PDBTitle: family 89 glycoside hydrolase from clostridium perfringens2 in complex with pugnac
78c5uz9A_
not modelled 17.2 33
PDB header:immune system/rna
Chain: A: PDB Molecule:crispr-associated protein csy1;
PDBTitle: cryo em structure of anti-crisprs, acrf1 and acrf2, bound to type i-f2 crrna-guided crispr surveillance complex
79d2f21a1
not modelled 17.2 44
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
80c5fmgL_
not modelled 16.9 13
PDB header:hydrolase
Chain: L: PDB Molecule:proteasome subunit beta type;
PDBTitle: structure and function based design of plasmodium-selective proteasome2 inhibitors
81c4xwhA_
not modelled 16.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylglucosaminidase;
PDBTitle: crystal structure of the human n-acetyl-alpha-glucosaminidase
82c2n8tA_
not modelled 16.4 36
PDB header:ligase/peptide
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the rnedd4 ww2 domain-cx43ct peptide complex by2 nmr
83c4mymA_
not modelled 16.3 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase;
PDBTitle: crystal structure of a glyoxalase/ bleomycin resistance protein/2 dioxygenase from nocardioides
84c5vf3Z_
not modelled 16.2 44
PDB header:virus
Chain: Z: PDB Molecule:highly immunogenic outer capsid protein;
PDBTitle: bacteriophage t4 isometric capsid
85c6f8sD_
not modelled 16.1 18
PDB header:toxin
Chain: D: PDB Molecule:putative killer protein;
PDBTitle: toxin-antitoxin complex grata
86c5ydxA_
not modelled 15.9 56
PDB header:signaling protein
Chain: A: PDB Molecule:ww domain with ppxy motif;
PDBTitle: nmr structure of yap1-2 ww1 domain with lats1 ppxy motif complex
87c1wmvA_
not modelled 15.8 56
PDB header:oxidoreductase, apoptosis
Chain: A: PDB Molecule:ww domain containing oxidoreductase;
PDBTitle: solution structure of the second ww domain of wwox
88d1b1xa1
not modelled 15.8 13
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Transferrin
89d1ygsa_
not modelled 15.5 21
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:SMAD domain
90c5xyiN_
not modelled 15.5 20
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s13, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
91c6feuJ_
not modelled 15.5 26
PDB header:oxidoreductase
Chain: J: PDB Molecule:peroxiredoxin;
PDBTitle: prxq2, a 1-cys peroxiredoxin of the thermo-acidophilic archaeon2 sulfolobus islandicus
92c2l4jA_
not modelled 15.4 44
PDB header:transcription
Chain: A: PDB Molecule:yes-associated protein 2 (yap2);
PDBTitle: yap ww2
93d2bdea1
not modelled 15.3 10
Fold:HAD-like
Superfamily:HAD-like
Family:5' nucleotidase-like
94c3s8jB_
not modelled 15.2 33
PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:latex serine proteinase inhibitor;
PDBTitle: crystal structure of a papaya latex serine protease inhibitor (ppi) at2 2.6a resolution
95c3j20Q_
not modelled 15.2 27
PDB header:ribosome
Chain: Q: PDB Molecule:30s ribosomal protein s15p/s13e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
96d1ce2a1
not modelled 15.2 13
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Transferrin
97c5xmcA_
not modelled 15.0 27
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy;
PDBTitle: crystal structure of the auto-inhibited nedd4 family e3 ligase itch
98d1dd1a_
not modelled 14.7 26
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:SMAD domain
99d1eg1a_
not modelled 14.2 33
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Glycosyl hydrolase family 7 catalytic core

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite