Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2116_(lppK)_2376579_2377148
DateMon Aug 5 13:25:23 BST 2019
Unique Job IDba247782895a4edb
SequenceMRRNIRVTLG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.577 Y:19.777 Z:34.790
Model (left) based on template c2rsxA_
Top template information
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
Confidence and coverage
Confidence: 92.6% Coverage: 16%
31 residues ( 16% of your sequence) have been modelled with 92.6% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2rsxA_
92.6 19
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
2c3k7cC_
86.8 9
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
3c3dukD_
79.5 17
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
4d3blza1
77.0 20
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
5c3robC_
75.3 10
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
6c3fkaD_
73.3 14
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
7c4hzbE_
72.8 14
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
8c4ovmE_
68.8 7
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
9c4i4kB_
68.7 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
10c4lehA_
65.5 4
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
11d3ebya1
65.3 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
12d3cu3a1
62.0 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
13d2owpa1
61.3 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
14d3b8la1
57.9 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
15d3ef8a1
55.2 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
16c3bb9D_
53.5 8
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
17c4gb5A_
51.6 46
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
18c3a76B_
51.0 16
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
19c4iffC_
51.0 27
PDB header:cell cycle
Chain: C: PDB Molecule:fusion of phage phi29 gp7 protein and cell division protein
PDBTitle: structural organization of ftsb, a transmembrane protein of the2 bacterial divisome
20d3bb9a1
50.4 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
21c1nohB_
not modelled 49.8 27
PDB header:viral protein
Chain: B: PDB Molecule:head morphogenesis protein;
PDBTitle: the structure of bacteriophage phi29 scaffolding protein2 gp7 after prohead assembly
22d2chca1
not modelled 48.7 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
23d2rgqa1
not modelled 48.5 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
24c5ig4A_
not modelled 45.5 12
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
25d3eipa_
not modelled 45.2 22
Fold:FKBP-like
Superfamily:Colicin E3 immunity protein
Family:Colicin E3 immunity protein
26c3ub1C_
not modelled 42.5 10
PDB header:transport protein
Chain: C: PDB Molecule:orf13-like protein;
PDBTitle: ntf2 like protein involved in plasmid conjugation
27d2rcda1
not modelled 39.8 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
28d2rfra1
not modelled 39.8 29
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
29c6bjuD_
not modelled 39.1 10
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
30c3gwrA_
not modelled 39.0 10
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
31d3b7ca1
not modelled 37.5 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
32d1hkxa_
not modelled 35.4 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
33c3hx8A_
not modelled 29.0 13
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
34d1ulib_
not modelled 28.9 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
35c5lfiA_
not modelled 28.9 12
PDB header:immune system
Chain: A: PDB Molecule:lactococcin-a immunity protein;
PDBTitle: lactococcin a immunity protein
36d1xdpa1
not modelled 27.2 26
Fold:Spectrin repeat-like
Superfamily:PPK N-terminal domain-like
Family:PPK N-terminal domain-like
37d3e99a1
not modelled 26.9 0
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
38d2o8ra1
not modelled 26.0 26
Fold:Spectrin repeat-like
Superfamily:PPK N-terminal domain-like
Family:PPK N-terminal domain-like
39c3mtuE_
not modelled 25.7 30
PDB header:contractile protein
Chain: E: PDB Molecule:capsid assembly scaffolding protein,tropomyosin alpha-1
PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle
40d3d9ra1
not modelled 25.5 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
41c3f7sA_
not modelled 24.6 7
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
42d2ux0a1
not modelled 23.7 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
43d1idpa_
not modelled 23.6 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
44c3fsdA_
not modelled 22.5 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution
45c3kspA_
not modelled 21.6 20
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
46d3ejva1
not modelled 20.5 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
47c3ke7A_
not modelled 19.5 5
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
48c3gzrA_
not modelled 19.5 8
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
49c2gbxF_
not modelled 19.0 4
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
50c5d9rA_
not modelled 18.9 33
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
51c3h51A_
not modelled 18.2 9
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
52d3stda_
not modelled 17.4 6
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
53c5wlqA_
not modelled 17.0 27
PDB header:motor protein
Chain: A: PDB Molecule:capsid assembly scaffolding protein,myosin-7,microtubule-
PDBTitle: crystal structure of amino acids 1677-1755 of human beta cardiac2 myosin fused to gp7 and eb1
54c5uwaB_
not modelled 15.8 20
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
55c1e0tD_
not modelled 15.0 26
PDB header:phosphotransferase
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: r292d mutant of e. coli pyruvate kinase
56c5hsbA_
not modelled 14.3 13
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase;
PDBTitle: andes virus endonuclease
57c4qpoB_
not modelled 14.3 60
PDB header:transcription
Chain: B: PDB Molecule:relaxosome protein tram;
PDBTitle: mechanistic basis of plasmid-specific dna binding of the f plasmid2 regulatory protein, tram
58d3cnxa1
not modelled 14.2 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
59d1e0ta2
not modelled 14.0 26
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
60c4fczB_
not modelled 13.2 18
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
61c4c1oA_
not modelled 13.2 44
PDB header:hydrolase
Chain: A: PDB Molecule:beta-xylosidase;
PDBTitle: geobacillus thermoglucosidasius gh family 52 xylosidase
62d1bh9a_
not modelled 12.2 22
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
63c5u9oD_
not modelled 11.9 8
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
64c2jq5A_
not modelled 11.6 9
PDB header:structural genomics
Chain: A: PDB Molecule:sec-c motif;
PDBTitle: solution structure of rpa3114, a sec-c motif containing protein from2 rhodopseudomonas palustris; northeast structural genomics consortium3 target rpt5 / ontario center for structural proteomics target rp3097
65d2r4ia1
not modelled 11.5 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
66c5n02B_
not modelled 11.0 33
PDB header:lyase
Chain: B: PDB Molecule:glutaconate coa-transferase family, subunit b;
PDBTitle: crystal structure of the decarboxylase aiba/aibb c56s variant
67d1dp3a_
not modelled 10.4 50
Fold:IHF-like DNA-binding proteins
Superfamily:IHF-like DNA-binding proteins
Family:DNA-binding domain (fragment?) of the TraM protein
68d2f86b1
not modelled 9.5 6
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
69c2n5dA_
not modelled 9.0 27
PDB header:protein binding
Chain: A: PDB Molecule:fusion protein of two pks domains;
PDBTitle: nmr structure of pks domains
70c3omyB_
not modelled 9.0 50
PDB header:dna binding protein
Chain: B: PDB Molecule:protein tram;
PDBTitle: crystal structure of the ped208 tram n-terminal domain
71d2gqba1
not modelled 8.8 7
Fold:RPA2825-like
Superfamily:RPA2825-like
Family:RPA2825-like
72c5ig5E_
not modelled 8.5 14
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
73c2xgyA_
not modelled 8.3 20
PDB header:viral protein/isomerase
Chain: A: PDB Molecule:relik capsid n-terminal domain;
PDBTitle: complex of rabbit endogenous lentivirus (relik)capsid with2 cyclophilin a
74c6mzlS_
not modelled 7.6 23
PDB header:transcription
Chain: S: PDB Molecule:transcription initiation factor tfiid subunit 13;
PDBTitle: human tfiid canonical state
75d1jkea_
not modelled 7.4 27
Fold:DTD-like
Superfamily:DTD-like
Family:DTD-like
76c2ol5B_
not modelled 7.4 18
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
77d1vqqa1
not modelled 7.4 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
78c5xlmB_
not modelled 7.3 14
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pkni;
PDBTitle: monomer form of m.tuberculosis pkni sensor domain
79d1gp6a_
not modelled 7.3 12
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Penicillin synthase-like
80d1j7ga_
not modelled 7.2 18
Fold:DTD-like
Superfamily:DTD-like
Family:DTD-like
81c3l6tB_
not modelled 7.0 19
PDB header:hydrolase
Chain: B: PDB Molecule:mobilization protein trai;
PDBTitle: crystal structure of an n-terminal mutant of the plasmid pcu1 trai2 relaxase domain
82d2fp7b1
not modelled 6.6 30
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
83c2mdaB_
not modelled 6.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:tyrosine 3-monooxygenase;
PDBTitle: the solution structure of the regulatory domain of tyrosine2 hydroxylase
84c6rdvP_
not modelled 5.9 19
PDB header:proton transport
Chain: P: PDB Molecule:mitochondrial atp synthase subunit oscp;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1e,2 focussed refinement of f1 head and rotor
85d1e8qa_
not modelled 5.8 27
Fold:Cellulose docking domain, dockering
Superfamily:Cellulose docking domain, dockering
Family:Cellulose docking domain, dockering
86d2auna1
not modelled 5.6 13
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LD-carboxypeptidase A C-terminal domain-like
Family:LD-carboxypeptidase A C-terminal domain-like
87c4kdwA_
not modelled 5.5 16
PDB header:cell adhesion
Chain: A: PDB Molecule:antifreeze protein;
PDBTitle: crystal structure of a bacterial immunoglobulin-like domain from the2 m. primoryensis ice-binding adhesin
88d1lfoa_
not modelled 5.5 33
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
89c3d0fA_
not modelled 5.4 40
PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca;
PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718
90c6of9G_
not modelled 5.4 14
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
91c3zmnA_
not modelled 5.4 17
PDB header:viral protein
Chain: A: PDB Molecule:vp17;
PDBTitle: vp17, a capsid protein of bacteriophage p23-77
92c3onjA_
not modelled 5.3 19
PDB header:protein transport
Chain: A: PDB Molecule:t-snare vti1;
PDBTitle: crystal structure of yeast vti1p_habc domain
93d2ftba1
not modelled 5.2 45
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like

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