Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2119_(-)_2378394_2379230
DateMon Aug 5 13:25:23 BST 2019
Unique Job ID295bf79d52057816
SequenceMADQPDPPTP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.848 Y:55.021 Z:54.612
Model (left) based on template c3u44B_
Top template information
PDB header:hydrolase/dna
Chain: B: PDB Molecule:atp-dependent helicase/deoxyribonuclease subunit b;
PDBTitle: crystal structure of addab-dna complex
Confidence and coverage
Confidence:100.0% Coverage: 92%
257 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3u44B_



100.0 19
PDB header:hydrolase/dna
Chain: B: PDB Molecule:atp-dependent helicase/deoxyribonuclease subunit b;
PDBTitle: crystal structure of addab-dna complex
2c4ic1D_



99.8 19
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of sso0001
3c5eaxB_



99.8 14
PDB header:hydrolase/dna
Chain: B: PDB Molecule:dna replication atp-dependent helicase/nuclease dna2;
PDBTitle: crystal structure of dna2 in complex with an ssdna
4c4onbA_



99.8 27
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated exonuclease, cas4 family;
PDBTitle: crystal structure of crispr-associated exonuclease (cas4 family) from2 pyrobaculum calidifontis jcm 11548
5c3l0aA_



99.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:putative exonuclease;
PDBTitle: crystal structure of putative exonuclease (rer070207002219) from2 eubacterium rectale at 2.19 a resolution
6c3h4rA_



99.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease 8;
PDBTitle: crystal structure of e. coli rece exonuclease
7c3u4qA_



99.5 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:atp-dependent helicase/nuclease subunit a;
PDBTitle: structure of addab-dna complex at 2.8 angstroms
8c5zyuA_



99.2 17
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:mitochondrial genome maintenance exonuclease 1;
PDBTitle: the crytal struture of humanmgme1 with single strand dna2
9c1w36F_



99.0 16
PDB header:recombination
Chain: F: PDB Molecule:exodeoxyribonuclease v gamma chain;
PDBTitle: recbcd:dna complex
10c1w36E_



98.8 16
PDB header:recombination
Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain;
PDBTitle: recbcd:dna complex
11d1w36b3



98.4 18
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Exodeoxyribonuclease V beta chain (RecB), C-terminal domain
12c5gkeB_



89.8 22
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endonuclease endoms;
PDBTitle: structure of endoms-dsdna1 complex
13c2vldA_



84.8 23
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease nucs;
PDBTitle: crystal structure of a repair endonuclease from pyrococcus abyssi
14d1rrqa1



80.0 30
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
15d1w36c3



72.4 15
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
16d1kg2a_



71.5 30
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
17c4unfA_



64.1 20
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-1;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-1
18c1rrqA_



55.1 31
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
19d2abka_



54.6 12
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
20d1orna_



49.6 23
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
21d1keaa_



not modelled 47.4 13
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
22c3n5nX_



not modelled 47.3 27
PDB header:hydrolase
Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase;
PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue
23c4uobA_



not modelled 39.4 30
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-3;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-3
24c1klrA_



not modelled 35.5 22
PDB header:transcription
Chain: A: PDB Molecule:zinc finger y-chromosomal protein;
PDBTitle: nmr structure of the zfy-6t[y10f] zinc finger
25d1klra_



not modelled 35.5 22
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
26c6hz9N_



not modelled 33.6 14
PDB header:dna binding protein
Chain: N: PDB Molecule:protein mcrc;
PDBTitle: structure of mcrbc without dna binding domains (class 5)
27d1uzka3



not modelled 32.9 30
Fold:TB module/8-cys domain
Superfamily:TB module/8-cys domain
Family:TB module/8-cys domain
28c5znfA_



not modelled 32.6 22
PDB header:zinc finger dna binding domain
Chain: A: PDB Molecule:zinc finger;
PDBTitle: alternating zinc fingers in the human male associated2 protein zfy: 2d nmr structure of an even finger and3 implications for "jumping-linker" dna recognition
29c1klsA_



not modelled 30.8 22
PDB header:transcription
Chain: A: PDB Molecule:zinc finger y-chromosomal protein;
PDBTitle: nmr structure of the zfy-6t[y10l] zinc finger
30c7znfA_



not modelled 28.2 22
PDB header:zinc finger dna binding domain
Chain: A: PDB Molecule:zinc finger;
PDBTitle: alternating zinc fingers in the human male associated2 protein zfy: 2d nmr structure of an even finger and3 implications for "jumping-linker" dna recognition
31d7znfa_



not modelled 28.2 22
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
32d2h28a1



not modelled 24.8 16
Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
33c3hkzP_



not modelled 24.7 14
PDB header:transferase
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
34d2ea9a1



not modelled 24.2 27
Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
35d1js2a_



not modelled 23.9 31
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
36d2inwa1



not modelled 23.3 16
Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
37c3ks8D_



not modelled 22.8 14
PDB header:viral protein/rna
Chain: D: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of reston ebolavirus vp35 rna binding domain in2 complex with 18bp dsrna
38c4r33A_



not modelled 21.0 20
PDB header:lyase
Chain: A: PDB Molecule:nosl;
PDBTitle: x-ray structure of the tryptophan lyase nosl with tryptophan and s-2 adenosyl-l-homocysteine bound
39d1b0ya_



not modelled 20.9 31
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
40c6c8vA_



not modelled 20.7 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme pqq synthesis protein e;
PDBTitle: x-ray structure of pqqe from methylobacterium extorquens
41c4gh9A_



not modelled 20.6 6
PDB header:viral protein,rna binding protein
Chain: A: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of marburg virus vp35 rna binding domain
42c6f40P_



not modelled 19.8 5
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase iii subunit rpc6;
PDBTitle: rna polymerase iii open complex
43d1x5wa2



not modelled 17.6 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
44c2liyA_



not modelled 16.9 24
PDB header:hormone
Chain: A: PDB Molecule:epidermal patterning factor-like protein 9;
PDBTitle: plant peptide hormone regulating stomatal density
45d1apja_



not modelled 16.1 29
Fold:TB module/8-cys domain
Superfamily:TB module/8-cys domain
Family:TB module/8-cys domain
46c2elpA_



not modelled 16.1 29
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406
47c3fkeB_



not modelled 16.0 17
PDB header:rna binding protein
Chain: B: PDB Molecule:polymerase cofactor vp35;
PDBTitle: structure of the ebola vp35 interferon inhibitory domain
48c6dkuA_



not modelled 15.0 9
PDB header:unknown function
Chain: A: PDB Molecule:vp35;
PDBTitle: crystal structure of myotis vp35 mutant of interferon inhibitory2 domain
49c5fj9P_



not modelled 14.3 13
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase iii subunit rpc6;
PDBTitle: cryo-em structure of yeast apo rna polymerase iii at 4.6 a
50d2dmda1



not modelled 13.8 20
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
51d2dmda3



not modelled 13.7 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
52d3hipa_



not modelled 12.8 28
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
53d1danl3



not modelled 12.7 29
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
54d2c4fl3



not modelled 12.5 29
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
55c5wggA_



not modelled 11.0 36
PDB header:peptide binding protein
Chain: A: PDB Molecule:radical sam domain protein;
PDBTitle: structural insights into thioether bond formation in the biosynthesis2 of sactipeptides
56d1iuaa_



not modelled 10.8 31
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
57d3fapb_



not modelled 10.8 17
Fold:Four-helical up-and-down bundle
Superfamily:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
Family:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
58d1hlqa_



not modelled 9.9 34
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
59d1omca_



not modelled 9.6 40
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Conotoxin
60c1ttlA_



not modelled 9.6 40
PDB header:toxin
Chain: A: PDB Molecule:omega-conotoxin gvia;
PDBTitle: omega-conotoxin gvia, a n-type calcium channel blocker
61c1omcA_



not modelled 9.6 40
PDB header:presynaptic neurotoxin
Chain: A: PDB Molecule:omega-conotoxin gvia;
PDBTitle: solution structure of omega-conotoxin gvia using 2-d nmr spectroscopy2 and relaxation matrix analysis
62c2ccoA_



not modelled 9.6 40
PDB header:toxin
Chain: A: PDB Molecule:omega-conotoxin gvia;
PDBTitle: structure of the calcium channel blocker omega conotoxin2 gvia, nmr, 20 structures
63c3h31A_



not modelled 8.6 24
PDB header:electron transport
Chain: A: PDB Molecule:high potential iron-sulfur protein;
PDBTitle: structure of rhodothermus marinus hipip at 1.0 a resolution
64c4k39A_



not modelled 8.5 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic sulfatase-maturating enzyme;
PDBTitle: native ansmecpe with bound adomet and cp18cys peptide
65d1ksqa_



not modelled 8.0 24
Fold:TB module/8-cys domain
Superfamily:TB module/8-cys domain
Family:TB module/8-cys domain
66c4rtbA_



not modelled 7.9 11
PDB header:lyase
Chain: A: PDB Molecule:hydg protein;
PDBTitle: x-ray structure of the fefe-hydrogenase maturase hydg from2 carboxydothermus hydrogenoformans
67d1u6pa_



not modelled 7.3 18
Fold:Retrovirus zinc finger-like domains
Superfamily:Retrovirus zinc finger-like domains
Family:Retrovirus zinc finger-like domains
68c1r30A_



not modelled 7.2 33
PDB header:transferase
Chain: A: PDB Molecule:biotin synthase;
PDBTitle: the crystal structure of biotin synthase, an s-adenosylmethionine-2 dependent radical enzyme
69d1r30a_



not modelled 7.2 33
Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Biotin synthase
70c4qbnA_



not modelled 7.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:nuclease;
PDBTitle: vrr_nuc domain
71c5oayA_



not modelled 6.9 31
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
72c1a6bB_



not modelled 6.7 18
PDB header:viral protein/dna
Chain: B: PDB Molecule:zinc finger protein ncp10;
PDBTitle: nmr structure of the complex between the zinc finger2 protein ncp10 of moloney murine leukemia virus and a3 sequence of the psi-packaging domain of hiv-1, 204 structures
73d2d5ba1



not modelled 6.7 11
Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
74c2m0dA_



not modelled 6.6 50
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 17;
PDBTitle: solution structure of miz-1 zinc finger 5
75c3cw19_



not modelled 6.4 60
PDB header:splicing
Chain: 9: PDB Molecule:u1 small nuclear ribonucleoprotein c;
PDBTitle: crystal structure of human spliceosomal u1 snrnp
76c2eluA_



not modelled 6.3 33
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 5th c2h2 zinc finger of human2 zinc finger protein 406
77c5v1tA_



not modelled 6.3 27
PDB header:metal binding protein
Chain: A: PDB Molecule:radical sam;
PDBTitle: crystal structure of streptococcus suis suib bound to precursor2 peptide suia
78d2yrka1



not modelled 6.3 18
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:HkH motif-containing C2H2 finger
79d1g72b_



not modelled 6.3 30
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Methanol dehydrogenase subunit
Family:Methanol dehydrogenase subunit
80d1rqga1



not modelled 6.1 15
Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
81d1w6sb_



not modelled 6.1 40
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Methanol dehydrogenase subunit
Family:Methanol dehydrogenase subunit
82d2ad6b1



not modelled 6.1 30
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Methanol dehydrogenase subunit
Family:Methanol dehydrogenase subunit
83c3t7vA_



not modelled 6.0 20
PDB header:transferase
Chain: A: PDB Molecule:methylornithine synthase pylb;
PDBTitle: crystal structure of methylornithine synthase (pylb)
84d2vrda1



not modelled 5.9 60
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:HkH motif-containing C2H2 finger
85c3hk4B_



not modelled 5.8 11
PDB header:lyase
Chain: B: PDB Molecule:mlr7391 protein;
PDBTitle: crystal structure of a putative snoal-like polyketide cyclase2 [carbohydrate phosphatase] (mlr7391) from mesorhizobium loti at 1.963 a resolution
86d1brza_



not modelled 5.8 50
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Plant defensins
87d1wjpa2



not modelled 5.6 27
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
88d1olta_



not modelled 5.5 27
Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Oxygen-independent coproporphyrinogen III oxidase HemN
89c5a8lZ_



not modelled 5.5 16
PDB header:translation
Chain: Z: PDB Molecule:nascent chain;
PDBTitle: human erf1 and the hcmv nascent peptide in the translation termination2 complex
90d1bboa2



not modelled 5.5 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
91c6c4zI_



not modelled 5.4 42
PDB header:de novo protein
Chain: I: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
92c6c4yM_



not modelled 5.4 42
PDB header:de novo protein
Chain: M: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
93c6c4yD_



not modelled 5.4 42
PDB header:de novo protein
Chain: D: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
94c6c4zR_



not modelled 5.4 42
PDB header:de novo protein
Chain: R: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
95c6c4zO_



not modelled 5.4 42
PDB header:de novo protein
Chain: O: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
96c6c4zF_



not modelled 5.4 42
PDB header:de novo protein
Chain: F: PDB Molecule:cross-alpha amyloid-like structure alphaamg - low
PDBTitle: cross-alpha amyloid-like structure alphaamg - low resolution
97c6c4yA_



not modelled 5.4 42
PDB header:de novo protein
Chain: A: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
98c6c4yF_



not modelled 5.4 42
PDB header:de novo protein
Chain: F: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg
99c6c4yP_



not modelled 5.4 42
PDB header:de novo protein
Chain: P: PDB Molecule:cross-alpha amyloid-like structure alphaamg;
PDBTitle: cross-alpha amyloid-like structure alphaamg

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Transmembrane helix prediction 

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