Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2122c_(hisE)_2380671_2380952
DateMon Aug 5 13:25:24 BST 2019
Unique Job ID59ad587bffbd7f5a
SequenceVQQSLAVKTF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.056 Y:34.833 Z:35.483
Model (left) based on template d1y6xa1
Top template information
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
Confidence and coverage
Confidence:100.0% Coverage: 94%
87 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1y6xa1
100.0 99
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
2d2a7wa1
100.0 28
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
3c2a7wF_
100.0 28
PDB header:hydrolase
Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7
4c1yvwD_
100.0 25
PDB header:hydrolase
Chain: D: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp2 pyrophosphohydrolase from bacillus cereus. nesgc target3 bcr13.
5d1yvwa1
100.0 25
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
6d1yxba1
100.0 52
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
7d1vmga_
98.1 23
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
8c2yxhB_
97.9 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mazg-related protein;
PDBTitle: crystal structure of mazg-related protein from thermotoga maritima
9c2q9lA_
97.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212)
10d2a3qa1
97.7 24
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
11c3crcB_
97.7 26
PDB header:hydrolase
Chain: B: PDB Molecule:protein mazg;
PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response
12d2gtad1
97.6 27
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
13c3obcB_
97.6 16
PDB header:hydrolase
Chain: B: PDB Molecule:pyrophosphatase;
PDBTitle: crystal structure of a pyrophosphatase (af1178) from archaeoglobus2 fulgidus at 1.80 a resolution
14c2q4pA_
97.6 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein rs21-c6;
PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898
15d2oiea1
97.4 25
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
16d2gtaa1
97.4 29
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
17c2yf3F_
94.6 33
PDB header:hydrolase
Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase;
PDBTitle: crystal structure of dr2231, the mazg-like protein from deinococcus2 radiodurans, complex with manganese
18c2rfpA_
69.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase;
PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution
19c2p06A_
31.1 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af_0060;
PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304
20d2p06a1
31.1 21
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:AF0060-like
21c4riqU_
not modelled 28.0 14
PDB header:transferase/protein binding
Chain: U: PDB Molecule:set1/ash2 histone methyltransferase complex subunit ash2;
PDBTitle: crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
22c4riqI_
not modelled 28.0 14
PDB header:transferase/protein binding
Chain: I: PDB Molecule:set1/ash2 histone methyltransferase complex subunit ash2;
PDBTitle: crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
23c4riqC_
not modelled 28.0 14
PDB header:transferase/protein binding
Chain: C: PDB Molecule:set1/ash2 histone methyltransferase complex subunit ash2;
PDBTitle: crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
24c4riqR_
not modelled 28.0 14
PDB header:transferase/protein binding
Chain: R: PDB Molecule:set1/ash2 histone methyltransferase complex subunit ash2;
PDBTitle: crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
25c4riqF_
not modelled 28.0 14
PDB header:transferase/protein binding
Chain: F: PDB Molecule:set1/ash2 histone methyltransferase complex subunit ash2;
PDBTitle: crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
26c4riqO_
not modelled 28.0 14
PDB header:transferase/protein binding
Chain: O: PDB Molecule:set1/ash2 histone methyltransferase complex subunit ash2;
PDBTitle: crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
27c4riqL_
not modelled 28.0 14
PDB header:transferase/protein binding
Chain: L: PDB Molecule:set1/ash2 histone methyltransferase complex subunit ash2;
PDBTitle: crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
28c4riqX_
not modelled 28.0 14
PDB header:transferase/protein binding
Chain: X: PDB Molecule:set1/ash2 histone methyltransferase complex subunit ash2;
PDBTitle: crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
29c6dmpA_
not modelled 21.4 41
PDB header:de novo protein
Chain: A: PDB Molecule:designed orthogonal protein dhd13_xaaa_a;
PDBTitle: de novo design of a protein heterodimer with specificity mediated by2 hydrogen bond networks
30c2a2oG_
not modelled 20.1 24
PDB header:transcription
Chain: G: PDB Molecule:hypothetical protein bt3146;
PDBTitle: crystal structure of a putativetena family transcriptional regulator2 (bt_3146) from bacteroides thetaiotaomicron vpi-5482 at 2.16 a3 resolution
31c4m3lC_
not modelled 19.7 21
PDB header:ligase
Chain: C: PDB Molecule:e3 ubiquitin-protein ligase trim63;
PDBTitle: crystal structure of the coiled coil domain of murf1
32c2v75A_
not modelled 17.7 33
PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein nab2;
PDBTitle: n-terminal domain of nab2
33c6in7B_
not modelled 17.1 15
PDB header:transcription
Chain: B: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: crystal structure of algu in complex with muca(cyto)
34d2a2ma1
not modelled 17.0 24
Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:TENA/THI-4
35d1w1we_
not modelled 16.7 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rad21/Rec8-like
36c1w1wF_
not modelled 16.7 19
PDB header:cell adhesion
Chain: F: PDB Molecule:sister chromatid cohesion protein 1;
PDBTitle: sc smc1hd:scc1-c complex, atpgs
37c3hjlA_
not modelled 15.7 13
PDB header:proton transport
Chain: A: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: the structure of full-length flig from aquifex aeolicus
38c3pl4A_
not modelled 14.2 14
PDB header:motor protein
Chain: A: PDB Molecule:flagellar motor switch protein;
PDBTitle: crystal structure of flig (residue 116-343) from h. pylori
39c2z1dA_
not modelled 14.2 7
PDB header:metal binding protein
Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd;
PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis
40c2l27B_
not modelled 14.1 14
PDB header:membrane protein, peptide binding protei
Chain: B: PDB Molecule:peptide agonist;
PDBTitle: nmr structure of the ecd1 of crf-r1 in complex with a peptide agonist
41d2zjrk1
not modelled 13.5 18
Fold:Prokaryotic ribosomal protein L17
Superfamily:Prokaryotic ribosomal protein L17
Family:Prokaryotic ribosomal protein L17
42c2rmfA_
not modelled 13.2 11
PDB header:hormone
Chain: A: PDB Molecule:urocortin;
PDBTitle: human urocortin 1
43c4uoiB_
not modelled 12.9 20
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: unexpected structure for the n-terminal domain of hepatitis c virus2 envelope glycoprotein e1
44c6huxA_
not modelled 12.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:h(2)-forming methylenetetrahydromethanopterin
PDBTitle: hmdii from methanocaldococcus jannaschii reconstitued with fe-2 guanylylpyridinol (fegp) cofactor and co-crystallized with methenyl-3 tetrahydromethanopterin at 2.5 a resolution
45d1ov9a_
not modelled 12.0 10
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
46c6mbdC_
not modelled 11.5 26
PDB header:apoptosis
Chain: C: PDB Molecule:dm1;
PDBTitle: human mcl-1 in complex with the designed peptide dm1
47c6mbdD_
not modelled 11.5 26
PDB header:apoptosis
Chain: D: PDB Molecule:dm1;
PDBTitle: human mcl-1 in complex with the designed peptide dm1
48d1bpoa1
not modelled 11.1 26
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Clathrin heavy-chain linker domain
49c2ip6A_
not modelled 10.8 18
PDB header:antimicrobial protein
Chain: A: PDB Molecule:papb;
PDBTitle: crystal structure of pedb
50c4yddF_
not modelled 10.7 8
PDB header:oxidoreductase
Chain: F: PDB Molecule:dmso reductase family type ii enzyme, iron-sulfur subunit;
PDBTitle: crystal structure of the perchlorate reductase pcrab from azospira2 suillum ps
51c6nd4I_
not modelled 10.0 16
PDB header:ribosome
Chain: I: PDB Molecule:utp8;
PDBTitle: conformational switches control early maturation of the eukaryotic2 small ribosomal subunit
52c5o60O_
not modelled 10.0 32
PDB header:ribosome
Chain: O: PDB Molecule:50s ribosomal protein l17;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
53c4uqwA_
not modelled 9.7 17
PDB header:chaperone
Chain: A: PDB Molecule:protein clpv1;
PDBTitle: coevolution of the atpase clpv, the tssb-tssc sheath and2 the accessory hsie protein distinguishes two type vi3 secretion classes
54c4yt2A_
not modelled 9.5 18
PDB header:metal binding protein
Chain: A: PDB Molecule:h(2)-forming methylenetetrahydromethanopterin
PDBTitle: hmd ii from methanocaldococcus jannaschii
55c5ipmF_
not modelled 9.5 24
PDB header:transcription, transferase/dna/rna
Chain: F: PDB Molecule:rna polymerase sigma factor rpos;
PDBTitle: sigmas-transcription initiation complex with 4-nt nascent rna
56c6c03A_
not modelled 9.2 12
PDB header:transcription
Chain: A: PDB Molecule:putative rna polymerase ecf-subfamily sigma factor;
PDBTitle: the crystal structure streptomyces venezuelae rsbn-bldn complex
57c2rkkA_
not modelled 9.1 9
PDB header:lipid transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein vta1;
PDBTitle: crystal structure of s.cerevisiae vta1 n-terminal domain
58c3j3vN_
not modelled 9.0 23
PDB header:ribosome
Chain: N: PDB Molecule:50s ribosomal protein l17;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
59c4xngC_
not modelled 8.8 18
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein mg218.1;
PDBTitle: central domain of mycoplasma genitalium terminal organelle protein2 mg491
60c5tgyA_
not modelled 8.1 26
PDB header:unknown function
Chain: A: PDB Molecule:ps1;
PDBTitle: nmr structure of holo-ps1
61c2lo0B_
not modelled 7.9 14
PDB header:protein binding
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of the get5 carboxyl domain from a. fumigatus
62c5fztB_
not modelled 7.5 33
PDB header:structural protein
Chain: B: PDB Molecule:rho gtpase-activating protein 7;
PDBTitle: the crystal structure of r7r8 in complex with a dlc12 fragment.
63c2ltuA_
not modelled 7.5 16
PDB header:transferase
Chain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-2;
PDBTitle: solution structure of autoinhibitory domain of human amp-activated2 protein kinase catalytic subunit
64c5cd6C_
not modelled 7.1 20
PDB header:unknown function
Chain: C: PDB Molecule:tpr-domain containing protein;
PDBTitle: crystal structure of a tpr-domain containing protein (bdi_1685) from2 parabacteroides distasonis atcc 8503 at 2.26 a resolution
65d1ryqa_
not modelled 6.8 8
Fold:Rubredoxin-like
Superfamily:RNA polymerase subunits
Family:RpoE2-like
66c4wt3A_
not modelled 6.5 40
PDB header:chaperone
Chain: A: PDB Molecule:rubisco accumulation factor 1, isoform 2;
PDBTitle: the n-terminal domain of rubisco accumulation factor 1 from2 arabidopsis thaliana
67d1hiob_
not modelled 6.3 12
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
68c3zriA_
not modelled 6.2 18
PDB header:chaperone
Chain: A: PDB Molecule:clpb protein;
PDBTitle: n-domain of clpv from vibrio cholerae
69d1p3mh_
not modelled 6.1 14
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
70c5wurB_
not modelled 6.1 10
PDB header:metal binding protein
Chain: B: PDB Molecule:ecf rna polymerase sigma factor sigw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, an2 oxdized form
71c5x6cE_
not modelled 6.1 7
PDB header:rna binding protein
Chain: E: PDB Molecule:uncharacterized protein mj1481;
PDBTitle: crystal structure of seprs-sepcyse from methanocaldococcus jannaschii
72c5x6cF_
not modelled 6.1 7
PDB header:rna binding protein
Chain: F: PDB Molecule:uncharacterized protein mj1481;
PDBTitle: crystal structure of seprs-sepcyse from methanocaldococcus jannaschii
73d1vp7a_
not modelled 6.0 12
Fold:Spectrin repeat-like
Superfamily:XseB-like
Family:XseB-like
74c2q00B_
not modelled 6.0 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:orf c02003 protein;
PDBTitle: crystal structure of the p95883_sulso protein from sulfolobus2 solfataricus. nesg target ssr10.
75c4hh5A_
not modelled 5.9 16
PDB header:protein binding
Chain: A: PDB Molecule:putative type vi secretion protein;
PDBTitle: n-terminal domain (1-163) of clpv1 atpase from e.coli eaec sci1 t6ss.
76c5b52B_
not modelled 5.7 44
PDB header:transcription
Chain: B: PDB Molecule:h-ns family protein mvat;
PDBTitle: crystal structure of the n-terminal domain of h-ns family protein turb
77c2kciA_
not modelled 5.7 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative acyl carrier protein;
PDBTitle: solution nmr structure of gmet_2339 from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr141
78c5w82E_
not modelled 5.6 29
PDB header:viral protein
Chain: E: PDB Molecule:protein delta;
PDBTitle: crystal structure of orsay virus delta protein n-terminal fragment (aa2 1-101)
79c2i7uA_
not modelled 5.5 48
PDB header:de novo protein/ligand binding protein
Chain: A: PDB Molecule:four-alpha-helix bundle;
PDBTitle: structural and dynamical analysis of a four-alpha-helix2 bundle with designed anesthetic binding pockets
80c5lnfA_
not modelled 5.5 6
PDB header:chaperone
Chain: A: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: solution nmr structure of farnesylated pex19, c-terminal domain
81c2jeeA_
not modelled 5.4 27
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein zapb;
PDBTitle: xray structure of e. coli yiiu
82c4z6yD_
not modelled 5.1 53
PDB header:hydrolase inhibitor/protein binding
Chain: D: PDB Molecule:hamartin;
PDBTitle: structure of the tbc1d7-tsc1 complex
83c4z6yC_
not modelled 5.1 53
PDB header:hydrolase inhibitor/protein binding
Chain: C: PDB Molecule:hamartin;
PDBTitle: structure of the tbc1d7-tsc1 complex
84c4z6yF_
not modelled 5.0 53
PDB header:hydrolase inhibitor/protein binding
Chain: F: PDB Molecule:hamartin;
PDBTitle: structure of the tbc1d7-tsc1 complex
85d2qamn1
not modelled 5.0 41
Fold:Prokaryotic ribosomal protein L17
Superfamily:Prokaryotic ribosomal protein L17
Family:Prokaryotic ribosomal protein L17

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