Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2127_(ansP1)_2388624_2390093
DateMon Aug 5 13:25:24 BST 2019
Unique Job ID61eacad64defc057
SequenceLSAASQRVGA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:67.376 Y:59.064 Z:59.634
Model (left) based on template c4djiA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
Confidence and coverage
Confidence:100.0% Coverage: 94%
458 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4djiA_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
2c5oqtA_
100.0 19
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
3c6f2wA_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:putative amino acid/polyamine transport protein;
PDBTitle: bacterial asc transporter crystal structure in open to in conformation
4c3giaA_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
5c6irtB_
100.0 18
PDB header:membrane protein
Chain: B: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: human lat1-4f2hc complex bound with bch
6c6nplA_
100.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:solute carrier family 12 (sodium/potassium/chloride
PDBTitle: cryo-em structure of nkcc1
7c3lrcC_
100.0 18
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
8c6jmqA_
100.0 19
PDB header:membrane protein/immune system
Chain: A: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: lat1-cd98hc complex bound to mem-108 fab
9c6csfC_
100.0 13
PDB header:membrane protein
Chain: C: PDB Molecule:sodium/alanine symporter agcs;
PDBTitle: crystal structure of sodium/alanine symporter agcs with d-alanine2 bound
10c2jlnA_
100.0 11
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
11c6c08F_
99.7 9
PDB header:membrane protein
Chain: F: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
12c5nvaA_
99.6 11
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
13c2xq2A_
99.5 10
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
14c6c08C_
99.3 10
PDB header:membrane protein
Chain: C: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
15c3dh4A_
99.3 9
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
16c5i6xA_
99.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:sodium-dependent serotonin transporter;
PDBTitle: x-ray structure of the ts3 human serotonin transporter complexed with2 paroxetine at the central site
17c5m87A_
98.8 11
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of eremococcus coleocola manganese transporter
18c4wgwA_
98.8 11
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: staphylococcus capitis divalent metal ion transporter (dmt) in complex2 with manganese
19c4wgvC_
98.8 11
PDB header:transport protein
Chain: C: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
20c4m48A_
98.6 12
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: x-ray structure of dopamine transporter elucidates antidepressant2 mechanism
21d2a65a1
not modelled 98.2 13
Fold:SNF-like
Superfamily:SNF-like
Family:SNF-like
22c2w8aC_
not modelled 97.9 12
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
23c4us3A_
not modelled 97.8 12
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: crystal structure of the bacterial nss member mhst in an2 occluded inward-facing state
24c4ainB_
not modelled 97.2 10
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
25c3hfxA_
not modelled 91.5 9
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
26c5xpdA_
not modelled 83.6 11
PDB header:transport protein
Chain: A: PDB Molecule:sugar transporter;
PDBTitle: sugar transporter of atsweet13 in inward-facing state with a substrate2 analog
27c6nbxG_
not modelled 79.0 10
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
28c4n7wA_
not modelled 66.2 11
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
29c5kteA_
not modelled 65.9 15
PDB header:transport protein/immune system
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of deinococcus radiodurans mnth, an nramp-family2 transition metal transporter
30c6hwhX_
not modelled 18.4 15
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
31c2dhzA_
not modelled 17.6 14
PDB header:signaling protein
Chain: A: PDB Molecule:rap guanine nucleotide exchange factor (gef)-
PDBTitle: solution structure of the ra domain in the human link2 guanine nucleotide exchange factor ii (link-gefii)
32c5b52B_
not modelled 16.1 19
PDB header:transcription
Chain: B: PDB Molecule:h-ns family protein mvat;
PDBTitle: crystal structure of the n-terminal domain of h-ns family protein turb
33c3aygA_
not modelled 14.4 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide reductase;
PDBTitle: crystal structure of nitric oxide reductase complex with hqno
34c2l1nA_
not modelled 14.1 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the protein yp_399305.1
35c4x5mB_
not modelled 10.4 8
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of semisweet in the inward-open conformation
36c6eznH_
not modelled 9.3 12
PDB header:membrane protein
Chain: H: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
37c3j1zP_
not modelled 8.1 8
PDB header:metal transport
Chain: P: PDB Molecule:cation efflux family protein;
PDBTitle: inward-facing conformation of the zinc transporter yiip revealed by2 cryo-electron microscopy
38c2bbjB_
not modelled 7.8 8
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
39d1fftb2
not modelled 7.5 6
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
40c2m67A_
not modelled 7.4 11
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
41c2kncB_
not modelled 7.2 9
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
42c5i6cB_
not modelled 7.0 14
PDB header:transport protein
Chain: B: PDB Molecule:uric acid-xanthine permease;
PDBTitle: the structure of the eukaryotic purine/h+ symporter, uapa, in complex2 with xanthine
43c3h5fB_
not modelled 6.8 21
PDB header:de novo protein
Chain: B: PDB Molecule:coil ser l16l-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
44c3h5gA_
not modelled 6.8 21
PDB header:de novo protein
Chain: A: PDB Molecule:coil ser l16d-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
45c5u9tA_
not modelled 6.8 21
PDB header:de novo protein
Chain: A: PDB Molecule:zn(ii)cl(coilser l16(dcy))3 2-;
PDBTitle: the tris-thiolate zn(ii)s3cl binding site engineered by d-cysteine2 ligands in de novo three-stranded coiled coil environment
46c5u9uB_
not modelled 6.8 21
PDB header:de novo protein
Chain: B: PDB Molecule:apo-(coilser l16(dcy))3;
PDBTitle: de novo three-stranded coiled coil peptide containing a tris-thiolate2 site engineered by d-cysteine ligands
47c3h5gB_
not modelled 6.8 21
PDB header:de novo protein
Chain: B: PDB Molecule:coil ser l16d-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
48c5u9uA_
not modelled 6.8 21
PDB header:de novo protein
Chain: A: PDB Molecule:apo-(coilser l16(dcy))3;
PDBTitle: de novo three-stranded coiled coil peptide containing a tris-thiolate2 site engineered by d-cysteine ligands
49c3h5gC_
not modelled 6.8 21
PDB header:de novo protein
Chain: C: PDB Molecule:coil ser l16d-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
50c5u9uC_
not modelled 6.8 21
PDB header:de novo protein
Chain: C: PDB Molecule:apo-(coilser l16(dcy))3;
PDBTitle: de novo three-stranded coiled coil peptide containing a tris-thiolate2 site engineered by d-cysteine ligands
51c3h5fA_
not modelled 6.8 21
PDB header:de novo protein
Chain: A: PDB Molecule:coil ser l16l-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
52c3h5fC_
not modelled 6.8 21
PDB header:de novo protein
Chain: C: PDB Molecule:coil ser l16l-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
53c5u9tC_
not modelled 6.8 21
PDB header:de novo protein
Chain: C: PDB Molecule:zn(ii)cl(coilser l16(dcy))3 2-;
PDBTitle: the tris-thiolate zn(ii)s3cl binding site engineered by d-cysteine2 ligands in de novo three-stranded coiled coil environment
54c5u9tB_
not modelled 6.8 21
PDB header:de novo protein
Chain: B: PDB Molecule:zn(ii)cl(coilser l16(dcy))3 2-;
PDBTitle: the tris-thiolate zn(ii)s3cl binding site engineered by d-cysteine2 ligands in de novo three-stranded coiled coil environment
55c6nd1E_
not modelled 6.6 15
PDB header:protein transport
Chain: E: PDB Molecule:translocation protein sec66;
PDBTitle: cryoem structure of the sec complex from yeast
56c5oonA_
not modelled 6.5 12
PDB header:membrane protein
Chain: A: PDB Molecule:undecaprenyl-diphosphatase;
PDBTitle: structure of undecaprenyl-pyrophosphate phosphatase, baca
57c4kppA_
not modelled 6.4 10
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
58c3bd1B_
not modelled 6.4 14
PDB header:transcription
Chain: B: PDB Molecule:cro protein;
PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1
59c3ixzA_
not modelled 6.2 7
PDB header:hydrolase
Chain: A: PDB Molecule:potassium-transporting atpase alpha;
PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
60c2m7eA_
not modelled 6.0 15
PDB header:calmodulin-binding protein
Chain: A: PDB Molecule:calcium-transporting atpase 2, plasma membrane-type;
PDBTitle: solution structure of the calmodulin-binding domain of plant calcium-2 atpase aca2
61c6f0kF_
not modelled 6.0 8
PDB header:membrane protein
Chain: F: PDB Molecule:actf;
PDBTitle: alternative complex iii
62d3buxb2
not modelled 5.9 17
Fold:N-cbl like
Superfamily:N-terminal domain of cbl (N-cbl)
Family:N-terminal domain of cbl (N-cbl)
63c6cghA_
not modelled 5.8 21
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily c member 2;
PDBTitle: solution structure of the four-helix bundle region of human j-protein2 zuotin, a component of ribosome-associated complex (rac)
64c4px7A_
not modelled 5.8 7
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatidylglycerophosphatase;
PDBTitle: crystal structure of lipid phosphatase e. coli pgpb
65c6gcs3_
not modelled 5.6 12
PDB header:oxidoreductase
Chain: 3: PDB Molecule:nd3 subunit (nu3m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
66c4k1cB_
not modelled 5.5 10
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
67c2m20B_
not modelled 5.5 15
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
68c2luvA_
not modelled 5.4 16
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-x;
PDBTitle: structure and binding interface of the cytosolic tails of axb22 integrin
69c1w8xP_
not modelled 5.1 11
PDB header:virus
Chain: P: PDB Molecule:protein p16;
PDBTitle: structural analysis of prd1

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Transmembrane helix prediction 

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