Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2131c_(cysQ)_2392525_2393328
DateMon Aug 5 13:25:25 BST 2019
Unique Job IDaf11177346bad1cb
SequenceVVSPAAPDLT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.905 Y:47.528 Z:51.582
Model (left) based on template c5djjA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:3'-phosphoadenosine 5'-phosphate phosphatase;
PDBTitle: structure of m. tuberculosis cysq, a pap phosphatase with po4 and 2mg2 bound
Confidence and coverage
Confidence:100.0% Coverage: 94%
252 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5djjA_
100.0 99
PDB header:hydrolase
Chain: A: PDB Molecule:3'-phosphoadenosine 5'-phosphate phosphatase;
PDBTitle: structure of m. tuberculosis cysq, a pap phosphatase with po4 and 2mg2 bound
2c3t0jB_
100.0 19
PDB header:hydrolase
Chain: B: PDB Molecule:inositol monophosphatase family protein;
PDBTitle: crystal structure of inositol monophosphatase - ii from staphylococcus2 aureus mssa476
3c4j13B_
100.0 19
PDB header:hydrolase
Chain: B: PDB Molecule:3'(2'),5'-bisphosphate nucleotidase, putative;
PDBTitle: structural and functional characterization of 3'(2'),5'-bisphosphate2 nucleotidase2 from entamoeba histolytica
4c5zonA_
100.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:histidinol-phosphatase;
PDBTitle: histidinol phosphate phosphatase from mycobacterium tuberculosis
5c3rydA_
100.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:inositol monophosphatase family protein;
PDBTitle: crystal strucutre of ca bound impase family protein from2 staphylococcus aureus
6c4gdgA_
100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:3'(2'),5'-bisphosphate nucleotidase, putative;
PDBTitle: structural and functional characterization of 3'(2'),5'-bisphosphate2 nucleotidase1 from entamoeba histolytica
7c2p3nB_
100.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: thermotoga maritima impase tm1415
8d1ka1a_
100.0 23
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
9d1jp4a_
100.0 21
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
10c2qflA_
100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: structure of suhb: inositol monophosphatase and extragenic2 suppressor from e. coli
11c4n81A_
100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:inositol monophosphatase;
PDBTitle: another flexible region at the active site of an inositol2 monophosphatase from zymomonas mobilis
12c5eq9A_
100.0 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:inositol monophosphatase;
PDBTitle: crystal structure of medicago truncatula histidinol-phosphate2 phosphatase (mthpp) in complex with l-histidinol phosphate and mg2+
13c3luzA_
100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:extragenic suppressor protein suhb;
PDBTitle: crystal structure of extragenic suppressor protein suhb from2 bartonella henselae, via combined iodide sad molecular replacement
14d1g0ha_
100.0 16
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
15c3qmfA_
100.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:inositol monophosphatase family protein;
PDBTitle: crystal strucuture of an inositol monophosphatase family protein2 (sas2203) from staphylococcus aureus mssa476
16d2hhma_
100.0 22
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
17c3b8bA_
100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:cysq, sulfite synthesis pathway protein;
PDBTitle: crystal structure of cysq from bacteroides thetaiotaomicron, a2 bacterial member of the inositol monophosphatase family
18c2czhB_
100.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:inositol monophosphatase 2;
PDBTitle: crystal structure of human myo-inositol monophosphatase 22 (impa2) with phosphate ion (orthorhombic form)
19c2fvzB_
100.0 25
PDB header:hydrolase
Chain: B: PDB Molecule:inositol monophosphatase 2;
PDBTitle: human inositol monophosphosphatase 2
20c5esyA_
100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:sal1 phosphatase;
PDBTitle: arabidopsis thaliana sal1
21d1xi6a_
not modelled 100.0 18
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
22c5zhhB_
not modelled 100.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: structure of inositol monophosphatase from anabaena (nostoc) sp. pcc2 7120
23d1vdwa_
not modelled 100.0 17
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
24c2q74B_
not modelled 100.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: mycobacterium tuberculosis suhb
25d1lbva_
not modelled 100.0 24
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
26d1inpa_
not modelled 100.0 20
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
27c2pcrA_
not modelled 100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: crystal structure of myo-inositol-1(or 4)-monophosphatase (aq_1983)2 from aquifex aeolicus vf5
28c5iz3B_
not modelled 100.0 15
PDB header:hydrolase
Chain: B: PDB Molecule:predicted protein;
PDBTitle: p. patens sedoheptulose-1,7-bisphosphatase
29c3uksB_
not modelled 99.8 15
PDB header:hydrolase
Chain: B: PDB Molecule:sedoheptulose-1,7 bisphosphatase, putative;
PDBTitle: 1.85 angstrom crystal structure of putative sedoheptulose-1,72 bisphosphatase from toxoplasma gondii
30d1d9qa_
not modelled 99.8 15
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
31c2fhyL_
not modelled 99.4 18
PDB header:hydrolase
Chain: L: PDB Molecule:fructose-1,6-bisphosphatase 1;
PDBTitle: structure of human liver fpbase complexed with a novel benzoxazole as2 allosteric inhibitor
32d1nuwa_
not modelled 99.3 16
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
33d1ftaa_
not modelled 99.3 18
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
34c2gq1A_
not modelled 99.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:fructose-1,6-bisphosphatase;
PDBTitle: crystal structure of recombinant type i fructose-1,6-bisphosphatase2 from escherichia coli complexed with sulfate ions
35d1bk4a_
not modelled 99.2 16
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
36c5oezA_
not modelled 99.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:fbp protein;
PDBTitle: crystal structure of leishmania major fructose-1,6-bisphosphatase in2 apo form.
37d1spia_
not modelled 98.9 17
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
38c3rojD_
not modelled 95.8 18
PDB header:hydrolase
Chain: D: PDB Molecule:d-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-
PDBTitle: d-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-bisphosphatase2 of synechocystis sp. pcc 6803
39c6ayyB_
not modelled 94.4 19
PDB header:hydrolase
Chain: B: PDB Molecule:fructose-1,6-bisphosphatase class 2;
PDBTitle: crystal structure of apo fructose-1,6-bisphosphatase from2 mycobacterium tuberculosis
40d1ni9a_
not modelled 85.6 19
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:GlpX-like bacterial fructose-1,6-bisphosphatase
41d1o12a1
not modelled 47.0 55
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:N-acetylglucosamine-6-phosphate deacetylase, NagA
42c3hjeA_
not modelled 32.1 31
PDB header:transferase
Chain: A: PDB Molecule:704aa long hypothetical glycosyltransferase;
PDBTitle: crystal structure of sulfolobus tokodaii hypothetical maltooligosyl2 trehalose synthase
43d1r89a1
not modelled 23.1 27
Fold:PAP/OAS1 substrate-binding domain
Superfamily:PAP/OAS1 substrate-binding domain
Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain
44c3b0vD_
not modelled 22.4 22
PDB header:oxidoreductase/rna
Chain: D: PDB Molecule:trna-dihydrouridine synthase;
PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna
45d2dsqg1
not modelled 20.5 19
Fold:Thyroglobulin type-1 domain
Superfamily:Thyroglobulin type-1 domain
Family:Thyroglobulin type-1 domain
46d1mdah_
not modelled 20.3 9
Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
47c3fhkF_
not modelled 19.4 26
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:upf0403 protein yphp;
PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide isomerase
48c1ikqA_
not modelled 17.5 40
PDB header:transferase
Chain: A: PDB Molecule:exotoxin a;
PDBTitle: pseudomonas aeruginosa exotoxin a, wild type
49d1icfi_
not modelled 16.4 25
Fold:Thyroglobulin type-1 domain
Superfamily:Thyroglobulin type-1 domain
Family:Thyroglobulin type-1 domain
50c6ei9A_
not modelled 15.7 16
PDB header:flavoprotein
Chain: A: PDB Molecule:trna-dihydrouridine synthase b;
PDBTitle: crystal structure of e. coli trna-dihydrouridine synthase b (dusb)
51d1m1la_
not modelled 14.8 15
Fold:Suppressor of Fused, N-terminal domain
Superfamily:Suppressor of Fused, N-terminal domain
Family:Suppressor of Fused, N-terminal domain
52c2h7tA_
not modelled 13.0 21
PDB header:protein binding
Chain: A: PDB Molecule:insulin-like growth factor-binding protein 2;
PDBTitle: solution structure of the c-terminal domain of insulin-like2 growth factor binding protein 2 (igfbp-2)
53c2pncB_
not modelled 12.9 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase, liver isozyme;
PDBTitle: crystal structure of bovine plasma copper-containing amine oxidase in2 complex with clonidine
54d1rmja_
not modelled 12.2 25
Fold:Thyroglobulin type-1 domain
Superfamily:Thyroglobulin type-1 domain
Family:Thyroglobulin type-1 domain
55d2dsrg1
not modelled 11.9 21
Fold:Thyroglobulin type-1 domain
Superfamily:Thyroglobulin type-1 domain
Family:Thyroglobulin type-1 domain
56c4qpwA_
not modelled 11.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 10;
PDBTitle: bixyn10a cbm1 with xylohexaose bound
57c6bmcA_
not modelled 10.9 31
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: the structure of a dimeric type ii dah7ps associated with pyocyanin2 biosynthesis in pseudomonas aeruginosa
58d1kfia4
not modelled 10.7 38
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
59d2j9ga2
not modelled 10.1 21
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
60c5hudA_
not modelled 9.8 31
PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate (dahp)
PDBTitle: non-covalent complex of and dahp synthase and chorismate mutase from2 corynebacterium glutamicum with bound transition state analog
61c4m4xA_
not modelled 9.1 12
PDB header:transcription
Chain: A: PDB Molecule:aryl hydrocarbon receptor;
PDBTitle: structure and dimerization properties of the aryl hydrocarbon receptor2 (ahr) pas-a domain
62c5uxmA_
not modelled 9.0 31
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: type ii dah7ps from pseudomonas aeruginosa with trp bound
63c5d28A_
not modelled 8.6 12
PDB header:viral protein
Chain: A: PDB Molecule:gm-csf/il-2 inhibition factor;
PDBTitle: complex of gm-csf/il-2 inhibition factor with granulocyte-macrophage2 colony-stimulating factor
64c5zcrB_
not modelled 8.6 22
PDB header:hydrolase
Chain: B: PDB Molecule:maltooligosyl trehalose synthase;
PDBTitle: dsm5389 glycosyltrehalose synthase
65d3pmga4
not modelled 8.2 19
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
66c5tw1E_
not modelled 7.7 11
PDB header:transcription activator/transferase/dna
Chain: E: PDB Molecule:dna-directed rna polymerase subunit omega;
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rbpa
67d1wdjb_
not modelled 7.2 17
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Hypothetical protein TT1808 (TTHA1514)
68c4nl8E_
not modelled 7.1 50
PDB header:dna binding protein
Chain: E: PDB Molecule:primosome assembly protein pria;
PDBTitle: pria helicase bound to ssb c-terminal tail peptide
69d1g3pa2
not modelled 7.1 86
Fold:N-terminal domains of the minor coat protein g3p
Superfamily:N-terminal domains of the minor coat protein g3p
Family:N-terminal domains of the minor coat protein g3p
70c5hr4J_
not modelled 6.9 18
PDB header:hydrolase/dna
Chain: J: PDB Molecule:mmei;
PDBTitle: structure of type iil restriction-modification enzyme mmei in complex2 with dna has implications for engineering of new specificities
71d1p7ga2
not modelled 6.9 10
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
72d1x4ka1
not modelled 6.8 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
73d2b7oa1
not modelled 6.8 24
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class-II DAHP synthetase
74c2g29A_
not modelled 6.7 15
PDB header:transport protein
Chain: A: PDB Molecule:nitrate transport protein nrta;
PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803
75c4aejA_
not modelled 6.5 50
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of human fibrillar procollagen type iii c-2 propeptide trimer
76c1gn4B_
not modelled 6.5 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide dismutase.
77d1w96a2
not modelled 6.2 19
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
78d1chua2
not modelled 6.2 11
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
79d1lgta1
not modelled 6.2 23
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
80d1wdja_
not modelled 6.2 25
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Hypothetical protein TT1808 (TTHA1514)
81d1ps9a1
not modelled 6.1 24
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
82d1w7ca1
not modelled 5.8 23
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
83d1ulza2
not modelled 5.7 24
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
84c4f2nL_
not modelled 5.6 13
PDB header:oxidoreductase
Chain: L: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of iron superoxide dismutase from leishmania major
85c3ot2B_
not modelled 5.6 42
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution
86c3ot2A_
not modelled 5.6 42
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution
87c1svfB_
not modelled 5.4 45
PDB header:viral protein
Chain: B: PDB Molecule:protein (fusion glycoprotein);
PDBTitle: paramyxovirus sv5 fusion protein core
88c3dgsA_
not modelled 5.4 60
PDB header:viral protein
Chain: A: PDB Molecule:coat protein a;
PDBTitle: changing the determinants of protein stability from covalent to non-2 covalent interactions by in-vitro evolution: a structural and3 energetic analysis
89c4a3uB_
not modelled 5.3 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh\:flavin oxidoreductase/nadh oxidase;
PDBTitle: x-structure of the old yellow enzyme homologue from zymomonas mobilis2 (ncr)
90c5k31E_
not modelled 5.3 47
PDB header:structural protein
Chain: E: PDB Molecule:collagen alpha-1(i) chain;
PDBTitle: crystal structure of human fibrillar procollagen type i c-propeptide2 homo-trimer
91d1oyaa_
not modelled 5.3 16
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
92c3knyA_
not modelled 5.3 21
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein bt_3535;
PDBTitle: crystal structure of a two domain protein with unknown function2 (bt_3535) from bacteroides thetaiotaomicron vpi-5482 at 2.60 a3 resolution
93c1sz1A_
not modelled 5.2 27
PDB header:transferase/rna
Chain: A: PDB Molecule:trna nucleotidyltransferase;
PDBTitle: mechanism of cca-adding enzymes specificity revealed by crystal2 structures of ternary complexes
94d1iv8a2
not modelled 5.2 21
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
95c3kruC_
not modelled 5.2 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below