Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2132_(-)_2393419_2393649
DateMon Aug 5 13:25:25 BST 2019
Unique Job ID2a5e450db2a93f84
SequenceMRTTVSLADD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.341 Y:24.226 Z:32.049
Model (left) based on template c2bj3D_
Top template information
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
Confidence and coverage
Confidence: 95.3% Coverage: 53%
40 residues ( 53% of your sequence) have been modelled with 95.3% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2bj3D_
95.3 23
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
2c1q5vB_
94.5 29
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
3d2hzab1
93.1 31
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
4c2ca9B_
93.1 26
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
5d2bj7a1
92.5 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
6d2hzaa1
92.3 31
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
7c2k29A_
90.4 15
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
8c5x3tA_
89.1 33
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
9c4fxeB_
84.4 16
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
10c1ea4K_
84.3 19
PDB header:gene regulation/dna
Chain: K: PDB Molecule:transcriptional repressor copg;
PDBTitle: transcriptional repressor copg/22bp dsdna complex
11d2cpga_
84.3 19
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
12c6g1nB_
79.0 18
PDB header:antitoxin
Chain: B: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the burkholderia pseudomallei antitoxin hicb
13c4q2uM_
71.9 9
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
14c6a6xC_
67.8 25
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
15c4pg8B_
62.6 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of s. aureus homoserine dehydrogenase at ph8.5
16c2k5jB_
60.5 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
17c3kk4B_
60.0 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
18c3do5A_
57.4 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of putative homoserine dehydrogenase (np_069768.1)2 from archaeoglobus fulgidus at 2.20 a resolution
19c2ejwB_
57.2 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:homoserine dehydrogenase;
PDBTitle: homoserine dehydrogenase from thermus thermophilus hb8
20c6dzsD_
55.5 11
PDB header:oxidoreductase
Chain: D: PDB Molecule:homoserine dehydrogenase;
PDBTitle: mycobacterial homoserine dehydrogenase thra in complex with nadp
21c3ingA_
not modelled 54.2 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of homoserine dehydrogenase (np_394635.1) from2 thermoplasma acidophilum at 1.95 a resolution
22c5yrzC_
not modelled 53.2 16
PDB header:antitoxin/hydrolase
Chain: C: PDB Molecule:hicb;
PDBTitle: toxin-antitoxin complex from streptococcus pneumoniae
23c3mtjA_
not modelled 50.7 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a
24c3c8mA_
not modelled 49.2 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of homoserine dehydrogenase from thermoplasma2 volcanium
25d2bsqe1
not modelled 47.5 13
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
26c6qeqD_
not modelled 47.5 13
PDB header:dna binding protein
Chain: D: PDB Molecule:pcff;
PDBTitle: pcff from enterococcus faecalis pcf10
27c2h1oH_
not modelled 47.5 14
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
28c4p7dA_
not modelled 45.5 13
PDB header:toxin
Chain: A: PDB Molecule:antitoxin hicb3;
PDBTitle: antitoxin hicb3 crystal structure
29d1p94a_
not modelled 39.4 15
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
30c6a7vU_
not modelled 36.0 31
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
31c4xb1B_
not modelled 33.8 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:319aa long hypothetical homoserine dehydrogenase;
PDBTitle: hyperthermophilic archaeal homoserine dehydrogenase in complex with2 nadph
32d1ebfa2
not modelled 29.6 15
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Homoserine dehydrogenase-like
33c6noyB_
not modelled 23.2 24
PDB header:structural protein
Chain: B: PDB Molecule:maintenance of carboxysome positioning b protein, mcsb;
PDBTitle: structure of cyanothece mcdb
34c1y9qA_
not modelled 19.5 28
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
35c3wa8B_
not modelled 18.9 23
PDB header:rna binding protein
Chain: B: PDB Molecule:crispr-associated protein, cse2 family;
PDBTitle: crystal structure of m. ruber casb
36c5avoA_
not modelled 17.0 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of the reduced form of homoserine dehydrogenase from2 sulfolobus tokodaii.
37c2uwjE_
not modelled 16.2 35
PDB header:chaperone
Chain: E: PDB Molecule:type iii export protein psce;
PDBTitle: structure of the heterotrimeric complex which regulates type iii2 secretion needle formation
38c1ebuA_
not modelled 16.1 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: homoserine dehydrogenase complex with nad analogue and l-2 homoserine
39c2oa6B_
not modelled 15.3 27
PDB header:lyase
Chain: B: PDB Molecule:aristolochene synthase;
PDBTitle: aristolochene synthase from aspergillus terreus complexed with2 pyrophosphate
40c3v1vA_
not modelled 14.9 5
PDB header:lyase
Chain: A: PDB Molecule:2-methylisoborneol synthase;
PDBTitle: crystal structure of 2-methylisoborneol synthase from streptomyces2 coelicolor a3(2) in complex with mg2+ and geranyl-s-thiolodiphosphate
41d1d0qa_
not modelled 14.4 27
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:DNA primase zinc finger
42c1ueoA_
not modelled 13.3 38
PDB header:antibiotic
Chain: A: PDB Molecule:penaeidin-3a;
PDBTitle: solution structure of the [t8a]-penaeidin-3
43c5n07A_
not modelled 12.0 18
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional repressor nsrr;
PDBTitle: structure of the [4fe-4s] form of the no response regulator nsrr
44c4wwrE_
not modelled 11.7 43
PDB header:transport protein
Chain: E: PDB Molecule:large proline-rich protein bag6;
PDBTitle: crystal structure of bag6-ubl4a dimerization domain
45c2k5rA_
not modelled 11.3 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein xf2673;
PDBTitle: solution nmr structure of xf2673 from xylella fastidiosa.2 northeast structural genomics consortium target xfr39
46c3v1xA_
not modelled 11.0 5
PDB header:lyase
Chain: A: PDB Molecule:2-methylisoborneol synthase;
PDBTitle: crystal structure of 2-methylisoborneol synthase from streptomyces2 coelicolor a3(2) in complex with mg2+ and 2-fluorogeranyl diphosphate
47d1rfma_
not modelled 10.9 3
Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
48c2e67D_
not modelled 10.8 26
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein tthb029;
PDBTitle: crystal structure of the hypothetical protein tthb029 from thermus2 thermophilus hb8
49c6ajnF_
not modelled 10.8 15
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
50d5easa2
not modelled 10.7 15
Fold:Terpenoid synthases
Superfamily:Terpenoid synthases
Family:Terpenoid cyclase C-terminal domain
51c5woqA_
not modelled 10.0 20
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator clgr;
PDBTitle: crystal structure of an xre family protein transcriptional regulator2 from mycobacterium smegmatis
52c4b1vM_
not modelled 9.9 40
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel-n domain bound to g-actin
53c4b1vN_
not modelled 9.9 40
PDB header:structural protein
Chain: N: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel-n domain bound to g-actin
54c6gtsC_
not modelled 9.2 15
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
55c5g2fB_
not modelled 9.1 29
PDB header:unknown function
Chain: B: PDB Molecule:type-iv like pilin ttha1222;
PDBTitle: type iv-like competence pilin ttha1222 from thermus2 thermophilus
56d1k25a1
not modelled 9.0 24
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
57c4mc8A_
not modelled 8.9 32
PDB header:lyase
Chain: A: PDB Molecule:putative sesquiterpene cyclase;
PDBTitle: hedycaryol synthase in complex with hepes
58d1pyya1
not modelled 8.8 24
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
59d1poia_
not modelled 8.2 19
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
60c5nx4A_
not modelled 8.2 23
PDB header:ligase
Chain: A: PDB Molecule:pentalenene synthase;
PDBTitle: crystal structure of linalool/nerolidol synthase from streptomyces2 clavuligerus
61c1nh2D_
not modelled 8.2 25
PDB header:transcription/dna
Chain: D: PDB Molecule:transcription initiation factor iia small chain;
PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex
62c1n20A_
not modelled 8.0 31
PDB header:isomerase
Chain: A: PDB Molecule:(+)-bornyl diphosphate synthase;
PDBTitle: (+)-bornyl diphosphate synthase: complex with mg and 3-aza-2 2,3-dihydrogeranyl diphosphate
63c2eq8C_
not modelled 7.9 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
64c2mdvB_
not modelled 7.9 16
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
65c5i1uB_
not modelled 7.8 23
PDB header:lyase
Chain: B: PDB Molecule:germacradien-4-ol synthase;
PDBTitle: crystal structure of germacradien-4-ol synthase from streptomyces2 citricolor
66c2eq7C_
not modelled 7.6 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
67d1y9qa1
not modelled 7.5 26
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
68d1yqfa1
not modelled 7.3 21
Fold:Mitochondrial glycoprotein MAM33-like
Superfamily:Mitochondrial glycoprotein MAM33-like
Family:Mitochondrial glycoprotein MAM33-like
69c2ldjA_
not modelled 7.1 63
PDB header:de novo protein
Chain: A: PDB Molecule:trp-cage mini-protein;
PDBTitle: 1h chemical shift assignments and structure of trp-cage mini-protein2 with d-amino acid
70c1nd9A_
not modelled 7.1 25
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-2;
PDBTitle: solution structure of the n-terminal subdomain of2 translation initiation factor if2
71d1nd9a_
not modelled 7.1 25
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:N-terminal subdomain of bacterial translation initiation factor IF2
72c5a0iA_
not modelled 7.1 14
PDB header:lyase
Chain: A: PDB Molecule:labdane-related diterpene synthase;
PDBTitle: crystallographic structure of the bacterial labdane-related diterpene2 synthase lrdc in complex with mg and ppi at 2.57 a resolution.
73c1nvpD_
not modelled 6.9 29
PDB header:transcription/dna
Chain: D: PDB Molecule:transcription initiation factor iia gamma chain;
PDBTitle: human tfiia/tbp/dna complex
74c4b1uM_
not modelled 6.9 40
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel domain and rpel motif directed2 assemblies with g-actin reveal the molecular basis for actin binding3 cooperativity.
75c4ypiA_
not modelled 6.7 23
PDB header:rna binding protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35
76d1q9ja2
not modelled 6.6 19
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
77c6m7fB_
not modelled 6.6 22
PDB header:lyase
Chain: B: PDB Molecule:cucumene synthase;
PDBTitle: wild-type cucumene synthase
78d1y9ba1
not modelled 6.5 11
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
79d1zyba1
not modelled 6.5 46
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
80c2cooA_
not modelled 6.5 60
PDB header:transferase
Chain: A: PDB Molecule:lipoamide acyltransferase component of branched-
PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase
81c3jv1A_
not modelled 6.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:p22 protein;
PDBTitle: crystal structure of the trypanosoma brucei p22 protein
82c6hs6E_
not modelled 6.1 11
PDB header:transport protein
Chain: E: PDB Molecule:type vi secretion protein impa;
PDBTitle: c-terminal domain of the tssa component of the type vi secretion2 system from burkholderia cenocepacia
83d1ps1a_
not modelled 6.1 27
Fold:Terpenoid synthases
Superfamily:Terpenoid synthases
Family:Aristolochene/pentalenene synthase
84c2lkyA_
not modelled 6.0 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
85c6o7yA_
not modelled 6.0 21
PDB header:rna binding protein
Chain: A: PDB Molecule:putative eukaryotic translation initiation factor 4e type
PDBTitle: trypanosoma cruzi eif4e5 translation initiation factor in complex with2 cap-4
86c3uauA_
not modelled 6.0 27
PDB header:cell adhesion
Chain: A: PDB Molecule:surface-exposed lipoprotein;
PDBTitle: crystal structure of the lipoprotein jlpa
87c4zq8B_
not modelled 5.9 18
PDB header:transferase
Chain: B: PDB Molecule:isoprenoid synthase;
PDBTitle: crystal structure of a terpene synthase from streptomyces lydicus,2 target efi-540129
88c3dv0I_
not modelled 5.9 13
PDB header:oxidoreductase/transferase
Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase
PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex
89c3qv0A_
not modelled 5.9 11
PDB header:protein binding
Chain: A: PDB Molecule:mitochondrial acidic protein mam33;
PDBTitle: crystal structure of saccharomyces cerevisiae mam33
90c4wwxB_
not modelled 5.5 21
PDB header:hydrolase, ligase
Chain: B: PDB Molecule:v(d)j recombination-activating protein 1;
PDBTitle: crystal structure of the core rag1/2 recombinase
91d1nvpd1
not modelled 5.4 31
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
92c1w3dA_
not modelled 5.3 13
PDB header:transferase
Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of
PDBTitle: nmr structure of the peripheral-subunit binding domain of bacillus2 stearothermophilus e2p
93c2bnoA_
not modelled 5.3 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase from s.2 wedmorenis.
94d1w85i_
not modelled 5.3 13
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
95c6ehmB_
not modelled 5.3 23
PDB header:virus like particle
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: model of the ebola virus nucleocapsid subunit from recombinant virus-2 like particles
96c3n0fA_
not modelled 5.3 14
PDB header:lyase
Chain: A: PDB Molecule:isoprene synthase;
PDBTitle: crystal structure of isoprene synthase from grey poplar leaves2 (populus x canescens)
97c5f5mB_
not modelled 5.3 31
PDB header:nuclear protein
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: crystal structure of marburg virus nucleoprotein core domain
98c6bqcA_
not modelled 5.2 24
PDB header:transferase
Chain: A: PDB Molecule:cyclopropane-fatty-acyl-phospholipid synthase;
PDBTitle: cyclopropane fatty acid synthase from e. coli
99c6egkB_
not modelled 5.2 14
PDB header:lyase
Chain: B: PDB Molecule:cucumene synthase;
PDBTitle: t181n cucumene synthase

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