Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2137c_(-)_2396910_2397323
DateMon Aug 5 13:25:25 BST 2019
Unique Job IDda934759ec47e69f
SequenceMRNMKSTSHE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.331 Y:15.567 Z:10.379
Model (left) based on template c5ujqA_
Top template information
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin;
PDBTitle: nmr solution structure of the two-component bacteriocin cbnxy
Confidence and coverage
Confidence: 35.6% Coverage: 8%
11 residues ( 8% of your sequence) have been modelled with 35.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ujqA_



35.6 73
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin;
PDBTitle: nmr solution structure of the two-component bacteriocin cbnxy
2c1ngmB_



30.8 23
PDB header:transcription/dna
Chain: B: PDB Molecule:transcription factor iiib brf1 subunit;
PDBTitle: crystal structure of a yeast brf1-tbp-dna ternary complex
3c3j9eD_



20.3 29
PDB header:viral protein
Chain: D: PDB Molecule:vp5;
PDBTitle: atomic structure of a non-enveloped virus reveals ph sensors for a2 coordinated process of cell entry
4c6eacC_



13.4 38
PDB header:transferase
Chain: C: PDB Molecule:selo;
PDBTitle: pseudomonas syringae selo
5c2m7oA_



13.1 44
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein np_346341.1 from streptococcus pneumoniae
6d1c4qa_



12.6 23
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
7c2hj1A_



11.8 83
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae
8d2hj1a1



11.8 83
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:HI0395-like
9c1syqB_



10.1 44
PDB header:cell adhesion
Chain: B: PDB Molecule:talin 1;
PDBTitle: human vinculin head domain vh1, residues 1-258, in complex with human2 talin's vinculin binding site 1, residues 607-636
10c1x31D_



9.0 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:sarcosine oxidase delta subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
11c4hecB_



8.7 29
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
12d1r4pb_



8.6 26
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
13d1o12a1



8.4 31
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:N-acetylglucosamine-6-phosphate deacetylase, NagA
14c3cmuA_



8.2 49
PDB header:recombination/dna
Chain: A: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-ssdna/dsdna2 structures
15c1dmlF_



8.0 60
PDB header:dna binding protein/transferase
Chain: F: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
16c1dmlH_



8.0 60
PDB header:dna binding protein/transferase
Chain: H: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
17c1dmlB_



7.8 60
PDB header:dna binding protein/transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
18c1dmlD_



7.8 60
PDB header:dna binding protein/transferase
Chain: D: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
19c2ltrA_



7.2 22
PDB header:rna binding protein
Chain: A: PDB Molecule:protein rde-4;
PDBTitle: solution structure of rde-4(32-136)
20d2ns1b1



6.7 32
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
21c5tvfF_



not modelled 6.5 28
PDB header:lyase
Chain: F: PDB Molecule:s-adenosylmethionine decarboxylase proenzyme-like,
PDBTitle: crystal structure of trypanosoma brucei adometdc/prozyme heterodimer2 in complex with inhibitor cgp 40215
22d1ov9a_



not modelled 6.4 43
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
23d1dqza_



not modelled 6.4 29
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Mycobacterial antigens
24c6a7vU_



not modelled 6.2 40
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
25c4l1nA_



not modelled 6.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved lipoprotein, putative;
PDBTitle: crystal structure of a putative conserved lipoprotein (nt01cx_1156)2 from clostridium novyi nt at 2.70 a resolution
26d1f0na_



not modelled 6.1 31
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Mycobacterial antigens
27c3b4qA_



not modelled 6.0 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a conserved protein domain (unknown2 function) from corynebacterium diphtheriae
28c3j60I_



not modelled 6.0 54
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8e;
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
29c1irrA_



not modelled 6.0 40
PDB header:cytokine
Chain: A: PDB Molecule:paralytic peptide;
PDBTitle: solution structure of paralytic peptide of the silkworm,2 bombyx mori
30c2djcA_



not modelled 5.9 40
PDB header:cytokine
Chain: A: PDB Molecule:growth-blocking peptide;
PDBTitle: solution structure of growth-blocking peptide of the2 tobacco cutworm, spodoptera litura
31d2bosa_



not modelled 5.6 22
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
32c1t01B_



not modelled 5.6 44
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:talin 1;
PDBTitle: vinculin complexed with the vbs1 helix from talin
33c1v28A_



not modelled 5.4 40
PDB header:toxin
Chain: A: PDB Molecule:paralytic peptide;
PDBTitle: solution structure of paralytic peptide of the wild2 silkmoth, antheraea yamamai
34c2k5jB_



not modelled 5.4 37
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
35c2rd5D_



not modelled 5.4 26
PDB header:protein binding
Chain: D: PDB Molecule:pii protein;
PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana
36d2qmma1



not modelled 5.4 28
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF1056-like
37c3wzhA_



not modelled 5.4 22
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein af_1864;
PDBTitle: crystal structure of afcsx3
38c3ncpD_



not modelled 5.3 32
PDB header:signaling protein
Chain: D: PDB Molecule:nitrogen regulatory protein p-ii (glnb-2);
PDBTitle: glnk2 from archaeoglobus fulgidus
39c3bzqA_



not modelled 5.3 26
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:nitrogen regulatory protein p-ii;
PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite