Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2142A_(RVBD2142A)_2402515_2402730
DateMon Aug 5 13:25:26 BST 2019
Unique Job ID3bf073104d2b65f6
SequenceVVVNRALLAS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.193 Y:17.890 Z:37.450
Model (left) based on template d2icya1
Top template information
Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:GlmU C-terminal domain-like
Confidence and coverage
Confidence: 33.1% Coverage: 30%
21 residues ( 30% of your sequence) have been modelled with 33.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2icya1



33.1 24
Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:GlmU C-terminal domain-like
2c3terA_



28.8 40
PDB header:metal binding protein
Chain: A: PDB Molecule:mammalian stromal interaction molecule-1;
PDBTitle: crystal structure of soar domain with inhibition helix from c. elegans
3d2glia1



26.2 58
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
4d1nkta1



21.0 32
Fold:Pre-protein crosslinking domain of SecA
Superfamily:Pre-protein crosslinking domain of SecA
Family:Pre-protein crosslinking domain of SecA
5c3teqB_



14.7 47
PDB header:signaling protein
Chain: B: PDB Molecule:stromal interaction molecule 1;
PDBTitle: crystal structure of soar domain
6c3ajbB_



14.5 75
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: crystal structure of human pex3p in complex with n-terminal pex19p2 peptide
7d1tf5a1



14.4 33
Fold:Pre-protein crosslinking domain of SecA
Superfamily:Pre-protein crosslinking domain of SecA
Family:Pre-protein crosslinking domain of SecA
8d1rlra1



12.7 16
Fold:R1 subunit of ribonucleotide reductase, N-terminal domain
Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain
Family:R1 subunit of ribonucleotide reductase, N-terminal domain
9d3ci0k1



8.6 33
Fold:SAM domain-like
Superfamily:GspK insert domain-like
Family:GspK insert domain-like
10c5w21A_



8.3 30
PDB header:hydrolase/protein binding
Chain: A: PDB Molecule:klotho;
PDBTitle: crystal structure of a 1:1:1 fgf23-fgfr1c-aklotho ternary complex
11c2kp6A_



6.9 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein cv0237 from chromobacterium2 violaceum. northeast structural genomics consortium (nesg) target3 cvt1
12c5ld1D_



6.1 24
PDB header:transferase
Chain: D: PDB Molecule:polyphosphate:amp phosphotransferase;
PDBTitle: crystal structure of polyphosphate kinase from meiothermus ruber bound2 to atp
13c3hgkE_



6.1 35
PDB header:transferase
Chain: E: PDB Molecule:effector protein hopab2;
PDBTitle: crystal structure of effect protein avrptob complexed with2 kinase pto
14d1h3na2



5.7 19
Fold:ValRS/IleRS/LeuRS editing domain
Superfamily:ValRS/IleRS/LeuRS editing domain
Family:ValRS/IleRS/LeuRS editing domain
15c5aj8B_



5.5 18
PDB header:structural protein
Chain: B: PDB Molecule:tubulin binding cofactor c;
PDBTitle: tubulin binding cofactor c from leishmania major
16c3miwE_



5.5 57
PDB header:viral protein
Chain: E: PDB Molecule:non-structural glycoprotein 4;
PDBTitle: crystal structure of rotavirus nsp4
17c6aqeB_



5.4 28
PDB header:transferase
Chain: B: PDB Molecule:molecule a;
PDBTitle: crystal structure of ppk2 in complex with mg atp
18c3r1rB_



5.3 14
PDB header:complex (oxidoreductase/peptide)
Chain: B: PDB Molecule:ribonucleotide reductase r1 protein;
PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli
19c6mcjA_



5.3 27
PDB header:protein binding
Chain: A: PDB Molecule:orange carotenoid-binding protein;
PDBTitle: structure of helical carotenoid protein 2 from fremyella diplosiphon

Binding site prediction 

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