Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2144c_(-)_2404173_2404529
DateMon Aug 5 13:25:26 BST 2019
Unique Job ID90bc2885310e3d49
SequenceMLIIALVLAL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:11.665 Y:12.341 Z:27.766
Model (left) based on template c6c6lO_
Top template information
PDB header:membrane protein
Chain: O: PDB Molecule:v-type proton atpase subunit f;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
Confidence and coverage
Confidence: 88.8% Coverage: 14%
17 residues ( 14% of your sequence) have been modelled with 88.8% confidence by the single highest scoring template.
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Warning: 53% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6c6lO_
88.8 47
PDB header:membrane protein
Chain: O: PDB Molecule:v-type proton atpase subunit f;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
2c5kk2E_
73.1 21
PDB header:membrane protein, transport protein, sig
Chain: E: PDB Molecule:voltage-dependent calcium channel gamma-2 subunit;
PDBTitle: architecture of fully occupied glua2 ampa receptor - tarp complex2 elucidated by single particle cryo-electron microscopy
3c3arct_
62.2 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
4c6qkcJ_
59.4 13
PDB header:membrane protein
Chain: J: PDB Molecule:voltage-dependent calcium channel gamma-8 subunit;
PDBTitle: glua1/2 in complex with auxiliary subunit gamma-8
5c3a0bT_
46.7 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex
6c5vhxE_
40.6 33
PDB header:transport protein
Chain: E: PDB Molecule:glutamate receptor 2,germ cell-specific gene 1-like
PDBTitle: glua2-1xgsg1l bound to zk
7c6akfC_
38.2 23
PDB header:membrane protein/toxin
Chain: C: PDB Molecule:claudin-3;
PDBTitle: crystal structure of mouse claudin-3 p134a mutant in complex with c-2 terminal fragment of clostridium perfringens enterotoxin
8c3x29A_
35.5 18
PDB header:cell adhesion
Chain: A: PDB Molecule:claudin-19;
PDBTitle: crystal structure of mouse claudin-19 in complex with c-terminal2 fragment of clostridium perfringens enterotoxin
9c4p79A_
34.7 23
PDB header:cell adhesion
Chain: A: PDB Molecule:claudin-15;
PDBTitle: crystal structure of mouse claudin-15
10c1iijA_
34.2 46
PDB header:signaling protein
Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase;
PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
11c2l5bA_
27.8 29
PDB header:apoptosis
Chain: A: PDB Molecule:activator of apoptosis harakiri;
PDBTitle: solution structure of the transmembrane domain of bcl-2 member2 harakiri in micelles
12c2kncA_
27.1 25
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
13c2ktoA_
26.3 42
PDB header:antibiotic
Chain: A: PDB Molecule:lchb;
PDBTitle: spatial structure of lch-beta peptide from two-component lantibiotic2 lichenicidin vk21
14c3mk7F_
22.1 10
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
15c5z62N_
16.3 31
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase
16c6bd4A_
14.5 17
PDB header:membrane protein
Chain: A: PDB Molecule:frizzled-4/rubredoxin chimeric protein;
PDBTitle: crystal structure of human apo-frizzled4 receptor
17c2l8sA_
14.0 31
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
18c1r7gA_
13.8 30
PDB header:membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 100mm dpc)
19c1r7cA_
13.8 30
PDB header:membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 50% tfe)
20c4hg6A_
13.3 28
PDB header:transferase
Chain: A: PDB Molecule:cellulose synthase subunit a;
PDBTitle: structure of a cellulose synthase - cellulose translocation2 intermediate
21c5aezA_
not modelled 13.1 17
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
22c4blpD_
not modelled 12.5 46
PDB header:hydrolase
Chain: D: PDB Molecule:packaging enzyme p4;
PDBTitle: p4 protein from bacteriophage phi13
23c2m67A_
not modelled 12.4 26
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
24c4bloC_
not modelled 12.4 38
PDB header:hydrolase
Chain: C: PDB Molecule:packaging enzyme p4;
PDBTitle: p4 protein from bacteriophage phi6 in complex with adp
25c6f46A_
not modelled 11.6 50
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 1;
PDBTitle: structure of the transmembrane helix of bclxl in phospholipid2 nanodiscs
26c2jpxA_
not modelled 10.8 32
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: a18h vpu tm structure in lipid bilayers
27c5mx2T_
not modelled 10.7 15
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
28d1pw4a_
not modelled 10.3 21
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
29c5b66T_
not modelled 9.6 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
30c5b5et_
not modelled 9.4 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
31c4il6T_
not modelled 9.4 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of sr-substituted photosystem ii
32c4pj0t_
not modelled 9.3 15
PDB header:oxidoreductase, electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
33c4pj0T_
not modelled 9.3 15
PDB header:oxidoreductase, electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
34c5mx2t_
not modelled 9.3 15
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
35c1q90M_
not modelled 9.3 33
PDB header:photosynthesis
Chain: M: PDB Molecule:cytochrome b6f complex subunit petm;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
36d1q90m_
not modelled 9.3 33
Fold:Single transmembrane helix
Superfamily:PetM subunit of the cytochrome b6f complex
Family:PetM subunit of the cytochrome b6f complex
37c5ws6T_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (preflash two-flash dataset
38c5ws6t_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (preflash two-flash dataset
39c5h2ft_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of the psbm-deletion mutant of photosystem ii
40c5v2ct_
not modelled 9.3 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: re-refinement of crystal structure of photosystem ii complex
41c5gtiT_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (two flash dataset)
42c3wu2T_
not modelled 9.3 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
43c5ws5T_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (preflash dark dataset)
44c5gtht_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (dark dataset)
45c5gtit_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (two flash dataset)
46c5kait_
not modelled 9.3 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: nh3-bound rt xfel structure of photosystem ii 500 ms after the 2nd2 illumination (2f) at 2.8 a resolution
47c5v2cT_
not modelled 9.3 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: re-refinement of crystal structure of photosystem ii complex
48c5kafT_
not modelled 9.3 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 3.0 a2 resolution
49c3wu2t_
not modelled 9.3 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
50c5ws5t_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (preflash dark dataset)
51c5h2fT_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of the psbm-deletion mutant of photosystem ii
52c5gthT_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (dark dataset)
53c5kaft_
not modelled 9.3 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 3.0 a2 resolution
54c5kaiT_
not modelled 9.3 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: nh3-bound rt xfel structure of photosystem ii 500 ms after the 2nd2 illumination (2f) at 2.8 a resolution
55c5tisT_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: room temperature xfel structure of the native, doubly-illuminated2 photosystem ii complex
56c4il6t_
not modelled 9.3 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of sr-substituted photosystem ii
57c4ub6T_
not modelled 9.3 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
58c5b66t_
not modelled 9.3 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
59c5b5eT_
not modelled 9.3 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
60c5zznt_
not modelled 9.3 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of photosystem ii from an sqdg-deficient mutant of2 thermosynechococcus elongatus
61c5tist_
not modelled 9.3 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: room temperature xfel structure of the native, doubly-illuminated2 photosystem ii complex
62c5zznT_
not modelled 9.3 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of photosystem ii from an sqdg-deficient mutant of2 thermosynechococcus elongatus
63c4ub8t_
not modelled 9.3 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
64c4ub8T_
not modelled 9.3 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
65c4ub6t_
not modelled 9.3 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
66c3bz2T_
not modelled 9.2 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 2 of 2). this2 file contains second monomer of psii dimer
67c4ixrt_
not modelled 9.2 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
68c4ixrT_
not modelled 9.2 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
69c3bz1T_
not modelled 9.2 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 1 of 2). this2 file contains first monomer of psii dimer
70c4ixqt_
not modelled 9.2 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
71c4fbyg_
not modelled 9.2 15
PDB header:photosynthesis
Chain: G: PDB Molecule:photosystem q(b) protein 1;
PDBTitle: fs x-ray diffraction of photosystem ii
72c4tnit_
not modelled 9.2 15
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
73c4tnkT_
not modelled 9.2 15
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
74c4tnkt_
not modelled 9.2 15
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
75c4tnjT_
not modelled 9.2 15
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
76c3prqT_
not modelled 9.2 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
77c4ixqT_
not modelled 9.2 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
78c4tniT_
not modelled 9.2 15
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
79c4tnjt_
not modelled 9.2 15
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
80c3prrT_
not modelled 9.2 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
81c4tnht_
not modelled 9.2 15
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
82c4tnhT_
not modelled 9.2 15
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
83c4fbyT_
not modelled 9.2 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: fs x-ray diffraction of photosystem ii
84c1s5lt_
not modelled 9.1 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii psbt protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
85c1s5lT_
not modelled 9.1 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii psbt protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
86c5e79T_
not modelled 9.0 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals
87c3a0hT_
not modelled 9.0 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex
88c3a0ht_
not modelled 9.0 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex
89c5e79t_
not modelled 9.0 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals
90d2axtt1
not modelled 9.0 15
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein T, PsbT
Family:PsbT-like
91c2axtT_
not modelled 9.0 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
92c5e7cT_
not modelled 9.0 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
93c5e7ct_
not modelled 9.0 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
94c2axtt_
not modelled 9.0 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
95c3kziT_
not modelled 9.0 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
96c3arcT_
not modelled 9.0 15
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
97c3a0bt_
not modelled 9.0 15
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex
98c4rvyT_
not modelled 9.0 15
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
99c4rvyt_
not modelled 9.0 15
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below