Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2145c_(wag31)_2404624_2405406
DateMon Aug 5 13:25:26 BST 2019
Unique Job ID565c4c2e26ff3c3d
SequenceMPLTPADVHN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.924 Y:39.760 Z:47.776
Model (left) based on template c4ug1A_
Top template information
PDB header:cell cycle
Chain: A: PDB Molecule:cell cycle protein gpsb;
PDBTitle: gpsb n-terminal domain
Confidence and coverage
Confidence: 99.6% Coverage: 23%
60 residues ( 23% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ug1A_
99.6 32
PDB header:cell cycle
Chain: A: PDB Molecule:cell cycle protein gpsb;
PDBTitle: gpsb n-terminal domain
2c6gqaD_
99.5 34
PDB header:cell cycle
Chain: D: PDB Molecule:cell cycle protein gpsb;
PDBTitle: cell division regulator s. pneumoniae gpsb
3c4ug3C_
99.5 29
PDB header:cell cycle
Chain: C: PDB Molecule:cell cycle protein gpsb;
PDBTitle: b. subtilis gpsb n-terminal domain
4c2wukD_
99.5 44
PDB header:cell cycle
Chain: D: PDB Molecule:septum site-determining protein diviva;
PDBTitle: diviva n-terminal domain, f17a mutant
5c5fv8B_
65.8 34
PDB header:structural protein
Chain: B: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
6c5fv8A_
65.6 34
PDB header:structural protein
Chain: A: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
7c2zv4O_
57.1 12
PDB header:structural protein
Chain: O: PDB Molecule:major vault protein;
PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution
8c3a5tB_
52.2 19
PDB header:transcription regulator/dna
Chain: B: PDB Molecule:transcription factor mafg;
PDBTitle: crystal structure of mafg-dna complex
9c5tdyD_
43.8 14
PDB header:motor protein
Chain: D: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: structure of cofolded flifc:flign complex from thermotoga maritima
10c5gasN_
35.2 18
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
11c5mqfI_
34.7 18
PDB header:splicing
Chain: I: PDB Molecule:pre-mrna-processing factor 19;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
12d1dfoa_
30.3 15
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
13c2e43A_
29.5 19
PDB header:transcription/dna
Chain: A: PDB Molecule:ccaat/enhancer-binding protein beta;
PDBTitle: crystal structure of c/ebpbeta bzip homodimer k269a mutant2 bound to a high affinity dna fragment
14c2pl9F_
28.6 45
PDB header:signaling protien
Chain: F: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal
15c2pl9E_
28.6 45
PDB header:signaling protien
Chain: E: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal
16c2pl9D_
28.5 45
PDB header:signaling protien
Chain: D: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal
17c1ci6A_
27.8 20
PDB header:transcription
Chain: A: PDB Molecule:transcription factor atf-4;
PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer
18c5zk1A_
26.7 19
PDB header:transcription/dna
Chain: A: PDB Molecule:cyclic amp-responsive element-binding protein 1;
PDBTitle: crystal structure of the crtc2(semet)-creb-cre complex
19c1ysaD_
26.0 15
PDB header:transcription/dna
Chain: D: PDB Molecule:protein (gcn4);
PDBTitle: the gcn4 basic region leucine zipper binds dna as a dimer2 of uninterrupted alpha helices: crystal structure of the3 protein-dna complex
20c3qo8A_
25.7 16
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic;
PDBTitle: crystal structure of seryl-trna synthetase from candida albicans
21c1y4cA_
not modelled 25.3 17
PDB header:de novo protein
Chain: A: PDB Molecule:maltose binding protein fused with designed
PDBTitle: designed helical protein fusion mbp
22c1gd2G_
not modelled 24.8 17
PDB header:transcription/dna
Chain: G: PDB Molecule:transcription factor pap1;
PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna
23c2mxrA_
not modelled 24.7 15
PDB header:signaling protein
Chain: A: PDB Molecule:protein phosphatase 1 regulatory subunit 12a;
PDBTitle: solution structure of coiled coil domain of myosin binding subunit of2 myosin light chain phosphatase
24c1dh3A_
not modelled 24.1 19
PDB header:transcription/dna
Chain: A: PDB Molecule:transcription factor creb;
PDBTitle: crystal structure of a creb bzip-cre complex reveals the2 basis for creb faimly selective dimerization and dna3 binding
25c4cr4Y_
not modelled 23.9 39
PDB header:hydrolase
Chain: Y: PDB Molecule:26s proteasome complex subunit sem1;
PDBTitle: deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
26c5a5bY_
not modelled 23.9 39
PDB header:hydrolase
Chain: Y: PDB Molecule:26s proteasome complex subunit sem1;
PDBTitle: structure of the 26s proteasome-ubp6 complex
27c4cr2Y_
not modelled 23.9 39
PDB header:hydrolase
Chain: Y: PDB Molecule:26s proteasome complex subunit sem1;
PDBTitle: deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
28c4cr3Y_
not modelled 23.9 39
PDB header:hydrolase
Chain: Y: PDB Molecule:26s proteasome complex subunit sem1;
PDBTitle: deep classification of a large cryo-em dataset defines the2 conformational landscape of the 26s proteasome
29c3iynQ_
not modelled 23.6 24
PDB header:virus
Chain: Q: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
30c1t2kD_
not modelled 23.5 18
PDB header:transcription/dna
Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2;
PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna
31c2rg8A_
not modelled 23.4 14
PDB header:apoptosis, translation
Chain: A: PDB Molecule:programmed cell death protein 4;
PDBTitle: crystal structure of programmed for cell death 4 middle ma3 domain
32c1fosF_
not modelled 22.7 21
PDB header:transcription/dna
Chain: F: PDB Molecule:c-jun proto-oncogene protein;
PDBTitle: two human c-fos:c-jun:dna complexes
33c1nfoA_
not modelled 21.9 19
PDB header:lipid transport
Chain: A: PDB Molecule:apolipoprotein e2;
PDBTitle: apolipoprotein e2 (apoe2, d154a mutation)
34c2wt7B_
not modelled 21.3 26
PDB header:transcription
Chain: B: PDB Molecule:transcription factor mafb;
PDBTitle: crystal structure of the bzip heterodimeric complex mafb:cfos bound to2 dna
35c1fosE_
not modelled 20.4 23
PDB header:transcription/dna
Chain: E: PDB Molecule:p55-c-fos proto-oncogene protein;
PDBTitle: two human c-fos:c-jun:dna complexes
36c5jxfA_
not modelled 20.3 8
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of flavobacterium psychrophilum dpp11 in complex2 with dipeptide arg-asp
37d1nkpa_
not modelled 18.9 36
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
38c3ecdC_
not modelled 17.8 15
PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase 2;
PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei
39c5c9nB_
not modelled 17.1 41
PDB header:cell cycle
Chain: B: PDB Molecule:geminin coiled-coil domain-containing protein 1;
PDBTitle: crystal structure of gemc1 coiled-coil domain
40c3n4xB_
not modelled 16.7 11
PDB header:replication
Chain: B: PDB Molecule:monopolin complex subunit csm1;
PDBTitle: structure of csm1 full-length
41c4geqF_
not modelled 14.9 32
PDB header:cell cycle
Chain: F: PDB Molecule:kinetochore-associated protein cnn1;
PDBTitle: crystal structure of the spc24-spc25/cnn1 binding interface
42c4cgkA_
not modelled 14.7 15
PDB header:cell cycle
Chain: A: PDB Molecule:secreted 45 kda protein;
PDBTitle: crystal structure of the essential protein pcsb from streptococcus2 pneumoniae
43c5oi7A_
not modelled 14.6 15
PDB header:protein binding
Chain: A: PDB Molecule:centrosomal protein of 85 kda;
PDBTitle: human cep85 - coiled coil domain 4
44c3q8tB_
not modelled 14.4 15
PDB header:apoptosis
Chain: B: PDB Molecule:beclin-1;
PDBTitle: crystal structure of the coiled coil domain of beclin 1, an essential2 autophagy protein
45c2dkjB_
not modelled 13.8 24
PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
46c2gl2B_
not modelled 13.6 6
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
47d2oa5a1
not modelled 12.6 32
Fold:BLRF2-like
Superfamily:BLRF2-like
Family:BLRF2-like
48c5wjbA_
not modelled 12.3 12
PDB header:actin/dna binding protein
Chain: A: PDB Molecule:capsid assembly scaffolding protein,myosin-7;
PDBTitle: crystal structure of amino acids 1733-1797 of human beta cardiac2 myosin fused to gp7
49c5j9qH_
not modelled 12.0 15
PDB header:transferase
Chain: H: PDB Molecule:chromatin modification-related protein yng2;
PDBTitle: crystal structure of the nua4 core complex
50c5j0kA_
not modelled 12.0 31
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein 2l4hc2_23;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
51c3iynR_
not modelled 11.9 22
PDB header:virus
Chain: R: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
52d1nlwa_
not modelled 11.4 12
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
53c4c9yB_
not modelled 11.4 6
PDB header:cell cycle
Chain: B: PDB Molecule:spindle and kinetochore-associated protein 1;
PDBTitle: structural basis for the microtubule binding of the human2 kinetochore ska complex
54c5ew5C_
not modelled 11.1 7
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
55c3m9bK_
not modelled 11.0 22
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
56d1nkpb_
not modelled 10.3 19
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
57c5d3aA_
not modelled 10.3 16
PDB header:motor protein
Chain: A: PDB Molecule:kinesin-like protein kif21a;
PDBTitle: kif21a regulatory coiled coil
58c2ke4A_
not modelled 10.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
59c5w78B_
not modelled 10.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:acyloxyacyl hydrolase;
PDBTitle: human acyloxyacyl hydrolase (aoah), proteolytically processed
60c2lycA_
not modelled 10.0 12
PDB header:protein binding
Chain: A: PDB Molecule:spindle and kinetochore-associated protein 1 homolog;
PDBTitle: structure of c-terminal domain of ska1
61c2n2tA_
not modelled 9.9 40
PDB header:unknown function, structural genomics
Chain: A: PDB Molecule:or303;
PDBTitle: solution nmr structure of de novo designed protein (fda_60), northeast2 structural genomics consortium (nesg) target or303
62c1avoA_
not modelled 9.9 21
PDB header:proteasome activator
Chain: A: PDB Molecule:11s regulator;
PDBTitle: proteasome activator reg(alpha)
63c3oq3A_
not modelled 9.5 23
PDB header:cytokine/viral protein
Chain: A: PDB Molecule:interferon alpha-5;
PDBTitle: structural basis of type-i interferon sequestration by a poxvirus2 decoy receptor
64d2zjre1
not modelled 9.4 21
Fold:Ribosomal protein L6
Superfamily:Ribosomal protein L6
Family:Ribosomal protein L6
65c3seeA_
not modelled 9.3 20
PDB header:sugar binding protein
Chain: A: PDB Molecule:hypothetical sugar binding protein;
PDBTitle: crystal structure of a putative sugar binding protein (bt_4411) from2 bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution
66d1wa8b1
not modelled 9.3 14
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
67d1nlwe_
not modelled 9.1 13
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
68d2fura1
not modelled 9.0 27
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
69c3n0lA_
not modelled 8.9 17
PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni
70d1p7ba1
not modelled 8.8 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Cytoplasmic domain of inward rectifier potassium channel
71c4zryA_
not modelled 8.8 16
PDB header:protein fibril
Chain: A: PDB Molecule:keratin, type i cytoskeletal 10;
PDBTitle: crystal structure of the heterocomplex between coil 2b domains of2 human intermediate filament proteins keratin 1 (krt1) and keratin 103 (krt10)
72c4j2nB_
not modelled 8.8 20
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
73c5vr2A_
not modelled 8.5 30
PDB header:signaling protein
Chain: A: PDB Molecule:myocilin;
PDBTitle: mouse myocilin leucine zipper c-terminal 7 heptad repeat
74c4gokG_
not modelled 8.3 44
PDB header:signaling protein
Chain: G: PDB Molecule:protein unc-119 homolog a;
PDBTitle: the crystal structure of arl2gppnhp in complex with unc119a
75c5y4bA_
not modelled 8.2 27
PDB header:electron transport
Chain: A: PDB Molecule:bola-like protein 2;
PDBTitle: solution structure of yeast fra2
76c5yz0C_
not modelled 8.1 14
PDB header:cell cycle
Chain: C: PDB Molecule:atr-interacting protein;
PDBTitle: cryo-em structure of human atr-atrip complex
77d1l2pa_
not modelled 8.1 17
Fold:Single transmembrane helix
Superfamily:F1F0 ATP synthase subunit B, membrane domain
Family:F1F0 ATP synthase subunit B, membrane domain
78c4u8us_
not modelled 8.1 19
PDB header:oxygen storage/transport
Chain: S: PDB Molecule:globin d chain;
PDBTitle: the crystallographic structure of the giant hemoglobin from2 glossoscolex paulistus at 3.2 a resolution.
79d1wu3i_
not modelled 7.8 26
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
80d2qamg2
not modelled 7.7 13
Fold:Ribosomal protein L6
Superfamily:Ribosomal protein L6
Family:Ribosomal protein L6
81c4j2nA_
not modelled 7.7 20
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
82c1l8dB_
not modelled 7.5 26
PDB header:replication
Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: rad50 coiled-coil zn hook
83c6e2jB_
not modelled 7.4 5
PDB header:protein fibril
Chain: B: PDB Molecule:keratin, type i cytoskeletal 10;
PDBTitle: crystal structure of the heterocomplex between human keratin 1 coil 1b2 containing s233l mutation and wild-type human keratin 10 coil 1b
84c2gd7B_
not modelled 7.4 35
PDB header:transcription
Chain: B: PDB Molecule:hexim1 protein;
PDBTitle: the structure of the cyclin t-binding domain of hexim12 reveals the molecular basis for regulation of3 transcription elongation
85d1r05a_
not modelled 7.3 21
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
86c6dkuA_
not modelled 7.3 18
PDB header:unknown function
Chain: A: PDB Molecule:vp35;
PDBTitle: crystal structure of myotis vp35 mutant of interferon inhibitory2 domain
87c4lwsB_
not modelled 7.3 14
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
88c5jffD_
not modelled 7.3 17
PDB header:transferase
Chain: D: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict mutant g55r in complex with ecfica
89d1gs9a_
not modelled 7.2 20
Fold:Four-helical up-and-down bundle
Superfamily:Apolipoprotein
Family:Apolipoprotein
90c4y66D_
not modelled 7.1 22
PDB header:cell cycle
Chain: D: PDB Molecule:putative tbpip family protein;
PDBTitle: crystal structure of giardia lamblia hop2-mnd1 complex
91c4wj3F_
not modelled 6.9 24
PDB header:ligase/rna
Chain: F: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
92c5jy5A_
not modelled 6.8 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin 1 from cryptococcus neoformans at 1.82 angstroms resolution
93c4aflA_
not modelled 6.8 31
PDB header:cell cycle
Chain: A: PDB Molecule:inhibitor of growth protein 4;
PDBTitle: the crystal structure of the ing4 dimerization domain2 reveals the functional organization of the ing family of3 chromatin binding proteins.
94c1ci6B_
not modelled 6.7 22
PDB header:transcription
Chain: B: PDB Molecule:transcription factor c/ebp beta;
PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer
95d1neia_
not modelled 6.6 29
Fold:Hypothetical protein YoaG
Superfamily:Hypothetical protein YoaG
Family:Hypothetical protein YoaG
96d2gtsa1
not modelled 6.5 26
Fold:Ferritin-like
Superfamily:HP0062-like
Family:HP0062-like
97c2xgjA_
not modelled 6.4 12
PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance
98c4fmyE_
not modelled 6.4 10
PDB header:viral protein
Chain: E: PDB Molecule:dna stabilization protein;
PDBTitle: hk620 tail needle crystal form i
99d1b5la_
not modelled 6.3 10
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)

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