Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2147c_(-)_2406126_2406851
DateMon Aug 5 13:25:27 BST 2019
Unique Job ID41fad7dcf658a13b
SequenceVNSHCSHTFI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.448 Y:31.493 Z:34.779
Model (left) based on template c3zihB_
Top template information
PDB header:cell cycle
Chain: B: PDB Molecule:cell division protein sepf;
PDBTitle: bacillus subtilis sepf, c-terminal domain
Confidence and coverage
Confidence:100.0% Coverage: 32%
78 residues ( 32% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 56% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3zihB_
100.0 32
PDB header:cell cycle
Chain: B: PDB Molecule:cell division protein sepf;
PDBTitle: bacillus subtilis sepf, c-terminal domain
2c3p04A_
100.0 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized bcr;
PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8
3c3p04B_
99.9 37
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized bcr;
PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8
4c3zigA_
98.0 15
PDB header:cell cycle
Chain: A: PDB Molecule:sepf-like protein;
PDBTitle: sepf-like protein from pyrococcus furiosus
5c3zieC_
97.3 19
PDB header:cell cycle
Chain: C: PDB Molecule:sepf-like protein;
PDBTitle: sepf-like protein from archaeoglobus fulgidus
6c3mioA_
50.7 16
PDB header:lyase
Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00
7c4p6dA_
46.8 17
PDB header:lyase
Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: structure of ribb complexed with po4 ion
8d1tksa_
42.2 19
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
9d1k4ia_
39.9 24
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
10c4i14B_
38.7 20
PDB header:hydrolase, lyase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribba;
PDBTitle: crystal structure of mtb-riba2 (rv1415)
11c4ffjA_
34.2 20
PDB header:lyase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribba;
PDBTitle: the crystal structure of spdhbps from s.pneumoniae
12d1snna_
31.1 11
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
13c6nhlB_
29.4 13
PDB header:lyase
Chain: B: PDB Molecule:7-carboxy-7-deazaguanine synthase;
PDBTitle: crystal structure of quee from escherichia coli
14c4p3xA_
28.9 14
PDB header:transferase
Chain: A: PDB Molecule:quinolinate synthase a;
PDBTitle: structure of the fe4s4 quinolinate synthase nada from thermotoga2 maritima
15c3b6bF_
28.4 17
PDB header:transferase
Chain: F: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: crystal structure of acanthamoeba polyphaga mimivirus2 nucleoside diphosphate kinase complexed with dgdp
16c2qs0A_
28.4 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:quinolinate synthetase a;
PDBTitle: quinolinate synthase from pyrococcus furiosus
17c3od9B_
26.9 24
PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:putative exported protein;
PDBTitle: crystal structure of plii-ah, periplasmic lysozyme inhibitor of i-type2 lysozyme from aeromonas hydrophyla
18c2k8vA_
26.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin domain-containing protein 12;
PDBTitle: solution structure of oxidised erp18
19c3crw1_
25.2 19
PDB header:hydrolase
Chain: 1: PDB Molecule:xpd/rad3 related dna helicase;
PDBTitle: xpd_apo
20c2nu9E_
24.9 16
PDB header:ligase
Chain: E: PDB Molecule:succinyl-coa synthetase beta chain;
PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form
21c5lklB_
not modelled 23.4 43
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of full-lengh csfv ns3/4a
22d1g57a_
not modelled 22.9 16
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
23c5cpcA_
not modelled 22.7 36
PDB header:cell invasion
Chain: A: PDB Molecule:secreted effector protein sopd;
PDBTitle: crystal structure of sopd, a type iii secreted virulence effector from2 salmonella enterica
24d1pkua1
not modelled 22.6 19
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
25d1wzua1
not modelled 21.8 18
Fold:NadA-like
Superfamily:NadA-like
Family:NadA-like
26c6mnzB_
not modelled 21.7 23
PDB header:lyase
Chain: B: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: crystal structure of ribbx, a two domain 3,4-dihydroxy-2-butanone 4-2 phosphate synthase from a. baumannii.
27c1senA_
not modelled 21.5 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thioredoxin-like protein p19;
PDBTitle: endoplasmic reticulum protein rp19 o95881
28d1sena_
not modelled 21.5 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
29c6g4qB_
not modelled 20.9 24
PDB header:ligase
Chain: B: PDB Molecule:succinate--coa ligase [adp-forming] subunit beta,
PDBTitle: structure of human adp-forming succinyl-coa ligase complex suclg1-2 sucla2
30d1wu7a1
not modelled 20.7 18
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
31d1w7wa_
not modelled 19.5 20
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
32d1be4a_
not modelled 18.7 21
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
33c5x00A_
not modelled 18.3 17
PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: nucleoside diphosphate kinase from vibrio cholerae is a thermolabile2 type ii tetramer
34c2opiB_
not modelled 17.7 30
PDB header:lyase
Chain: B: PDB Molecule:l-fuculose-1-phosphate aldolase;
PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from bacteroides2 thetaiotaomicron
35c2pgsA_
not modelled 17.4 43
PDB header:hydrolase
Chain: A: PDB Molecule:putative deoxyguanosinetriphosphate triphosphohydrolase;
PDBTitle: crystal structure of a putative deoxyguanosinetriphosphate2 triphosphohydrolase from pseudomonas syringae pv. phaseolicola 1448a
36d1q40b_
not modelled 17.3 26
Fold:Cystatin-like
Superfamily:NTF2-like
Family:NTF2-like
37c3m1rF_
not modelled 16.6 20
PDB header:hydrolase
Chain: F: PDB Molecule:formimidoylglutamase;
PDBTitle: the crystal structure of formimidoylglutamase from bacillus2 subtilis subsp. subtilis str. 168
38c6hxqB_
not modelled 16.2 10
PDB header:lyase
Chain: B: PDB Molecule:citryl-coa synthetase large subunit;
PDBTitle: structure of citryl-coa synthetase from hydrogenobacter thermophilus
39c2irpA_
not modelled 16.0 17
PDB header:lyase
Chain: A: PDB Molecule:putative aldolase class 2 protein aq_1979;
PDBTitle: crystal structure of the l-fuculose-1-phosphate aldolase (aq_1979)2 from aquifex aeolicus vf5
40d1nb2a_
not modelled 15.9 20
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
41c5gvdB_
not modelled 15.7 22
PDB header:protein binding
Chain: B: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: human tdrd3 duf1767-ob domains
42d2b8qa1
not modelled 15.7 17
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
43d1s57a_
not modelled 15.2 17
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
44d1eucb1
not modelled 14.9 15
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
45c5chlA_
not modelled 14.4 22
PDB header:chaperone
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 72 homolog;
PDBTitle: structural basis of h2a.z recognition by yl1 histone chaperone2 component of srcap/swr1 chromatin remodeling complex
46d1ehwa_
not modelled 14.3 8
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
47c6melB_
not modelled 14.3 29
PDB header:ligase
Chain: B: PDB Molecule:succinate--coa ligase [adp-forming] subunit beta;
PDBTitle: succinyl-coa synthase from campylobacter jejuni
48c1yj5B_
not modelled 13.8 21
PDB header:transferase
Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain;
PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme
49c1x1qA_
not modelled 13.5 13
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase beta chain;
PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8
50c1ezeA_
not modelled 13.1 44
PDB header:transferase inhibitor
Chain: A: PDB Molecule:cholesteryl ester transferase inhibitor protein;
PDBTitle: structural studies of a baboon (papio sp.) plasma protein2 inhibitor of cholesteryl ester transferase.
51c1w7wF_
not modelled 12.6 20
PDB header:transferase
Chain: F: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: structure and mutational analysis of a plant mitochondrial nucleoside2 diphosphate kinase: identification of residues involved in serine3 phosphorylation and oligomerization.
52c5v6dH_
not modelled 12.4 15
PDB header:transferase
Chain: H: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: crystal structure of nucleoside diphosphate kinase from neisseria2 gonorrhoeae in complex with citrate
53c5iolC_
not modelled 11.8 8
PDB header:transferase
Chain: C: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: crystal structure of nucleoside diphosphate kinase from schistosoma2 mansoni
54c1eucB_
not modelled 11.6 19
PDB header:ligase
Chain: B: PDB Molecule:succinyl-coa synthetase, beta chain;
PDBTitle: crystal structure of dephosphorylated pig heart, gtp-2 specific succinyl-coa synthetase
55c3bg2A_
not modelled 11.2 0
PDB header:hydrolase
Chain: A: PDB Molecule:dgtp triphosphohydrolase;
PDBTitle: crystal structure of deoxyguanosinetriphosphate triphosphohydrolase2 from flavobacterium sp. med217
56c3js9A_
not modelled 11.0 17
PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate kinase family protein;
PDBTitle: crystal structure of nucleoside diphosphate kinase family protein from2 babesia bovis
57d1jo0a_
not modelled 10.7 6
Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
58c4ezbA_
not modelled 10.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of the conserved hypothetical protein from2 sinorhizobium meliloti 1021
59c3f9uA_
not modelled 10.4 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein;
PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis
60c3zvmA_
not modelled 10.4 21
PDB header:hydrolase/transferase/dna
Chain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase;
PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase
61c6b2zS_
not modelled 10.3 44
PDB header:membrane protein
Chain: S: PDB Molecule:atp synthase subunit j, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
62c6b2zi_
not modelled 10.3 44
PDB header:membrane protein
Chain: I: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
63d3bzka2
not modelled 10.1 19
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Tex HhH-containing domain-like
64c3x38B_
not modelled 10.0 6
PDB header:replication regulator
Chain: B: PDB Molecule:mitochondrial morphogenesis protein sld7;
PDBTitle: crystal structure of the c-terminal domain of sld7
65c3nbiA_
not modelled 10.0 27
PDB header:protein binding
Chain: A: PDB Molecule:recq-mediated genome instability protein 1;
PDBTitle: crystal structure of human rmi1 n-terminus
66c4rulA_
not modelled 10.0 18
PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 1;
PDBTitle: crystal structure of full-length e.coli topoisomerase i in complex2 with ssdna
67c6btdA_
not modelled 9.8 14
PDB header:lyase
Chain: A: PDB Molecule:fuculose phosphate aldolase;
PDBTitle: crystal structure of deoxyribose-phosphate aldolase from bacillus2 thuringiensis involved in dispatching the ubiquitous radical sam3 enzyme byproduct 5-deoxyribose
68d2nu7b1
not modelled 9.3 10
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
69c2w31A_
not modelled 9.3 24
PDB header:oxygen transport
Chain: A: PDB Molecule:globin;
PDBTitle: globin domain of geobacter sulfurreducens globin-coupled sensor
70d1wkja1
not modelled 9.2 19
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
71c1oftC_
not modelled 9.1 33
PDB header:bacterial cell division inhibitor
Chain: C: PDB Molecule:hypothetical protein pa3008;
PDBTitle: crystal structure of sula from pseudomonas aeruginosa
72d1ofux_
not modelled 8.9 33
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Bacterial cell division inhibitor SulA
73c2fk5B_
not modelled 8.8 30
PDB header:lyase
Chain: B: PDB Molecule:fuculose-1-phosphate aldolase;
PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from thermus2 thermophilus hb8
74d2j01d2
not modelled 8.7 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
75c4xdsE_
not modelled 8.6 25
PDB header:hydrolase/dna
Chain: E: PDB Molecule:deoxyguanosinetriphosphate triphosphohydrolase;
PDBTitle: deoxyguanosinetriphosphate triphosphohydrolase from escherichia coli2 with nickel
76c4ar0A_
not modelled 8.4 21
PDB header:transport
Chain: A: PDB Molecule:type iv pilus biogenesis and competence protein pilq;
PDBTitle: n0 domain of neisseria meningitidis pilus assembly protein pilq
77c4o0nA_
not modelled 8.3 15
PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: 2.4 angstrom resolution crystal structure of putative nucleoside2 diphosphate kinase from toxoplasma gondii.
78c3ghfA_
not modelled 8.0 19
PDB header:cell cycle
Chain: A: PDB Molecule:septum site-determining protein minc;
PDBTitle: crystal structure of the septum site-determining protein minc from2 salmonella typhimurium
79c5j4aA_
not modelled 8.0 15
PDB header:toxin
Chain: A: PDB Molecule:trna nuclease cdia;
PDBTitle: cdia-ct toxin from burkholderia pseudomallei e479 in complex with2 cognate cdii immunity protein
80c2mn4A_
not modelled 7.8 36
PDB header:de novo protein
Chain: A: PDB Molecule:computational designed protein based on structure template
PDBTitle: nmr solution structure of a computational designed protein based on2 structure template 1cy5
81c3ztqC_
not modelled 7.6 23
PDB header:transferase
Chain: C: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: hexagonal crystal form p61 of the aquifex aeolicus nucleoside2 diphosphate kinase
82c2qdrA_
not modelled 7.5 23
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative dioxygenase (npun_f5605) from nostoc2 punctiforme pcc 73102 at 2.60 a resolution
83c2vlvA_
not modelled 7.5 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin h isoform 2.;
PDBTitle: crystal structure of barley thioredoxin h isoform 2 in partially2 radiation-reduced state
84c2dqbB_
not modelled 7.4 23
PDB header:hydrolase, dna binding protein
Chain: B: PDB Molecule:deoxyguanosinetriphosphate triphosphohydrolase, putative;
PDBTitle: crystal structure of dntp triphosphohydrolase from thermus2 thermophilus hb8, which is homologous to dgtp triphosphohydrolase
85d2ipqx1
not modelled 7.3 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:STY4665 C-terminal domain-like
86c2mdtA_
not modelled 7.3 15
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
87d1h2vc2
not modelled 7.2 17
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
88d2dfaa1
not modelled 6.7 21
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
89d1auaa2
not modelled 6.7 12
Fold:SpoIIaa-like
Superfamily:CRAL/TRIO domain
Family:CRAL/TRIO domain
90c6c8vA_
not modelled 6.7 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme pqq synthesis protein e;
PDBTitle: x-ray structure of pqqe from methylobacterium extorquens
91d1r9wa_
not modelled 6.7 23
Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Replication initiation protein E1
92d1s5qb_
not modelled 6.7 33
Fold:PAH2 domain
Superfamily:PAH2 domain
Family:PAH2 domain
93c3mwdA_
not modelled 6.6 13
PDB header:transferase
Chain: A: PDB Molecule:atp-citrate synthase;
PDBTitle: truncated human atp-citrate lyase with citrate bound
94d1rq8a_
not modelled 6.6 9
Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
95c4uqzB_
not modelled 6.6 67
PDB header:protein transport
Chain: B: PDB Molecule:hsib1;
PDBTitle: coevolution of the atpase clpv, the tssb-tssc sheath and2 the accessory hsie protein distinguishes two type vi3 secretion classes
96d1bl0a2
not modelled 6.6 40
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
97c3ufxG_
not modelled 6.5 23
PDB header:ligase
Chain: G: PDB Molecule:succinyl-coa synthetase beta subunit;
PDBTitle: thermus aquaticus succinyl-coa synthetase in complex with gdp-mn2+
98d1xiqa_
not modelled 6.4 13
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
99c4dutA_
not modelled 6.4 19
PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: the structure of nucleoside diphosphate kinase (ndk) from burkholderia2 thailandensis

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