Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2149c_(yfiH)_2407630_2408382
DateMon Aug 5 13:25:27 BST 2019
Unique Job IDb483546c3df3fc9a
SequenceLLASTRHIAR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.272 Y:49.125 Z:50.688
Model (left) based on template d1t8ha_
Top template information
Fold:CNF1/YfiH-like putative cysteine hydrolases
Superfamily:CNF1/YfiH-like putative cysteine hydrolases
Family:YfiH-like
Confidence and coverage
Confidence:100.0% Coverage: 94%
236 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1t8ha_



100.0 34
Fold:CNF1/YfiH-like putative cysteine hydrolases
Superfamily:CNF1/YfiH-like putative cysteine hydrolases
Family:YfiH-like
2d1xfja_



100.0 34
Fold:CNF1/YfiH-like putative cysteine hydrolases
Superfamily:CNF1/YfiH-like putative cysteine hydrolases
Family:YfiH-like
3d1rv9a_



100.0 37
Fold:CNF1/YfiH-like putative cysteine hydrolases
Superfamily:CNF1/YfiH-like putative cysteine hydrolases
Family:YfiH-like
4d1rw0a_



100.0 36
Fold:CNF1/YfiH-like putative cysteine hydrolases
Superfamily:CNF1/YfiH-like putative cysteine hydrolases
Family:YfiH-like
5d1xafa_



100.0 37
Fold:CNF1/YfiH-like putative cysteine hydrolases
Superfamily:CNF1/YfiH-like putative cysteine hydrolases
Family:YfiH-like
6d2f9zc1



91.5 28
Fold:CNF1/YfiH-like putative cysteine hydrolases
Superfamily:CNF1/YfiH-like putative cysteine hydrolases
Family:CheD-like
7c3giwA_



62.3 13
PDB header:unknown function
Chain: A: PDB Molecule:protein of unknown function duf574;
PDBTitle: crystal structure of a duf574 family protein (sav_2177) from2 streptomyces avermitilis ma-4680 at 1.45 a resolution
8c2qe6B_



60.8 17
PDB header:transferase
Chain: B: PDB Molecule:uncharacterized protein tfu_2867;
PDBTitle: crystal structure of a putative methyltransferase (tfu_2867) from2 thermobifida fusca yx at 1.95 a resolution
9c4adoA_



45.3 14
PDB header:antibiotic resistance
Chain: A: PDB Molecule:far1;
PDBTitle: fusidic acid resistance protein fusb
10c3by0B_



37.0 17
PDB header:ligand binding protein
Chain: B: PDB Molecule:neutrophil gelatinase-associated lipocalin;
PDBTitle: crystal structure of siderocalin (ngal, lipocalin 2) w79a-r81a2 complexed with ferric enterobactin
11c2l5pA_



35.9 9
PDB header:transport protein
Chain: A: PDB Molecule:lipocalin 12;
PDBTitle: solution nmr structure of protein lipocalin 12 from rat epididymis
12c1kjkA_



34.1 30
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: solution structure of the lambda integrase amino-terminal2 domain
13c1jd7A_



33.3 15
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase
14d1z1ba1



31.9 30
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:lambda integrase N-terminal domain
15c3sdsA_



31.2 23
PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase, mitochondrial;
PDBTitle: crystal structure of a mitochondrial ornithine carbamoyltransferase2 from coccidioides immitis
16d1xkia_



30.1 16
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
17d1x71a1



26.9 17
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
18c2pw0A_



24.8 29
PDB header:unknown function
Chain: A: PDB Molecule:prpf methylaconitate isomerase;
PDBTitle: crystal structure of trans-aconitate bound to methylaconitate2 isomerase prpf from shewanella oneidensis
19c2xstA_



23.9 15
PDB header:transport protein
Chain: A: PDB Molecule:lipocalin 15;
PDBTitle: crystal structure of the human lipocalin 15
20c3qkgA_



23.9 15
PDB header:immune system
Chain: A: PDB Molecule:protein ambp;
PDBTitle: crystal structure of alpha-1-microglobulin at 2.3 a resolution
21c3ct4B_



not modelled 23.0 25
PDB header:transferase
Chain: B: PDB Molecule:pts-dependent dihydroxyacetone kinase, dihydroxyacetone-
PDBTitle: structure of dha-kinase subunit dhak from l. lactis
22c2e4jA_



not modelled 22.8 16
PDB header:isomerase
Chain: A: PDB Molecule:prostaglandin-h2 d-isomerase;
PDBTitle: solution structure of mouse lipocalin-type prostaglandin d2 synthase
23c5yq7C_



not modelled 21.3 27
PDB header:photosynthesis
Chain: C: PDB Molecule:cytochrome subunit of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
24c5nghA_



not modelled 21.3 9
PDB header:protein binding
Chain: A: PDB Molecule:odorant binding protein 3;
PDBTitle: structure of odorant binding protein 3 from giant panda (ailuropoda2 melanoleuca)
25c6otvA_



not modelled 21.1 26
PDB header:isomerase
Chain: A: PDB Molecule:putative isomerase ybhh;
PDBTitle: crystal structure of putative isomerase ec2056
26c6p3hB_



not modelled 20.5 34
PDB header:isomerase
Chain: B: PDB Molecule:(4e)-oxalomesaconate delta-isomerase;
PDBTitle: crystal structure of ligu(k66m) bound to substrate
27d1yupa1



not modelled 19.5 4
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
28c3g7kD_



not modelled 19.4 29
PDB header:isomerase
Chain: D: PDB Molecule:3-methylitaconate isomerase;
PDBTitle: crystal structure of methylitaconate-delta-isomerase
29d1np7a2



not modelled 17.8 16
Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
30d1yaca_



not modelled 17.2 18
Fold:Isochorismatase-like hydrolases
Superfamily:Isochorismatase-like hydrolases
Family:Isochorismatase-like hydrolases
31d2h9fa1



not modelled 16.6 26
Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:PA0793-like
32c1h7bA_



not modelled 16.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase large
PDBTitle: structural basis for allosteric substrate specificity regulation in2 class iii ribonucleotide reductases, native nrdd
33d1beba_



not modelled 15.9 4
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
34d1wjpa2



not modelled 15.7 27
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
35c4wwxY_



not modelled 15.0 38
PDB header:hydrolase, ligase
Chain: Y: PDB Molecule:v(d)j recombination-activating protein 2;
PDBTitle: crystal structure of the core rag1/2 recombinase
36c2k23A_



not modelled 14.4 15
PDB header:transport protein
Chain: A: PDB Molecule:lipocalin 2;
PDBTitle: solution structure analysis of the rlcn2
37d2nvma1



not modelled 13.9 21
Fold:XisI-like
Superfamily:XisI-like
Family:XisI-like
38c2r73C_



not modelled 13.3 9
PDB header:transport protein
Chain: C: PDB Molecule:trichosurin;
PDBTitle: crystal structure of the possum milk whey lipocalin2 trichosurin at ph 8.2
39c2n4kA_



not modelled 12.9 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:enterocin-hf;
PDBTitle: solution structure of enterocin hf, an antilisterial bacteriocin2 produced by enterococcus faecium m3k31
40d1eysc_



not modelled 12.8 18
Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Photosynthetic reaction centre (cytochrome subunit)
41c1eysC_



not modelled 12.8 18
PDB header:electron transport
Chain: C: PDB Molecule:photosynthetic reaction center;
PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum
42c2wl8D_



not modelled 12.3 14
PDB header:protein transport
Chain: D: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: x-ray crystal structure of pex19p
43c3bx6A_



not modelled 12.2 9
PDB header:signaling protein
Chain: A: PDB Molecule:alpha-1-acid glycoprotein;
PDBTitle: crystal structure of human alpha 1 acid glycoprotein
44c5b5yA_



not modelled 12.1 10
PDB header:metal binding protein
Chain: A: PDB Molecule:ptlcib4;
PDBTitle: crystal structure of ptlcib4, a homolog of the limiting co2-inducible2 protein lcib
45c1c4gB_



not modelled 12.1 15
PDB header:transferase
Chain: B: PDB Molecule:protein (alpha-d-glucose 1-phosphate phosphoglucomutase);
PDBTitle: phosphoglucomutase vanadate based transition state analog complex
46c5x7yB_



not modelled 11.9 13
PDB header:allergen
Chain: B: PDB Molecule:lipocalin-can f 6 allergen;
PDBTitle: crystal structure of the dog lipocalin allergen can f 6
47d1ew3a_



not modelled 11.7 9
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
48c6fezB_



not modelled 11.6 33
PDB header:viral protein
Chain: B: PDB Molecule:serine protease domain;
PDBTitle: ryegrass mottle virus protease domain
49c1hynQ_



not modelled 11.6 32
PDB header:membrane protein
Chain: Q: PDB Molecule:band 3 anion transport protein;
PDBTitle: crystal structure of the cytoplasmic domain of human erythrocyte band-2 3 protein
50c3grfA_



not modelled 11.6 16
PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: x-ray structure of ornithine transcarbamoylase from giardia2 lamblia
51d1hk8a_



not modelled 11.5 16
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
52c1hk8A_



not modelled 11.5 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity regulation in2 class iii ribonucleotide reductases: nrdd in complex with dgtp
53c1bagA_



not modelled 11.2 9
PDB header:alpha-amylase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose
54d2i5nc1



not modelled 11.0 36
Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Photosynthetic reaction centre (cytochrome subunit)
55c2jblC_



not modelled 11.0 36
PDB header:electron transport
Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c subunit;
PDBTitle: photosynthetic reaction center from blastochloris viridis
56d1hynp_



not modelled 10.8 32
Fold:Phoshotransferase/anion transport protein
Superfamily:Phoshotransferase/anion transport protein
Family:Anion transport protein, cytoplasmic domain
57c3cqrB_



not modelled 10.7 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:violaxanthin de-epoxidase, chloroplast;
PDBTitle: crystal structure of the lipocalin domain of violaxanthin de-epoxidase2 (vde) at ph5
58d1eg7a_



not modelled 10.6 30
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
59c3lyvF_



not modelled 10.5 50
PDB header:chaperone
Chain: F: PDB Molecule:ribosome-associated factor y;
PDBTitle: crystal structure of a domain of ribosome-associated factor y from2 streptococcus pyogenes serotype m6. northeast structural genomics3 consortium target id dr64a
60d2ch5a2



not modelled 10.3 16
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
61c6rdu9_



not modelled 9.9 17
PDB header:proton transport
Chain: 9: PDB Molecule:asa-9: polytomella f-atp synthase associated subunit 9;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1e,2 monomer-masked refinement
62c3jbxB_



not modelled 9.7 33
PDB header:recombination/dna
Chain: B: PDB Molecule:v(d)j recombination-activating protein 2;
PDBTitle: cryo-electron microscopy structure of rag signal end complex (c22 symmetry)
63d1duvg2



not modelled 9.6 20
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
64c3l4rA_



not modelled 9.4 9
PDB header:allergen, lipid binding protein
Chain: A: PDB Molecule:minor allergen can f 2;
PDBTitle: crystal structure of the dog lipocalin allergen can f 2 and2 implications for cross-reactivity to the cat allergen fel d 4
65c3do6B_



not modelled 9.3 43
PDB header:ligase
Chain: B: PDB Molecule:formate--tetrahydrofolate ligase;
PDBTitle: crystal structure of putative formyltetrahydrofolate synthetase2 (tm1766) from thermotoga maritima at 1.85 a resolution
66c2z8nB_



not modelled 9.3 17
PDB header:lyase
Chain: B: PDB Molecule:27.5 kda virulence protein;
PDBTitle: structural basis for the catalytic mechanism of phosphothreonine lyase
67c2hfqA_



not modelled 9.1 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: nmr structure of protein ne1680 from nitrosomonas europaea:2 northeast structural genomics consortium target net5
68d2hfqa1



not modelled 9.1 14
Fold:NE1680-like
Superfamily:NE1680-like
Family:NE1680-like
69d2nlva1



not modelled 8.9 21
Fold:XisI-like
Superfamily:XisI-like
Family:XisI-like
70c4oh7B_



not modelled 8.6 22
PDB header:transferase
Chain: B: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase from brucella2 melitensis
71d1oi2a_



not modelled 8.5 24
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DAK1
72d1gm6a_



not modelled 8.5 7
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
73c2lf3A_



not modelled 8.5 21
PDB header:signaling protein
Chain: A: PDB Molecule:effector protein hopab3;
PDBTitle: solution nmr structure of hoppmal_281_385 from pseudomonas syringae2 pv. maculicola str. es4326, midwest center for structural genomics3 target apc40104.5 and northeast structural genomics consortium target4 pst2a
74c4r0bA_



not modelled 8.3 7
PDB header:lipid binding protein
Chain: A: PDB Molecule:glycodelin;
PDBTitle: structure of dimeric human glycodelin
75d1jzua_



not modelled 8.2 13
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
76c4e5gB_



not modelled 8.0 15
PDB header:viral protein, transcription
Chain: B: PDB Molecule:polymerase protein pa;
PDBTitle: crystal structure of avian influenza virus pan bound to compound 2
77d1gd0a_



not modelled 8.0 16
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
78d2ddza1



not modelled 7.9 11
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:PH0223-like
79c3rlhA_



not modelled 7.9 33
PDB header:hydrolase
Chain: A: PDB Molecule:sphingomyelin phosphodiesterase d lisictox-alphaia1a;
PDBTitle: crystal structure of a class ii phospholipase d from loxosceles2 intermedia venom
80d1znda1



not modelled 7.9 13
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
81c3cjxE_



not modelled 7.6 15
PDB header:unknown function
Chain: E: PDB Molecule:protein of unknown function with a cupin-like fold;
PDBTitle: crystal structure of a protein of unknown function with a cupin-like2 fold (reut_b4571) from ralstonia eutropha jmp134 at 2.60 a resolution
82c6n5uC_



not modelled 7.6 0
PDB header:metal binding protein
Chain: C: PDB Molecule:protein sco1 homolog 1, mitochondrial;
PDBTitle: crystal structure of arabidopsis thaliana scoi with copper bound
83c3jr7A_



not modelled 7.2 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized egv family protein cog1307;
PDBTitle: the crystal structure of the protein of degv family cog1307 with2 unknown function from ruminococcus gnavus atcc 29149
84c5f6zD_



not modelled 7.2 11
PDB header:fluorescent protein
Chain: D: PDB Molecule:sandercyanin fluorescent protein;
PDBTitle: sandercyanin fluorescent protein purified from sander vitreus
85c2qlcC_



not modelled 7.1 18
PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein radc homolog;
PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls
86d2p62a1



not modelled 7.0 12
Fold:PH0156-like
Superfamily:PH0156-like
Family:PH0156-like
87c3d7qB_



not modelled 7.0 11
PDB header:unknown function
Chain: B: PDB Molecule:xisi protein-like;
PDBTitle: crystal structure of a xisi-like protein (npun_ar114) from nostoc2 punctiforme pcc 73102 at 2.30 a resolution
88c2yhbA_



not modelled 7.0 20
PDB header:rna binding protein
Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2;
PDBTitle: crystal structure of the n. crassa qde-2 ago mid-piwi domains
89c5a4jC_



not modelled 6.9 33
PDB header:ligase
Chain: C: PDB Molecule:formate--tetrahydrofolate ligase;
PDBTitle: crystal structure of fthfs1 from t.acetoxydans re1
90c2w37A_



not modelled 6.8 20
PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase, catabolic;
PDBTitle: crystal structure of the hexameric catabolic ornithine2 transcarbamylase from lactobacillus hilgardii
91d1rvv1_



not modelled 6.6 18
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
92c4oddB_



not modelled 6.6 12
PDB header:allergen
Chain: B: PDB Molecule:lipocalin allergen;
PDBTitle: crystal structure of a dog lipocalin allergen
93c2yhaA_



not modelled 6.5 20
PDB header:rna binding protein
Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2;
PDBTitle: crystal structure of the n. crassa qde-2 ago mid-piwi2 domains
94c4ic5B_



not modelled 6.4 22
PDB header:hydrolase
Chain: B: PDB Molecule:protease do-like 5, chloroplastic;
PDBTitle: crystal structure of deg5
95d1wkta_



not modelled 6.3 29
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Yeast killer toxin
96d2nu7b1



not modelled 6.3 9
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
97c4fgpB_



not modelled 6.3 21
PDB header:hydrolase
Chain: B: PDB Molecule:periplasmic protein;
PDBTitle: legionella pneumophila lapg (egta-treated)
98d1vlca_



not modelled 6.2 20
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
99d1saza1



not modelled 6.2 26
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like

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