Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2154c_(ftsW)_2413356_2414930
DateMon Aug 5 13:25:27 BST 2019
Unique Job ID1af6d1312dd15a2d
SequenceVLTRLLRRGT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.424 Y:56.987 Z:60.654
Model (left) based on template c6basA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:peptidoglycan glycosyltransferase roda;
PDBTitle: crystal structure of thermus thermophilus rod shape determining2 protein roda d255a mutant (q5six3_thet8)
Confidence and coverage
Confidence:100.0% Coverage: 56%
293 residues ( 56% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6basA_
100.0 33
PDB header:transferase
Chain: A: PDB Molecule:peptidoglycan glycosyltransferase roda;
PDBTitle: crystal structure of thermus thermophilus rod shape determining2 protein roda d255a mutant (q5six3_thet8)
2c5mg3D_
76.3 13
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
3c2kncB_
65.3 30
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
4c4dveA_
43.0 12
PDB header:transport protein
Chain: A: PDB Molecule:biotin transporter bioy;
PDBTitle: crystal structure at 2.1 a of the s-component for biotin from an ecf-2 type abc transporter
5c2v50A_
42.3 25
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein mexb;
PDBTitle: the missing part of the bacterial mexab-oprm system: structural2 determination of the multidrug exporter mexb
6c2mr7A_
42.1 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: apo structure of the peptidyl carrier protein domain 7 of the2 teicoplanin producing non-ribosomal peptide synthetase
7c5zazA_
36.5 21
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
8d2azea1
33.3 40
Fold:E2F-DP heterodimerization region
Superfamily:E2F-DP heterodimerization region
Family:DP dimerization segment
9c2rmzA_
29.5 24
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
10c4pxhF_
29.2 23
PDB header:oxidoreductase/protein binding
Chain: F: PDB Molecule:peptide synthetase;
PDBTitle: structure of p450sky (cyp163b3), a cytochrome p450 from skyllamycin2 biosynthesis in complex with a peptidyl carrier protein domain
11c5lq3F_
28.9 11
PDB header:transport protein
Chain: F: PDB Molecule:cmeb;
PDBTitle: structures and transport dynamics of the campylobacter jejuni2 multidrug efflux pump cmeb
12c6iedA_
27.2 17
PDB header:membrane protein
Chain: A: PDB Molecule:heme a synthase;
PDBTitle: crystal structure of heme a synthase from bacillus subtilis
13c4quvB_
27.1 10
PDB header:oxidoreductase, membrane protein
Chain: B: PDB Molecule:delta(14)-sterol reductase;
PDBTitle: structure of an integral membrane delta(14)-sterol reductase
14c5vreB_
26.7 10
PDB header:transport protein
Chain: B: PDB Molecule:putative integral membrane protein;
PDBTitle: crystal structure of a lysosomal potassium-selective channel tmem1752 homolog from chamaesiphon minutus
15c5u3hA_
26.0 17
PDB header:ligase
Chain: A: PDB Molecule:hmwp2 nonribosomal peptide synthetase;
PDBTitle: solution structure of apo pcp1 from yersiniabactin synthetase
16d3dtua1
25.1 21
Fold:Cytochrome c oxidase subunit I-like
Superfamily:Cytochrome c oxidase subunit I-like
Family:Cytochrome c oxidase subunit I-like
17d2pnga1
24.7 21
Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
18c5zk4D_
22.7 17
PDB header:transferase
Chain: D: PDB Molecule:disa protein;
PDBTitle: the structure of dszs acyltransferase with carrier protein
19c4il3B_
21.1 15
PDB header:hydrolase
Chain: B: PDB Molecule:ste24p;
PDBTitle: crystal structure of s. mikatae ste24p
20c4aq5A_
20.3 18
PDB header:membrane protein
Chain: A: PDB Molecule:acetylcholine receptor subunit alpha;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
21c2bg9A_
not modelled 20.3 18
PDB header:ion channel/receptor
Chain: A: PDB Molecule:acetylcholine receptor protein, alpha chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
22d2gdwa1
not modelled 19.5 26
Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Peptidyl carrier domain
23c2mawA_
not modelled 19.2 19
PDB header:membrane protein
Chain: A: PDB Molecule:neuronal acetylcholine receptor subunit alpha-7;
PDBTitle: nmr structures of the alpha7 nachr transmembrane domain.
24c1m56G_
not modelled 17.7 19
PDB header:oxidoreductase
Chain: G: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobactor2 sphaeroides (wild type)
25c5ejdK_
not modelled 16.8 19
PDB header:biosynthetic protein
Chain: K: PDB Molecule:tqaa;
PDBTitle: the crystal structure of holo t3ct
26c5mtiA_
not modelled 16.8 27
PDB header:transport protein
Chain: A: PDB Molecule:phosphopantetheine-binding protein;
PDBTitle: bamb_5917 acyl-carrier protein
27c4aq9E_
not modelled 15.3 15
PDB header:membrane protein
Chain: E: PDB Molecule:acetylcholine receptor gamma subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time- resolved2 electron cryo-microscopy (open class)
28c2bg9E_
not modelled 15.3 15
PDB header:ion channel/receptor
Chain: E: PDB Molecule:acetylcholine receptor protein, gamma chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
29c5msvB_
not modelled 13.9 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioester reductase domain-containing protein;
PDBTitle: structure of the phosphopantetheine modified pcp-r didomain of2 carboxylic acid reductase (car) in complex with nadp
30c6iu3A_
not modelled 13.7 15
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
31c4rfsT_
not modelled 13.5 8
PDB header:hydrolase, transport protein
Chain: T: PDB Molecule:energy-coupling factor transporter transmembrane protein
PDBTitle: structure of a pantothenate energy coupling factor transporter
32c4i4dA_
not modelled 13.5 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:peptide synthetase nrps type ii-pcp;
PDBTitle: structure of blmi, a type-ii acyl-carrier-protein from streptomyces2 verticillus involved in bleomycin biosynthesis
33c2m59A_
not modelled 13.1 26
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
34c2m59B_
not modelled 13.1 26
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
35c4ev6E_
not modelled 12.9 24
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
36c6ithA_
not modelled 12.9 25
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
37c6o7xa_
not modelled 12.8 16
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
38c5gasN_
not modelled 12.6 14
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
39c3rkoL_
not modelled 12.1 11
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
40c2zxeG_
not modelled 12.0 41
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
41c1oy8A_
not modelled 12.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
42c4qndA_
not modelled 11.7 19
PDB header:membrane protein
Chain: A: PDB Molecule:chemical transport protein;
PDBTitle: crystal structure of a semisweet
43c5kxiC_
not modelled 11.4 16
PDB header:transport protein
Chain: C: PDB Molecule:neuronal acetylcholine receptor subunit beta-2;
PDBTitle: x-ray structure of the human alpha4beta2 nicotinic receptor
44c2jo1A_
not modelled 11.3 41
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
45c4khbE_
not modelled 11.2 36
PDB header:transcription/replication
Chain: E: PDB Molecule:uncharacterized protein spt16d;
PDBTitle: structure of the spt16d pob3n heterodimer
46c2ywxA_
not modelled 11.0 14
PDB header:lyase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii
47c3n23E_
not modelled 10.6 47
PDB header:hydrolase
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump
48c2cq8A_
not modelled 10.5 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase;
PDBTitle: solution structure of rsgi ruh-033, a pp-binding domain of2 10-fthfdh from human cdna
49c2mkvA_
not modelled 10.5 35
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
50c2jp3A_
not modelled 10.1 29
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
51c4heaT_
not modelled 9.7 11
PDB header:oxidoreductase
Chain: T: PDB Molecule:nadh-quinone oxidoreductase subunit 12;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
52c2e8mA_
not modelled 9.6 15
PDB header:signaling protein
Chain: A: PDB Molecule:epidermal growth factor receptor kinase
PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8
53d1qlec_
not modelled 9.4 16
Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
54c6b2zA_
not modelled 9.3 14
PDB header:membrane protein
Chain: A: PDB Molecule:atp synthase protein 8;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
55c6b2zL_
not modelled 9.3 14
PDB header:membrane protein
Chain: L: PDB Molecule:atp synthase protein 8;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
56d1q90b_
not modelled 9.3 8
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
57c6hcyA_
not modelled 9.2 14
PDB header:membrane protein
Chain: A: PDB Molecule:metalloreductase steap4;
PDBTitle: human steap4 bound to nadp, fad, heme and fe(iii)-nta.
58c5zgbI_
not modelled 9.2 54
PDB header:photosynthesis
Chain: I: PDB Molecule:psai;
PDBTitle: cryo-em structure of the red algal psi-lhcr
59c5zghI_
not modelled 9.2 54
PDB header:photosynthesis
Chain: I: PDB Molecule:psai;
PDBTitle: cryo-em structure of the red algal psi-lhcr
60c1v55B_
not modelled 9.0 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state
61c2kogA_
not modelled 8.7 8
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
62c5d7tH_
not modelled 8.6 14
PDB header:transport protein
Chain: H: PDB Molecule:energy-coupling factor transporter transmembrane protein
PDBTitle: folate ecf transporter: apo state
63c1q90G_
not modelled 8.5 70
PDB header:photosynthesis
Chain: G: PDB Molecule:cytochrome b6f complex subunit petg;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
64d1q90g_
not modelled 8.5 70
Fold:Single transmembrane helix
Superfamily:PetG subunit of the cytochrome b6f complex
Family:PetG subunit of the cytochrome b6f complex
65c2y69Q_
not modelled 8.4 7
PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
66c6btmC_
not modelled 8.2 10
PDB header:membrane protein
Chain: C: PDB Molecule:alternative complex iii subunit c;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
67c4wd7A_
not modelled 8.2 14
PDB header:membrane protein
Chain: A: PDB Molecule:bestrophin domain protein;
PDBTitle: crystal structure of a bacterial bestrophin homolog from klebsiella2 pneumoniae by zn-sad phasing
68c6owsB_
not modelled 8.0 17
PDB header:membrane protein
Chain: B: PDB Molecule:efflux pump membrane transporter;
PDBTitle: cryo-em structure of an acinetobacter baumannii multidrug efflux pump
69c6fosI_
not modelled 7.9 54
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: cyanidioschyzon merolae photosystem i
70d1v54d_
not modelled 7.8 7
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit IV
Family:Mitochondrial cytochrome c oxidase subunit IV
71c4kppA_
not modelled 7.6 17
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
72c6d0hB_
not modelled 7.6 21
PDB header:toxin
Chain: B: PDB Molecule:pars: cog5642 (duf2384) antitoxin;
PDBTitle: part: prs adp-ribosylating toxin bound to cognate antitoxin pars
73c2micA_
not modelled 7.6 15
PDB header:membrane protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
74c2micB_
not modelled 7.6 15
PDB header:membrane protein
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
75c2fq1A_
not modelled 7.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:isochorismatase;
PDBTitle: crystal structure of the two-domain non-ribosomal peptide synthetase2 entb containing isochorismate lyase and aryl-carrier protein domains
76c6hwhX_
not modelled 7.4 16
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
77c4byt7_
not modelled 7.3 12
PDB header:ribosome
Chain: 7: PDB Molecule:suppressor protein stm1;
PDBTitle: cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
78c3u5ch_
not modelled 7.3 12
PDB header:ribosome
Chain: H: PDB Molecule:40s ribosomal protein s7-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
79c4byl7_
not modelled 7.3 12
PDB header:ribosome
Chain: 7: PDB Molecule:suppressor protein stm1;
PDBTitle: cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
80c2zqpY_
not modelled 7.3 15
PDB header:protein transport
Chain: Y: PDB Molecule:preprotein translocase secy subunit;
PDBTitle: crystal structure of secye translocon from thermus2 thermophilus
81c5wb5A_
not modelled 7.3 25
PDB header:translation
Chain: A: PDB Molecule:putative eukaryotic translation initiation factor eif-4e;
PDBTitle: leishmania if4e-1 bound to leishmania 4e-ip1
82c5mjrA_
not modelled 7.0 24
PDB header:photosynthesis
Chain: A: PDB Molecule:protein thf1;
PDBTitle: structure of psb29 at 1.55a
83c1m57H_
not modelled 7.0 10
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))
84c4mt1A_
not modelled 6.8 13
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
85c5ujqA_
not modelled 6.6 62
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin;
PDBTitle: nmr solution structure of the two-component bacteriocin cbnxy
86d2e74a1
not modelled 6.6 8
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
87c2ifmA_
not modelled 6.6 17
PDB header:virus
Chain: A: PDB Molecule:pf1 filamentous bacteriophage;
PDBTitle: pf1 filamentous bacteriophage: refinement of a molecular2 model by simulated annealing using 3.3 angstroms3 resolution x-ray fibre diffraction data
88c1ql1A_
not modelled 6.6 17
PDB header:virus
Chain: A: PDB Molecule:pf1 bacteriophage coat protein b;
PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly
89c5sxpG_
not modelled 6.6 30
PDB header:signaling protein/ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
90c6j5bC_
not modelled 6.5 35
PDB header:transcription/dna
Chain: C: PDB Molecule:protein phosphate starvation response 1;
PDBTitle: structural basis for the target dna recognition and binding by the myb2 domain of phosphate starvation response regulator 1
91c5x3xq_
not modelled 6.5 15
PDB header:transport protein
Chain: Q: PDB Molecule:uncharacterized protein cbiq;
PDBTitle: 2.8a resolution structure of a cobalt energy-coupling factor2 transporter-cbimqo
92d1xmeb2
not modelled 6.5 35
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
93c5kxiA_
not modelled 6.5 17
PDB header:transport protein
Chain: A: PDB Molecule:neuronal acetylcholine receptor subunit alpha-4;
PDBTitle: x-ray structure of the human alpha4beta2 nicotinic receptor
94c1ar1B_
not modelled 6.5 15
PDB header:complex (oxidoreductase/antibody)
Chain: B: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment
95c1qleB_
not modelled 6.5 15
PDB header:oxidoreductase/immune system
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit cytochrome2 c oxidase in the completely oxidized state complexed with an antibody3 fv fragment
96d2h8pc1
not modelled 6.4 22
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
97c5sxpF_
not modelled 6.4 37
PDB header:signaling protein/ligase
Chain: F: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
98c5n6mA_
not modelled 6.3 14
PDB header:membrane protein
Chain: A: PDB Molecule:apolipoprotein n-acyltransferase;
PDBTitle: structure of the membrane integral lipoprotein n-acyltransferase lnt2 from p. aeruginosa
99c6dmoA_
not modelled 6.3 12
PDB header:protein binding
Chain: A: PDB Molecule:protein patched homolog 1;
PDBTitle: cryo-em structure of human ptch1 with three mutations2 l282q/t500f/p504l

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below