Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2159c_(-)_2420639_2421673
DateMon Aug 5 13:25:28 BST 2019
Unique Job IDa78aeaaf2bfc3b03
SequenceMKFVNHIEPV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.619 Y:37.832 Z:53.566
Model (left) based on template d2prra1
Top template information
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
Confidence and coverage
Confidence:100.0% Coverage: 47%
162 residues ( 47% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
256 residues ( 74%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2prra1



100.0 16
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
2d2oyoa1



100.0 18
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
3d2pfxa1



100.0 14
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
4c3c1lB_



100.0 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105;
PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution
5c6ohiA_



100.0 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:debrominase bmp8;
PDBTitle: crystal structure of the debrominase bmp8 (apo)
6c3lvyB_



100.0 16
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans
7d2ouwa1



99.9 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
8d2gmya1



99.9 10
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
9d2o4da1



99.9 17
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
10c2qeuA_



99.6 20
PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
11c5dj4D_



99.6 14
PDB header:signaling protein
Chain: D: PDB Molecule:sestrin-2;
PDBTitle: leucine-bound sestrin2 from homo sapiens
12d2cwqa1



99.4 18
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
13c5dipB_



99.4 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase ahpd;
PDBTitle: crystal structure of lpg0406 in reduced form from legionella2 pneumophila
14c1p8cD_



99.3 18
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima
15d1vkea_



99.3 22
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
16c5gzxD_



99.2 20
PDB header:hydrolase
Chain: D: PDB Molecule:(r)-2-haloacid dehalogenase;
PDBTitle: the complex structure of d-2-haloacid dehalogenase mutant with d-2-cpa
17c3beyC_



99.2 18
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
18d2q0ta1



99.1 14
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
19c3d7iB_



99.1 9
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution
20d1vkeb_



98.9 18
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
21d1knca_



not modelled 98.8 25
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
22c3bjxB_



not modelled 98.2 18
PDB header:hydrolase
Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi;
PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3
23c4n2xF_



not modelled 98.0 23
PDB header:hydrolase
Chain: F: PDB Molecule:dl-2-haloacid dehalogenase;
PDBTitle: crystal structure of dl-2-haloacid dehalogenase
24c4g9qA_



not modelled 97.9 11
PDB header:lyase
Chain: A: PDB Molecule:4-carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of a 4-carboxymuconolactone decarboxylase
25d2af7a1



not modelled 97.3 15
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
26c6igzK_



not modelled 42.8 32
PDB header:plant protein
Chain: K: PDB Molecule:psak;
PDBTitle: structure of psi-lhci
27d1abaa_



not modelled 36.0 28
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
28c1t3bA_



not modelled 32.3 33
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: x-ray structure of dsbc from haemophilus influenzae
29c1v57A_



not modelled 31.5 25
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg;
PDBTitle: crystal structure of the disulfide bond isomerase dsbg
30d1t3ba1



not modelled 29.8 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
31c4npbA_



not modelled 29.8 33
PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide isomerase ii;
PDBTitle: the crystal structure of thiol:disulfide interchange protein dsbc from2 yersinia pestis co92
32c4ml1D_



not modelled 29.2 25
PDB header:isomerase
Chain: D: PDB Molecule:dsbp;
PDBTitle: disulfide isomerase (dsbp) from multidrug resistance inca/c2 transferable plasmid in oxidized state (p212121 space group)
33d1qpza1



not modelled 27.5 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
34c3dvwA_



not modelled 27.2 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis
35c1jzdA_



not modelled 26.8 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: dsbc-dsbdalpha complex
36c3gv1A_



not modelled 26.7 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:disulfide interchange protein;
PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae
37c3hd5A_



not modelled 24.3 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis
38c4jr6A_



not modelled 23.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible conserved membrane or secreted protein;
PDBTitle: crystal structure of dsba from mycobacterium tuberculosis (reduced)
39c4p3yB_



not modelled 23.1 29
PDB header:translation/oxidoreductase
Chain: B: PDB Molecule:thiol:disulfide interchange protein;
PDBTitle: crystal structure of acinetobacter baumannii dsba in complex with ef-2 tu
40d1eeja1



not modelled 23.0 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
41d1beda_



not modelled 23.0 25
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbA-like
42c3bciA_



not modelled 22.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:disulfide bond protein a;
PDBTitle: crystal structure of staphylococcus aureus dsba
43c3l9vE_



not modelled 21.8 33
PDB header:oxidoreductase
Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin;
PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga
44d1efaa1



not modelled 21.8 18
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
45c5h1nB_



not modelled 21.5 21
PDB header:unknown function
Chain: B: PDB Molecule:upf0253 protein yaep;
PDBTitle: crystal structure of sf173 from shigella flexneri
46c3ic4A_



not modelled 21.1 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin (grx-1);
PDBTitle: the crystal structure of the glutaredoxin(grx-1) from archaeoglobus2 fulgidus
47c3h93A_



not modelled 20.7 33
PDB header:transcription regulator
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of pseudomonas aeruginosa dsba
48c6eezC_



not modelled 19.9 14
PDB header:isomerase
Chain: C: PDB Molecule:dsba-like disulfide oxidoreductase;
PDBTitle: crystal structure of the thiol-disulfide exchange protein alpha-dsba22 from wolbachia pipientis
49c4xvwK_



not modelled 19.7 25
PDB header:isomerase
Chain: K: PDB Molecule:dsba-like protein;
PDBTitle: crystal structure of proteus mirabilis scsc in a compact conformation
50c3f4tA_



not modelled 19.3 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of wolbachia pipientis alpha-dsba1 c97a/c146a
51c3c7mB_



not modelled 19.0 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like;
PDBTitle: crystal structure of reduced dsbl
52d1v58a1



not modelled 18.9 25
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
53c6ijjK_



not modelled 18.7 27
PDB header:membrane protein
Chain: K: PDB Molecule:psak;
PDBTitle: photosystem i of chlamydomonas reinhardtii
54c4pwoA_



not modelled 18.7 19
PDB header:structural genomics
Chain: A: PDB Molecule:dsba;
PDBTitle: crystal structure of dsba from the gram positive bacterium2 corynebacterium diphtheriae
55c2remB_



not modelled 18.6 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:disulfide oxidoreductase;
PDBTitle: crystal structure of oxidoreductase dsba from xylella fastidiosa
56d1fvka_



not modelled 18.4 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbA-like
57c5kbcA_



not modelled 18.3 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:dsba;
PDBTitle: crystal structure of chlamydia trachomatis dsba
58c6dxnC_



not modelled 18.3 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:thiol:disulfide interchange protein;
PDBTitle: 1.95 angstrom resolution crystal structure of dsba disulfide2 interchange protein from klebsiella pneumoniae.
59c4p6iB_



not modelled 18.1 10
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endoribonuclease cas2;
PDBTitle: crystal structure of the cas1-cas2 complex from escherichia coli
60c3gmfA_



not modelled 17.8 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein-disulfide isomerase;
PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans
61c3mcnA_



not modelled 17.5 9
PDB header:transferase
Chain: A: PDB Molecule:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
PDBTitle: crystal structure of the 6-hyroxymethyl-7,8-dihydropterin2 pyrophosphokinase dihydropteroate synthase bifunctional enzyme from3 francisella tularensis
62d2bjca1



not modelled 17.5 18
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
63c4k2dA_



not modelled 17.4 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein;
PDBTitle: crystal structure of burkholderia pseudomallei dsba
64c4n30A_



not modelled 17.2 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein disulfide isomerase;
PDBTitle: crystal structure of pseudomonas aeruginosa dsba2
65c4fybA_



not modelled 17.1 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein (dsbc);
PDBTitle: structural and functional characterizations of a thioredoxin-fold2 protein from helicobacter pylori
66c3lgcA_



not modelled 16.8 26
PDB header:unknown function
Chain: A: PDB Molecule:glutaredoxin 1;
PDBTitle: crystal structure of glutaredoxin 1 from francisella tularensis
67d2hsga1



not modelled 16.8 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
68c2e7pC_



not modelled 16.8 22
PDB header:electron transport
Chain: C: PDB Molecule:glutaredoxin;
PDBTitle: crystal structure of the holo form of glutaredoxin c1 from populus2 tremula x tremuloides
69c4z7xA_



not modelled 16.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:mdba;
PDBTitle: mdba protein, a thiol-disulfide oxidoreductase from actinomyces oris.
70c4tr1A_



not modelled 16.1 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin 3;
PDBTitle: crystal structure of gsh-bound cgrx2/c15s
71c3feuA_



not modelled 15.9 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri
72d1z6ma1



not modelled 15.8 29
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbA-like
73c4r33A_



not modelled 15.4 33
PDB header:lyase
Chain: A: PDB Molecule:nosl;
PDBTitle: x-ray structure of the tryptophan lyase nosl with tryptophan and s-2 adenosyl-l-homocysteine bound
74c3ghaA_



not modelled 15.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:disulfide bond formation protein d;
PDBTitle: crystal structure of etda-treated bdbd (reduced)
75c4jrrC_



not modelled 15.2 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of disulfide bond oxidoreductase dsba1 from2 legionella pneumophila
76c4od7A_



not modelled 15.1 22
PDB header:oxidoreductase/peptide
Chain: A: PDB Molecule:thiol:disulfide interchange protein;
PDBTitle: complex structure of proteus mirablis dsba (c30s) with a non-2 covalently bound peptide pwatcds
77c1nm3B_



not modelled 14.9 33
PDB header:electron transport
Chain: B: PDB Molecule:protein hi0572;
PDBTitle: crystal structure of heamophilus influenza hybrid-prx5
78c3dprD_



not modelled 14.8 100
PDB header:virus
Chain: D: PDB Molecule:protein vp4;
PDBTitle: human rhinovirus 2 bound to a concatamer of the vldl receptor module2 v3
79c1fpn4_



not modelled 14.8 100
PDB header:virus
Chain: 4: PDB Molecule:coat protein vp4;
PDBTitle: human rhinovirus serotype 2 (hrv2)
80c1v9u4_



not modelled 14.8 100
PDB header:virus/receptor
Chain: 4: PDB Molecule:coat protein vp4;
PDBTitle: human rhinovirus 2 bound to a fragment of its cellular2 receptor protein
81c4gxzB_



not modelled 14.7 25
PDB header:isomerase
Chain: B: PDB Molecule:suppression of copper sensitivity protein;
PDBTitle: crystal structure of a periplasmic thioredoxin-like protein from2 salmonella enterica serovar typhimurium
82d1m9ia1



not modelled 14.6 13
Fold:Annexin
Superfamily:Annexin
Family:Annexin
83c1avcA_



not modelled 13.8 13
PDB header:calcium/phospholipid-binding protein
Chain: A: PDB Molecule:annexin vi;
PDBTitle: bovine annexin vi (calcium-bound)
84c3gykC_



not modelled 13.5 29
PDB header:oxidoreductase
Chain: C: PDB Molecule:27kda outer membrane protein;
PDBTitle: the crystal structure of a thioredoxin-like oxidoreductase from2 silicibacter pomeroyi dss-3
85c2lqoA_



not modelled 13.3 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative glutaredoxin rv3198.1/mt3292;
PDBTitle: mrx1 reduced
86d1fova_



not modelled 13.1 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
87d1xgsa1



not modelled 12.7 32
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Methionine aminopeptidase, insert domain
88c2yruA_



not modelled 12.5 17
PDB header:apoptosis
Chain: A: PDB Molecule:steroid receptor rna activator 1;
PDBTitle: solution structure of mouse steroid receptor rna activator2 1 (sra1) protein
89c2jblC_



not modelled 12.4 22
PDB header:electron transport
Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c subunit;
PDBTitle: photosynthetic reaction center from blastochloris viridis
90d1b6aa1



not modelled 12.4 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Methionine aminopeptidase, insert domain
91c2m80A_



not modelled 12.2 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin-8;
PDBTitle: solution structure of yeast dithiol glutaredoxin grx8
92c3hkzP_



not modelled 12.1 80
PDB header:transferase
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
93c2znmA_



not modelled 12.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: oxidoreductase nmdsba3 from neisseria meningitidis
94c1a6bB_



not modelled 11.9 33
PDB header:viral protein/dna
Chain: B: PDB Molecule:zinc finger protein ncp10;
PDBTitle: nmr structure of the complex between the zinc finger2 protein ncp10 of moloney murine leukemia virus and a3 sequence of the psi-packaging domain of hiv-1, 204 structures
95d1uxda_



not modelled 11.9 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
96c3zijA_



not modelled 11.8 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of the thioredoxin-like protein bc3987
97c3nznA_



not modelled 11.8 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1
98c3s63B_



not modelled 11.7 26
PDB header:lipid binding protein
Chain: B: PDB Molecule:saposin-like protein;
PDBTitle: saposin-like protein na-slp-1
99c4qiwP_



not modelled 11.4 50
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below