Phyre 2 Results for RVBD2164c_(-)_2427092

Email	mdejesus@rockefeller.edu
Description	RVBD2164c_(-)_2427092_2428246
Date	Mon Aug 5 13:25:28 BST 2019
Unique Job ID	3e66166f3177b9ad
Sequence	MRAKREAPKS ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:15.367 Y:7.636 Z:9.940

Model (left) based on template d1rutx3

Top template information

Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain

Confidence and coverage

Confidence:

0.1%

Coverage:

4 residues ( 1% of your sequence) have been modelled with 0.1% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

Please note: You must be registered and logged in to use Phyrealarm.

Warning: 87% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M R A K R E A P K S R S S D R R R R A D S P A A A T R R T T T N S A P S R R I R S R A G K T S A P G R Q A R V S R P G P

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence Q T S P M L S P F D R P A P A K N T S Q A K A R A K A R K A K A P K L V R P T P M E R L A A R L T S I D L R P R T L A N

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence K V P F V V L V I G S L G V G L G L T L W L S T D A A E R S Y Q L S N A R E R T R M L Q Q H K E A L E R D V R E A A S A

Secondary structure

SS confidence

Disorder ? ?
?
? ? ? ? ?
? ? ? ?
? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence P A L A E A A R R Q G M I P T R D T A H L V Q D P D G N W V V V G T P K P A D G V P P P P L N T K L P E D P P P P P K P

Secondary structure

SS confidence

Disorder ? ?
? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ?
? ? ? ? ?
?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300

Sequence A A V P L E V P V R V T P G P D D P A P P A R S G P E V L V R T P D G T A T L G G A T H L P T Q A G P Q L P G P V P I P

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360

Sequence G A P G P M P A P P L G A V P S P A P A E N P V P L Q V G A A P P A G L P G P A P V A A T P G L S G G S Q P M V A P P A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 370 . . . . . . . . . 380 . . . .

Sequence P V P A N G E Q F G P V T A P V P T A P G A P R

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered ( 87%)

Alpha helix ( 18%)

Beta strand ( 2%)

TM helix ( 5%)
(View membrane topology prediction)

Domain analysis [Show]