Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2169c_(-)_2431573_2431977
DateMon Aug 5 13:25:29 BST 2019
Unique Job ID7afeb1bfbcbb7cbf
SequenceMPLSDHEQRM ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.092 Y:21.366 Z:25.865
Model (left) based on template c4b4yA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:neuroglobin;
PDBTitle: crystal structure of the neuroglobin from the photosymbiotic2 marine acoel symsagittifera roscoffensis
Confidence and coverage
Confidence: 59.6% Coverage: 22%
29 residues ( 22% of your sequence) have been modelled with 59.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4b4yA_



59.6 21
PDB header:transport protein
Chain: A: PDB Molecule:neuroglobin;
PDBTitle: crystal structure of the neuroglobin from the photosymbiotic2 marine acoel symsagittifera roscoffensis
2d1civa2



47.7 24
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
3d1lvaa3



45.9 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
4c5fqdA_



43.5 15
PDB header:ligase
Chain: A: PDB Molecule:dna damage-binding protein 1;
PDBTitle: structural basis of lenalidomide induced ck1a degradation by the2 crl4crbn ubiquitin ligase
5d1fhjb_



40.8 16
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
6c2pjpA_



40.4 18
PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna
7c6cfzB_



39.7 50
PDB header:nuclear protein
Chain: B: PDB Molecule:dad3;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
8c2x9qA_



39.0 10
PDB header:ligase
Chain: A: PDB Molecule:cyclodipeptide synthetase;
PDBTitle: structure of the mycobacterium tuberculosis protein, rv2275,2 demonstrates that cyclodipeptide synthetases are related3 to type i trna-synthetases.
9d1fsla_



38.0 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
10c5frtC_



36.7 32
PDB header:oxidoreductase
Chain: C: PDB Molecule:dimeric (2fe-2s) protein;
PDBTitle: structure of the fesii (shethna) protein of azotobacter vinelandii
11c3oqvA_



35.7 25
PDB header:protein binding
Chain: A: PDB Molecule:albc;
PDBTitle: albc, a cyclodipeptide synthase from streptomyces noursei
12c1ciiA_



34.9 21
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
13d3bj1b1



34.4 15
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
14c2kq9A_



34.0 32
PDB header:transcription
Chain: A: PDB Molecule:dnak suppressor protein;
PDBTitle: solution structure of dnak suppressor protein from agrobacterium2 tumefaciens c58. northeast structural genomics consortium target3 att12/ontario center for structural proteomics target atc0888
15c6adqC_



33.5 33
PDB header:electron transport
Chain: C: PDB Molecule:cytochrome bc1 complex cytochrome c subunit;
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
16c6eojA_



32.6 24
PDB header:rna binding protein
Chain: A: PDB Molecule:protein cft1;
PDBTitle: polya polymerase module of the cleavage and polyadenylation factor2 (cpf) from saccharomyces cerevisiae
17c5nvkF_



30.5 50
PDB header:translation
Chain: F: PDB Molecule:grb10-interacting gyf protein 1;
PDBTitle: crystal structure of the human 4ehp-gigyf1 complex
18c5zm9D_



30.3 10
PDB header:oxygen transport
Chain: D: PDB Molecule:globin protein;
PDBTitle: crystal structure of hexacoordinated heme protein from anhydrobiotic2 tardigrade at ph 7
19c3oqhB_



30.1 15
PDB header:ligase
Chain: B: PDB Molecule:putative uncharacterized protein yvmc;
PDBTitle: crystal structure of b. licheniformis cdps yvmc-blic
20c1tjlD_



29.5 26
PDB header:transcription
Chain: D: PDB Molecule:dnak suppressor protein;
PDBTitle: crystal structure of transcription factor dksa from e. coli
21c1wsuA_



not modelled 29.3 16
PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna
22c4o8wE_



not modelled 27.1 43
PDB header:structural protein, signaling protein
Chain: E: PDB Molecule:spore germination protein;
PDBTitle: crystal structure of the gerd spore germination protein
23c6ptgB_



not modelled 26.0 41
PDB header:transcription
Chain: B: PDB Molecule:dnak suppressor;
PDBTitle: structure of rna polymerase binding protein and transcriptional2 regulator dks from chlamydia trachomatis d/uw-3/cx
24c3mvcB_



not modelled 25.0 10
PDB header:electron transport
Chain: B: PDB Molecule:globin protein 6;
PDBTitle: high resolution crystal structure of the heme domain of glb-6 from c.2 elegans
25d1wmub_



not modelled 25.0 8
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
26c6bm0A_



not modelled 24.1 27
PDB header:protein binding
Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor subunit 1;
PDBTitle: cryo-em structure of human cpsf-160-wdr33 complex at 3.8 a resolution
27d1spgb_



not modelled 22.7 15
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
28c3fewX_



not modelled 21.6 8
PDB header:immune system
Chain: X: PDB Molecule:colicin s4;
PDBTitle: structure and function of colicin s4, a colicin with a duplicated2 receptor binding domain
29d1b8db_



not modelled 21.4 14
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
30c4tlgB_



not modelled 20.0 26
PDB header:transport protein
Chain: B: PDB Molecule:sec14-like protein 4;
PDBTitle: crystal structure of sec14-like protein 4 (sec14l4)
31c6et5b_



not modelled 20.0 13
PDB header:photosynthesis
Chain: B: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
32c1xrdA_



not modelled 19.6 22
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, alpha chain;
PDBTitle: light-harvesting complex 1 alfa subunit from wild-type2 rhodospirillum rubrum
33d1xrda1



not modelled 19.6 22
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
34c6fahD_



not modelled 19.4 11
PDB header:flavoprotein
Chain: D: PDB Molecule:caffeyl-coa reductase-etf complex subunit carc;
PDBTitle: molecular basis of the flavin-based electron-bifurcating caffeyl-coa2 reductase reaction
35d1xg0c_



not modelled 19.4 16
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
36c2gs0B_



not modelled 19.3 55
PDB header:transcription
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: nmr structure of the complex between the ph domain of the2 tfb1 subunit from tfiih and the activation domain of p53
37c3ei1A_



not modelled 19.0 15
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna damage-binding protein 1;
PDBTitle: structure of hsddb1-drddb2 bound to a 14 bp 6-42 photoproduct containing dna-duplex
38c1o6uA_



not modelled 18.2 19
PDB header:transferase
Chain: A: PDB Molecule:sec14-like protein 2;
PDBTitle: the crystal structure of human supernatant protein factor
39c4uf2A_



not modelled 17.1 17
PDB header:viral protein
Chain: A: PDB Molecule:antiapoptotic membrane protein;
PDBTitle: deerpox virus dpv022 in complex with bax bh3
40c5kk2E_



not modelled 17.1 13
PDB header:membrane protein, transport protein, sig
Chain: E: PDB Molecule:voltage-dependent calcium channel gamma-2 subunit;
PDBTitle: architecture of fully occupied glua2 ampa receptor - tarp complex2 elucidated by single particle cryo-electron microscopy
41c4hpvA_



not modelled 16.8 27
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from sulfolobus2 solfataricus
42d1hlba_



not modelled 16.1 14
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
43c2d46A_



not modelled 15.7 38
PDB header:metal transport
Chain: A: PDB Molecule:calcium channel, voltage-dependent, beta 4
PDBTitle: solution structure of the human beta4a-a domain
44c4ijjA_



not modelled 15.7 41
PDB header:hydrolase
Chain: A: PDB Molecule:putative c4-type zinc finger protein, dksa/trar family;
PDBTitle: structure of transcription factor dksa2 from pseudomonas aeruginosa
45d1ln4a_



not modelled 15.6 29
Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
46c3rq9B_



not modelled 15.4 22
PDB header:tse2-binding protein
Chain: B: PDB Molecule:type vi secretion immunity protein;
PDBTitle: structure of tsi2, a tse2-immunity protein from pseudomonas aeruginosa
47d1ha7b_



not modelled 15.4 14
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
48d1tc3c_



not modelled 15.2 40
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
49d1phnb_



not modelled 15.1 14
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
50c2kncA_



not modelled 14.8 15
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
51c2jo1A_



not modelled 14.6 28
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
52d1s29a_



not modelled 14.2 40
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:La domain
53c3wmmY_



not modelled 14.0 26
PDB header:photosynthesis
Chain: Y: PDB Molecule:lh1 alpha polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
54c3b7qA_



not modelled 13.4 23
PDB header:signaling protein
Chain: A: PDB Molecule:uncharacterized protein ykl091c;
PDBTitle: crystal structure of yeast sec14 homolog sfh1 in complex with2 phosphatidylcholine
55c2jp3A_



not modelled 13.1 25
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
56c2uwjE_



not modelled 13.1 29
PDB header:chaperone
Chain: E: PDB Molecule:type iii export protein psce;
PDBTitle: structure of the heterotrimeric complex which regulates type iii2 secretion needle formation
57c2mzdB_



not modelled 13.1 55
PDB header:protein binding
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: characterization of the p300 taz2-p53 tad2 complex and comparison with2 the p300 taz2-p53 tad1 complex
58c2bg9A_



not modelled 13.1 36
PDB header:ion channel/receptor
Chain: A: PDB Molecule:acetylcholine receptor protein, alpha chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
59c4aq5A_



not modelled 13.1 36
PDB header:membrane protein
Chain: A: PDB Molecule:acetylcholine receptor subunit alpha;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
60c6o60A_



not modelled 12.9 29
PDB header:transferase
Chain: A: PDB Molecule:protein prenyltransferase alpha subunit repeat-containing
PDBTitle: crystal structure of ggtase3-fbxl2-skp1 complex
61c6fzoC_



not modelled 12.9 17
PDB header:fluorescent protein
Chain: C: PDB Molecule:smurfp;
PDBTitle: smurfp-y56f mutant
62c2zxeG_



not modelled 12.5 27
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
63d1b8da_



not modelled 12.3 17
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
64c5ol2F_



not modelled 11.9 19
PDB header:flavoprotein
Chain: F: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: the electron transferring flavoprotein/butyryl-coa dehydrogenase2 complex from clostridium difficile
65d2dk5a1



not modelled 11.8 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RPO3F domain-like
66d2cg4a1



not modelled 11.8 5
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
67c4zmuD_



not modelled 11.7 20
PDB header:lyase
Chain: D: PDB Molecule:diguanylate cyclase;
PDBTitle: dcsbis, a diguanylate cyclase from pseudomonas aeruginosa
68d1v65a_



not modelled 11.6 33
Fold:KRAB domain (Kruppel-associated box)
Superfamily:KRAB domain (Kruppel-associated box)
Family:KRAB domain (Kruppel-associated box)
69c6ez3C_



not modelled 11.6 20
PDB header:rna binding protein
Chain: C: PDB Molecule:cyclo(l-leucyl-l-leucyl) synthase;
PDBTitle: structure of cdps from staphylococcus haemolyticus
70c4bjaA_



not modelled 11.5 15
PDB header:transport protein
Chain: A: PDB Molecule:protein glb-12;
PDBTitle: globin-like protein glb-12 from c.elegans
71c2e1cA_



not modelled 11.4 12
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
72d2f22a1



not modelled 11.3 33
Fold:DinB/YfiT-like putative metalloenzymes
Superfamily:DinB/YfiT-like putative metalloenzymes
Family:DinB-like
73c2l8sA_



not modelled 11.3 14
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
74c3stqC_



not modelled 11.3 22
PDB header:toxin
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: hypothetical protein pa2703 pseudomonas aeruginosa pao1
75c5vr2A_



not modelled 11.2 17
PDB header:signaling protein
Chain: A: PDB Molecule:myocilin;
PDBTitle: mouse myocilin leucine zipper c-terminal 7 heptad repeat
76c5zx1A_



not modelled 11.1 24
PDB header:transcription
Chain: A: PDB Molecule:ent;
PDBTitle: crystal structure of ent domain from t. brucei
77d2j7pe1



not modelled 11.1 32
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
78c4p79A_



not modelled 10.9 11
PDB header:cell adhesion
Chain: A: PDB Molecule:claudin-15;
PDBTitle: crystal structure of mouse claudin-15
79d1okkd1



not modelled 10.8 32
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
80c6fkib_



not modelled 10.8 17
PDB header:membrane protein
Chain: B: PDB Molecule:atp synthase subunit beta, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
81d2a26a1



not modelled 10.6 24
Fold:Long alpha-hairpin
Superfamily:Calcyclin-binding protein-like
Family:Siah interacting protein N terminal domain-like
82c6gygA_



not modelled 10.6 26
PDB header:transcription
Chain: A: PDB Molecule:transcription regulator reg576;
PDBTitle: x-ray structure of the apo form of the establishement gene regulator2 reg576 of the g+ plasmid p576
83d3bz6a1



not modelled 10.5 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PSPTO2686-like
84c2vigC_



not modelled 10.3 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:short-chain specific acyl-coa dehydrogenase,;
PDBTitle: crystal structure of human short-chain acyl coa dehydrogenase
85c2lt3A_



not modelled 10.2 45
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, card family;
PDBTitle: solution nmr structure of the c-terminal domain of cdnl from2 myxococcus xanthus
86c3l9kX_



not modelled 10.0 42
PDB header:motor protein
Chain: X: PDB Molecule:dynein intermediate chain, cytosolic;
PDBTitle: insights into dynein assembly from a dynein intermediate chain-light2 chain roadblock structure
87c3l9kZ_



not modelled 10.0 42
PDB header:motor protein
Chain: Z: PDB Molecule:dynein intermediate chain, cytosolic;
PDBTitle: insights into dynein assembly from a dynein intermediate chain-light2 chain roadblock structure
88d1jbob_



not modelled 10.0 18
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
89c5w1sM_



not modelled 10.0 17
PDB header:transferase
Chain: M: PDB Molecule:protein trar;
PDBTitle: x-ray crystal structure of escherichia coli rna polymerase and trar2 complex
90c5j0hA_



not modelled 9.9 38
PDB header:de novo protein
Chain: A: PDB Molecule:design construct 2l6hc3_13;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
91c2k1aA_



not modelled 9.9 16
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
92c3ux4C_



not modelled 9.9 15
PDB header:transport protein
Chain: C: PDB Molecule:acid-activated urea channel;
PDBTitle: crystal structure of the urea channel from the human gastric pathogen2 helicobacter pylori
93d1kn1a_



not modelled 9.9 22
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
94c2jr5A_



not modelled 9.8 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0350 protein vc_2471;
PDBTitle: solution structure of upf0350 protein vc_2471. northeast structural2 genomics target vcr36
95c1q90M_



not modelled 9.8 35
PDB header:photosynthesis
Chain: M: PDB Molecule:cytochrome b6f complex subunit petm;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
96d1q90m_



not modelled 9.8 35
Fold:Single transmembrane helix
Superfamily:PetM subunit of the cytochrome b6f complex
Family:PetM subunit of the cytochrome b6f complex
97c5v1eA_



not modelled 9.8 42
PDB header:antimicrobial protein
Chain: A: PDB Molecule:guavanin 2;
PDBTitle: suboptimization of a glycine rich peptide allows the combinatorial2 space exploration for designing novel antimicrobial peptides
98c2l14B_



not modelled 9.7 55
PDB header:protein binding
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: structure of cbp nuclear coactivator binding domain in complex with2 p53 tad
99d1pzqa_



not modelled 9.7 55
Fold:Dimerisation interlock
Superfamily:Docking domain A of the erythromycin polyketide synthase (DEBS)
Family:Docking domain A of the erythromycin polyketide synthase (DEBS)

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below