Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2171_(lppM)_2432959_2433642
DateMon Aug 5 13:25:29 BST 2019
Unique Job IDad1da7844e8b399a
SequenceVARTRRRGML ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.501 Y:54.786 Z:29.506
Model (left) based on template c2nc8A_
Top template information
PDB header:protein binding
Chain: A: PDB Molecule:lipoprotein lppm;
PDBTitle: nmr structure of the mycobacterium tuberculosis lppm (rv2171) protein2 folded domain
Confidence and coverage
Confidence:100.0% Coverage: 70%
160 residues ( 70% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2nc8A_
100.0 100
PDB header:protein binding
Chain: A: PDB Molecule:lipoprotein lppm;
PDBTitle: nmr structure of the mycobacterium tuberculosis lppm (rv2171) protein2 folded domain
2c2momB_
50.8 23
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
3c2momC_
50.8 23
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
4c2kncA_
47.3 17
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
5c6agfB_
36.3 8
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
6c3ol0C_
30.0 28
PDB header:de novo protein
Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which
PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly
7d1mqma_
25.8 18
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
8c5zlgA_
25.2 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome b reductase 1;
PDBTitle: human duodenal cytochrome b (dcytb) in zinc ion and ascorbate bound2 form
9d2visc_
24.9 20
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
10d2viua_
24.8 20
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
11c2k1lB_
20.4 19
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
12c2k1kA_
20.4 19
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
13c2k1kB_
20.4 19
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
14c2k1lA_
20.4 19
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
15c3a0hJ_
20.1 8
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
16d2axtj1
20.1 8
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
17c1ha0A_
19.0 20
PDB header:viral protein
Chain: A: PDB Molecule:protein (hemagglutinin precursor);
PDBTitle: hemagglutinin precursor ha0
18c3lhnB_
17.5 18
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of putative lipoprotein (np_718719.1) from2 shewanella oneidensis at 1.42 a resolution
19d1q1ua_
16.3 17
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
20c4ev6E_
16.0 20
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
21c6dlnB_
not modelled 15.7 9
PDB header:membrane protein
Chain: B: PDB Molecule:transmembrane protein gp41;
PDBTitle: oligomeric structure of the hiv gp41 mper-tmd in phospholipid bilayers
22c2bbjB_
not modelled 15.5 14
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
23d1qqla_
not modelled 14.6 28
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
24c5namA_
not modelled 14.6 16
PDB header:signaling protein
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: nmr structure of tlr4 transmembrane domain (624-670) in dmpg/dhpc2 bicelles
25c5v2sA_
not modelled 14.5 21
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
26c6f7eA_
not modelled 14.2 16
PDB header:carbohydrate
Chain: A: PDB Molecule:putative secreted cellulose binding protein;
PDBTitle: nmr solution structure of the cellulose-binding family 2 carbohydrate2 binding domain (cbm2) from sclpmo9c
27d1h6ta1
not modelled 14.0 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Internalin Ig-like domain
28c3f1rA_
not modelled 14.0 39
PDB header:hormone
Chain: A: PDB Molecule:fibroblast growth factor 20;
PDBTitle: crystal structure of fgf20 dimer
29c3hbwA_
not modelled 13.6 17
PDB header:hormone
Chain: A: PDB Molecule:fibroblast growth factor 13;
PDBTitle: crystal structure of human fibroblast growth factor2 homologous factor 2a (fhf2a), also referred to as3 fibroblast growth factor 13a (fgf13a)
30c4u3qA_
not modelled 13.1 24
PDB header:lipid binding protein
Chain: A: PDB Molecule:17 kda lipoprotein;
PDBTitle: crystal structure of recombinant tp0435 from treponema pallidum
31c5xnmj_
not modelled 12.7 13
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
32c6e8wC_
not modelled 12.7 8
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: mper-tm domain of hiv-1 envelope glycoprotein (env)
33d1hkna_
not modelled 12.6 33
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
34c5xsyB_
not modelled 12.6 8
PDB header:membrane protein
Chain: B: PDB Molecule:voltage-gated sodium channel beta subunit 1;
PDBTitle: structure of the nav1.4-beta1 complex from electric eel
35c5csaA_
not modelled 12.5 18
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of domains bt-bccp-ac1-ac5 of yeast acetyl-coa2 carboxylase
36d1qqka_
not modelled 12.3 28
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
37c3v42A_
not modelled 12.1 21
PDB header:protein binding
Chain: A: PDB Molecule:folliculin;
PDBTitle: crystal structure of renal tumor suppressor protein, folliculin
38d1ihka_
not modelled 12.0 28
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
39c2l8sA_
not modelled 11.7 20
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
40c6ntwA_
not modelled 11.6 57
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:probable l,d-transpeptidase ycbb;
PDBTitle: crystal structure of e. coli ycbb
41c3ogfA_
not modelled 11.4 36
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed dimeric trefoil-fold sub-domain which
PDBTitle: crystal structure of difoil-4p homo-trimer: de novo designed dimeric2 trefoil-fold sub-domain which forms homo-trimer assembly
42c4uqzB_
not modelled 11.3 50
PDB header:protein transport
Chain: B: PDB Molecule:hsib1;
PDBTitle: coevolution of the atpase clpv, the tssb-tssc sheath and2 the accessory hsie protein distinguishes two type vi3 secretion classes
43c3cfuA_
not modelled 11.2 10
PDB header:lipoprotein
Chain: A: PDB Molecule:uncharacterized lipoprotein yjha;
PDBTitle: crystal structure of the yjha protein from bacillus subtilis.2 northeast structural genomics consortium target sr562
44d1nuna_
not modelled 11.0 22
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
45d1ti8a1
not modelled 10.6 25
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
46c3jcuj_
not modelled 10.1 17
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
47c2mkvA_
not modelled 9.6 8
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
48c5fu5A_
not modelled 8.6 24
PDB header:sugar binding protein
Chain: A: PDB Molecule:cbm77-rfpl;
PDBTitle: the complexity of the ruminococcus flavefaciens cellulosome2 reflects an expansion in glycan recognition
49c6c14A_
not modelled 8.5 13
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:protocadherin-15;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex
50d1bfga_
not modelled 8.4 33
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
51d1fmms_
not modelled 7.9 33
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
52d1i8na_
not modelled 7.8 40
Fold:Hairpin loop containing domain-like
Superfamily:Hairpin loop containing domain-like
Family:Anti-platelet protein
53c1i8nA_
not modelled 7.8 40
PDB header:toxin
Chain: A: PDB Molecule:anti-platelet protein;
PDBTitle: crystal structure of leech anti-platelet protein
54d3brda3
not modelled 7.6 13
Fold:beta-Trefoil
Superfamily:DNA-binding protein LAG-1 (CSL)
Family:DNA-binding protein LAG-1 (CSL)
55c3mlhA_
not modelled 7.3 19
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: crystal structure of the 2009 h1n1 influenza virus hemagglutinin2 receptor-binding domain
56c2k9yA_
not modelled 7.0 20
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
57d1oisa_
not modelled 7.0 36
Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
58c2pohA_
not modelled 6.6 14
PDB header:viral protein
Chain: A: PDB Molecule:head completion protein;
PDBTitle: structure of phage p22 tail needle gp26
59c2z4hB_
not modelled 6.3 8
PDB header:signaling protein activator
Chain: B: PDB Molecule:copper homeostasis protein cutf;
PDBTitle: crystal structure of the cpx pathway activator nlpe from2 escherichia coli
60d1h6ua1
not modelled 6.2 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Internalin Ig-like domain
61c3j0cH_
not modelled 6.2 8
PDB header:virus
Chain: H: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map
62c2k3iA_
not modelled 6.1 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yiis;
PDBTitle: solution nmr structure of protein yiis from shigella flexneri.2 northeast structural genomics consortium target sfr90
63c4dzgA_
not modelled 6.1 17
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:plig;
PDBTitle: crystal structure of aeromonas hydrophila plig, a periplasmic lysozyme2 inhibitor of g-type lysozyme
64d1ry7a_
not modelled 6.0 33
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
65c4heaK_
not modelled 5.9 18
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit 11;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
66c5k6lA_
not modelled 5.8 11
PDB header:hydrolase
Chain: A: PDB Molecule:b-glucosidase;
PDBTitle: structure of a gh3 b-glucosidase from cow rumen metagenome
67c3rkoF_
not modelled 5.6 14
PDB header:oxidoreductase
Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
68d1k4ta3
not modelled 5.5 18
Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
69c4b19A_
not modelled 5.5 38
PDB header:toxin
Chain: A: PDB Molecule:pepa1;
PDBTitle: s. aureus pepa1 nmr structure
70c2fyuE_
not modelled 5.3 12
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor

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