Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2172c_(-)_2433639_2434544
DateMon Aug 5 13:25:29 BST 2019
Unique Job ID81711de6f76a1866
SequenceVTLNTIALEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.317 Y:47.658 Z:61.233
Model (left) based on template c3ijdB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: uncharacterized protein cthe_2304 from clostridium thermocellum binds2 two copies of 5-methyl-5,6,7,8-tetrahydrofolic acid
Confidence and coverage
Confidence:100.0% Coverage: 79%
239 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ijdB_



100.0 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: uncharacterized protein cthe_2304 from clostridium thermocellum binds2 two copies of 5-methyl-5,6,7,8-tetrahydrofolic acid
2c6fnuA_



99.9 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:methylenetetrahydrofolate reductase 1;
PDBTitle: structure of s. cerevisiae methylenetetrahydrofolate reductase 1,2 catalytic domain
3d1v93a_



99.8 19
Fold:TIM beta/alpha-barrel
Superfamily:FAD-linked oxidoreductase
Family:Methylenetetrahydrofolate reductase
4d1b5ta_



99.7 14
Fold:TIM beta/alpha-barrel
Superfamily:FAD-linked oxidoreductase
Family:Methylenetetrahydrofolate reductase
5c2fmoA_



99.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate reductase;
PDBTitle: ala177val mutant of e. coli methylenetetrahydrofolate2 reductase
6c6fcxA_



99.5 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:methylenetetrahydrofolate reductase;
PDBTitle: structure of human 5,10-methylenetetrahydrofolate reductase (mthfr)
7c3tr9A_



70.7 17
PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii
8c6cluC_



63.3 21
PDB header:antimicrobial protein
Chain: C: PDB Molecule:dihydropteroate synthase;
PDBTitle: staphylococcus aureus dihydropteroate synthase (sadhps) f17l e208k2 double mutant structure
9c4i7vD_



61.5 16
PDB header:biosynthetic protein
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: agrobacterium tumefaciens dhdps with pyruvate
10c3ug9A_



55.9 26
PDB header:membrane protein
Chain: A: PDB Molecule:archaeal-type opsin 1, archaeal-type opsin 2;
PDBTitle: crystal structure of the closed state of channelrhodopsin
11c5ks8D_



51.4 16
PDB header:ligase
Chain: D: PDB Molecule:pyruvate carboxylase subunit beta;
PDBTitle: crystal structure of two-subunit pyruvate carboxylase from2 methylobacillus flagellatus
12c3daqB_



51.0 18
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus
13c5ks8F_



49.8 16
PDB header:ligase
Chain: F: PDB Molecule:pyruvate carboxylase subunit beta;
PDBTitle: crystal structure of two-subunit pyruvate carboxylase from2 methylobacillus flagellatus
14c3lerA_



45.1 20
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from campylobacter2 jejuni subsp. jejuni nctc 11168
15c3eefA_



43.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:n-carbamoylsarcosine amidase related protein;
PDBTitle: crystal structure of n-carbamoylsarcosine amidase from thermoplasma2 acidophilum
16c4n7bA_



42.7 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:lytb;
PDBTitle: structure of the e-1-hydroxy-2-methyl-but-2-enyl-4-diphosphate2 reductase from plasmodium falciparum
17d1to0a_



40.3 17
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YbeA-like
18d1pdaa2



40.1 32
Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
19d1pjqa3



40.0 26
Fold:Siroheme synthase middle domains-like
Superfamily:Siroheme synthase middle domains-like
Family:Siroheme synthase middle domains-like
20d2j0pa1



38.6 21
Fold:Heme iron utilization protein-like
Superfamily:Heme iron utilization protein-like
Family:HemS/ChuS-like
21d1gtka2



not modelled 37.7 32
Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
22c2nx9B_



not modelled 37.2 16
PDB header:lyase
Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha;
PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae
23c3pkrA_



not modelled 36.8 17
PDB header:motor protein
Chain: A: PDB Molecule:flagellar motor switch protein;
PDBTitle: crystal structure of flig (residue 86-343) from h. pylori
24d2hq2a1



not modelled 36.4 21
Fold:Heme iron utilization protein-like
Superfamily:Heme iron utilization protein-like
Family:HemS/ChuS-like
25c3n2xB_



not modelled 36.1 20
PDB header:lyase
Chain: B: PDB Molecule:uncharacterized protein yage;
PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate
26c3vndD_



not modelled 34.1 17
PDB header:lyase
Chain: D: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha-subunit from the2 psychrophile shewanella frigidimarina k14-2
27d1eyea_



not modelled 33.8 18
Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
28c5k9xA_



not modelled 31.5 16
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha chain from legionella2 pneumophila subsp. pneumophila
29c3thaB_



not modelled 29.8 13
PDB header:lyase
Chain: B: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni.
30c5ktlA_



not modelled 29.0 14
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-tetrahydrodipicolinate synthase;
PDBTitle: dihydrodipicolinate synthase from the industrial and evolutionarily2 important cyanobacteria anabaena variabilis.
31c2y8vB_



not modelled 27.4 18
PDB header:hydrolase
Chain: B: PDB Molecule:class iii chitinase, putative;
PDBTitle: structure of chitinase, chic, from aspergillus fumigatus.
32c3la8A_



not modelled 26.0 18
PDB header:transferase
Chain: A: PDB Molecule:putative purine nucleoside phosphorylase;
PDBTitle: the crystal structure of smu.1229 from streptococcus mutans ua159
33c3ke8A_



not modelled 25.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: crystal structure of isph:hmbpp-complex
34c3urkA_



not modelled 25.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: isph in complex with propynyl diphosphate (1061)
35c5douC_



not modelled 24.9 14
PDB header:ligase
Chain: C: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
36d1t3va_



not modelled 24.8 9
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
37c1rr2A_



not modelled 24.5 16
PDB header:transferase
Chain: A: PDB Molecule:transcarboxylase 5s subunit;
PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid
38c3pl4A_



not modelled 24.3 16
PDB header:motor protein
Chain: A: PDB Molecule:flagellar motor switch protein;
PDBTitle: crystal structure of flig (residue 116-343) from h. pylori
39c3eb2A_



not modelled 23.8 20
PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution
40d1tx2a_



not modelled 22.6 15
Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
41c1tx2A_



not modelled 22.6 15
PDB header:transferase
Chain: A: PDB Molecule:dhps, dihydropteroate synthase;
PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis
42c4imhA_



not modelled 21.0 26
PDB header:metal transport, transport protein
Chain: A: PDB Molecule:hemin degrading factor;
PDBTitle: crystal structure of cytoplasmic heme binding protein, phus, from2 pseudomonas aeruginosa
43c3cyvA_



not modelled 20.7 10
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 shigella flexineri: new insights into its catalytic3 mechanism
44c6g3uA_



not modelled 19.6 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:isocitrate dehydrogenase;
PDBTitle: structure of pseudomonas aeruginosa isocitrate dehydrogenase, idh
45d1bnba_



not modelled 19.6 50
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
46d1ajza_



not modelled 18.5 20
Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
47c6cceD_



not modelled 18.5 26
PDB header:transcription/dna/antibiotic
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of a mycobacterium smegmatis rna polymerase2 transcription initiation complex with inhibitor kanglemycin a
48c2jmkA_



not modelled 18.3 38
PDB header:protein binding
Chain: A: PDB Molecule:hypothetical protein ta0956;
PDBTitle: solution structure of ta0956
49c4htgA_



not modelled 17.5 32
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:porphobilinogen deaminase, chloroplastic;
PDBTitle: porphobilinogen deaminase from arabidopsis thaliana
50c2xucA_



not modelled 17.3 15
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: natural product-guided discovery of a fungal chitinase inhibitor
51c2yxgD_



not modelled 17.2 9
PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa)
52c3e96B_



not modelled 17.1 11
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from bacillus2 clausii
53c2kb2A_



not modelled 17.0 12
PDB header:signaling protein, hydrolase regulator
Chain: A: PDB Molecule:blrp1;
PDBTitle: blrp1 bluf
54c2huzB_



not modelled 16.8 12
PDB header:structural genomics, transferase
Chain: B: PDB Molecule:glucosamine 6-phosphate n-acetyltransferase;
PDBTitle: crystal structure of gnpnat1
55d1ta3a_



not modelled 16.8 16
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
56c3noeA_



not modelled 16.7 20
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa
57c2uy2A_



not modelled 16.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:endochitinase;
PDBTitle: sccts1_apo crystal structure
58d1xkya1



not modelled 15.7 20
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
59c4iijF_



not modelled 15.7 39
PDB header:cell cycle
Chain: F: PDB Molecule:tubulin tyrosine ligase, ttl;
PDBTitle: crystal structure of tubulin-stathmin-ttl-apo complex
60c2vefB_



not modelled 15.1 14
PDB header:transferase
Chain: B: PDB Molecule:dihydropteroate synthase;
PDBTitle: dihydropteroate synthase from streptococcus pneumoniae
61d1o5ka_



not modelled 15.1 16
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
62c6npcB_



not modelled 15.0 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:tmpa, 2-trimethylaminoethylphosphonate hydroxylase;
PDBTitle: x-ray crystal structure of tmpa, 2-trimethylaminoethylphosphonate2 hydroxylase, with fe, 2og, and 2-trimethylaminoethylphosphonate
63c4nq1B_



not modelled 14.7 11
PDB header:lyase
Chain: B: PDB Molecule:4-hydroxy-tetrahydrodipicolinate synthase;
PDBTitle: legionella pneumophila dihydrodipicolinate synthase with first2 substrate pyruvate bound in the active site
64c3mcwA_



not modelled 14.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative hydrolase;
PDBTitle: crystal structure of an a putative hydrolase of the isochorismatase2 family (cv_1320) from chromobacterium violaceum atcc 12472 at 1.06 a3 resolution
65c4dppB_



not modelled 14.6 18
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase 2, chloroplastic;
PDBTitle: the structure of dihydrodipicolinate synthase 2 from arabidopsis2 thaliana
66c4aczB_



not modelled 14.5 15
PDB header:hydrolase
Chain: B: PDB Molecule:endo-alpha-mannosidase;
PDBTitle: structure of the gh99 endo-alpha-mannosidase from2 bacteroides thetaiotaomicron
67c3imkA_



not modelled 14.5 18
PDB header:metal binding protein
Chain: A: PDB Molecule:putative molybdenum carrier protein;
PDBTitle: crystal structure of putative molybdenum carrier protein (yp_461806.1)2 from syntrophus aciditrophicus sb at 1.45 a resolution
68c2vp8A_



not modelled 14.5 17
PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase 2;
PDBTitle: structure of mycobacterium tuberculosis rv1207
69d1us7b_



not modelled 14.4 19
Fold:Hsp90 co-chaperone CDC37
Superfamily:Hsp90 co-chaperone CDC37
Family:Hsp90 co-chaperone CDC37
70c1us7B_



not modelled 14.4 19
PDB header:chaperone
Chain: B: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: complex of hsp90 and p50
71d2c1wa1



not modelled 14.1 26
Fold:EndoU-like
Superfamily:EndoU-like
Family:Eukaryotic EndoU ribonuclease
72d1fftb1



not modelled 13.7 11
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
73d1itwa_



not modelled 13.6 23
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Monomeric isocitrate dehydrogenase
74d3bula2



not modelled 13.5 9
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
75d1l3ka2



not modelled 13.0 13
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
76c3dnfB_



not modelled 13.0 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway
77c3nwrA_



not modelled 12.6 15
PDB header:lyase
Chain: A: PDB Molecule:a rubisco-like protein;
PDBTitle: crystal structure of a rubisco-like protein from burkholderia fungorum
78c2y8kA_



not modelled 12.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate binding family 6;
PDBTitle: structure of ctgh5-cbm6, an arabinoxylan-specific xylanase.
79c4b16A_



not modelled 12.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase like lectin;
PDBTitle: crystal structure of tamarind chitinase like lectin (tcll) complexed2 with n-acetyl glucosamine (glcnac)
80c2h31A_



not modelled 12.3 15
PDB header:ligase, lyase
Chain: A: PDB Molecule:multifunctional protein ade2;
PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis
81c2hdlA_



not modelled 12.2 31
PDB header:cytokine
Chain: A: PDB Molecule:small inducible cytokine b14;
PDBTitle: solution structure of brak/cxcl14
82d1qopa_



not modelled 12.2 17
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
83c5dotA_



not modelled 12.1 15
PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 apo form
84d1o13a_



not modelled 11.6 9
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
85c4heoA_



not modelled 11.6 32
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: hendra virus phosphoprotein c terminal domain
86d4croa_



not modelled 11.6 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
87c5ey5A_



not modelled 11.6 22
PDB header:lyase
Chain: A: PDB Molecule:lbcats-a;
PDBTitle: lbcats
88c3navB_



not modelled 11.4 17
PDB header:lyase
Chain: B: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961
89d1yrxa1



not modelled 11.4 15
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:BLUF domain
90c4r33A_



not modelled 11.4 13
PDB header:lyase
Chain: A: PDB Molecule:nosl;
PDBTitle: x-ray structure of the tryptophan lyase nosl with tryptophan and s-2 adenosyl-l-homocysteine bound
91d1kr7a_



not modelled 11.3 30
Fold:Globin-like
Superfamily:Globin-like
Family:Nerve tissue mini-hemoglobin (neural globin)
92c4ja0A_



not modelled 11.1 17
PDB header:protein binding
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase;
PDBTitle: crystal structure of the invertebrate bi-functional purine2 biosynthesis enzyme paics at 2.8 a resolution
93c6omzA_



not modelled 11.0 21
PDB header:ligase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: crystal structure of dihydropteroate synthase from mycobacterium2 smegmatis with bound 6-hydroxymethylpterin-monophosphate
94c2ehhE_



not modelled 10.8 11
PDB header:lyase
Chain: E: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus
95c5c8jJ_



not modelled 10.5 11
PDB header:membrane protein
Chain: J: PDB Molecule:protein mj0480;
PDBTitle: a yidc-like protein in the archaeal plasma membrane
96c2ypnA_



not modelled 10.5 32
PDB header:transferase
Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase);
PDBTitle: hydroxymethylbilane synthase
97d2hvma_



not modelled 10.5 16
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
98c2pijB_



not modelled 10.3 18
PDB header:transcription
Chain: B: PDB Molecule:prophage pfl 6 cro;
PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5
99c2o5iD_



not modelled 10.3 23
PDB header:transferase/dna-rna hybrid
Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: crystal structure of the t. thermophilus rna polymerase elongation2 complex

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