Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2178c_(aroG)_2440340_2441728
DateMon Aug 5 13:25:30 BST 2019
Unique Job ID9dfda8afe7102da9
SequenceMNWTVDIPID ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:63.763 Y:62.339 Z:53.124
Model (left) based on template d2b7oa1
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class-II DAHP synthetase
Confidence and coverage
Confidence:100.0% Coverage: 97%
449 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2b7oa1



100.0 97
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class-II DAHP synthetase
2c5hudA_



100.0 66
PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate (dahp)
PDBTitle: non-covalent complex of and dahp synthase and chorismate mutase from2 corynebacterium glutamicum with bound transition state analog
3c5uxmA_



100.0 50
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: type ii dah7ps from pseudomonas aeruginosa with trp bound
4c6bmcA_



100.0 42
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: the structure of a dimeric type ii dah7ps associated with pyocyanin2 biosynthesis in pseudomonas aeruginosa
5c4hsnA_



98.5 25
PDB header:transferase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;
PDBTitle: crystal structure of dah7ps from neisseria meningitidis
6d1n8fa_



98.3 22
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
7d1of8a_



98.2 23
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
8c3tqkA_



98.2 26
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: structure of phospho-2-dehydro-3-deoxyheptonate aldolase from2 francisella tularensis schu s4
9c1ofaB_



98.0 25
PDB header:lyase
Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: crystal structure of the tyrosine-regulated2 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase3 from saccharomyces cerevisiae in complex with4 phosphoenolpyruvate and cobalt(ii)
10c6agmA_



97.9 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive;
PDBTitle: molecular basis for feedback inhibition of tyrosine-regulated 3-deoxy-2 d-arabino-heptulosonate-7-phosphate synthase from escherichia coli
11c4lu0A_



96.6 10
PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of 2-keto-3-deoxy-d-manno-octulosonate-8-phosphate2 synthase from pseudomonas aeruginosa.
12c1zcoA_



95.9 18
PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphoheptonate aldolase;
PDBTitle: crystal structure of pyrococcus furiosus 3-deoxy-d-arabino-2 heptulosonate 7-phosphate synthase
13c6mdyC_



95.8 14
PDB header:hydrolase
Chain: C: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of a 2-dehydro-3-deoxyphosphooctonate aldolase from2 legionella pneumophila philadelphia 1
14c1vs1B_



95.7 19
PDB header:transferase
Chain: B: PDB Molecule:3-deoxy-7-phosphoheptulonate synthase;
PDBTitle: crystal structure of 3-deoxy-d-arabino-heptulosonate-7-2 phosphate synthase (dahp synthase) from aeropyrum pernix3 in complex with mn2+ and pep
15d1vr6a1



93.6 16
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
16c3stgA_



93.0 16
PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of a58p, del(n59), and loop 7 truncated mutant of 3-2 deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from3 neisseria meningitidis
17d2a21a1



90.6 21
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
18c3nvtA_



88.5 16
PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;
PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e
19c3s6oD_



88.1 18
PDB header:hydrolase
Chain: D: PDB Molecule:polysaccharide deacetylase family protein;
PDBTitle: crystal structure of a polysaccharide deacetylase family protein from2 burkholderia pseudomallei
20d1d9ea_



86.6 9
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
21c4z1bA_



not modelled 85.1 18
PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: structure of h204a mutant kdo8ps from h.pylori
22c3fs2A_



not modelled 84.5 16
PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 bruciella melitensis at 1.85a resolution
23c3gr7A_



not modelled 83.6 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal crystal form
24c1ofpA_



not modelled 81.9 23
PDB header:lyase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: crystal structure of the tyrosine-regulated 3-deoxy-d-arabino-2 heptulosonate-7-phosphate synthase from saccharomyces cerevisiae
25d1o60a_



not modelled 80.6 14
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
26c3sz8D_



not modelled 76.6 15
PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei
27c6bngB_



not modelled 75.4 9
PDB header:transferase
Chain: B: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 acinetobacter baumannii
28c3hf3A_



not modelled 69.2 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01
29d1z41a1



not modelled 68.7 16
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
30c4qn9A_



not modelled 67.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:n-acyl-phosphatidylethanolamine-hydrolyzing phospholipase
PDBTitle: structure of human nape-pld
31c4gtnA_



not modelled 66.5 18
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: structure of anthranilate phosphoribosyl transferase from2 acinetobacter baylyi
32d1uuma_



not modelled 65.4 19
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
33c5trwA_



not modelled 59.5 22
PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase pdxy;
PDBTitle: crystal structure of pyridoxamine kinase pdxy from burkholderia2 xenovorans
34c5ocsB_



not modelled 59.4 15
PDB header:flavoprotein
Chain: B: PDB Molecule:putative nadh-depentdent flavin oxidoreductase;
PDBTitle: ene-reductase (er/oye) from ralstonia (cupriavidus) metallidurans
35c3qbuD_



not modelled 59.1 20
PDB header:hydrolase
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of putative peptidoglycan deactelyase (hp0310) from2 helicobacter pylori
36c3t4cD_



not modelled 53.1 14
PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 1;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia ambifaria
37d2nu7b1



not modelled 52.2 18
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
38d1vi9a_



not modelled 45.2 24
Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:PfkB-like kinase
39c3kruC_



not modelled 45.2 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39
40d1ps9a1



not modelled 42.7 15
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
41c3rxzA_



not modelled 39.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase;
PDBTitle: crystal structure of putative polysaccharide deacetylase from2 mycobacterium smegmatis
42c5b6aA_



not modelled 39.4 19
PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase pdxy;
PDBTitle: structure of pyridoxal kinasefrom pseudomonas aeruginosa
43c1tv5A_



not modelled 37.7 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase homolog, mitochondrial;
PDBTitle: plasmodium falciparum dihydroorotate dehydrogenase with a bound2 inhibitor
44d1tv5a1



not modelled 37.7 33
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
45c4qg5D_



not modelled 37.6 28
PDB header:isomerase
Chain: D: PDB Molecule:putative phosphoglucomutase;
PDBTitle: crystal structure of phosphoglucomutase from leishmania major at 3.52 angstrom resolution
46c5z34A_



not modelled 37.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: the structure of a chitin deacetylase from bombyx mori provide the2 first insight into insect chitin deacetylation mechanism
47d2hiya1



not modelled 36.8 12
Fold:SP0830-like
Superfamily:SP0830-like
Family:SP0830-like
48c6b8sB_



not modelled 36.2 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydroorotate dehydrogenase (quinone);
PDBTitle: crystal structure of dihydroorotate dehydrogenase from helicobacter2 pylori with bound fmn
49d1z7aa1



not modelled 35.2 16
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:PA1517-like
50d1icpa_



not modelled 32.0 17
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
51c2ymbB_



not modelled 31.4 17
PDB header:protein transport
Chain: B: PDB Molecule:mit domain-containing protein 1;
PDBTitle: structures of mitd1
52c1ps9A_



not modelled 30.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-dienoyl2 coa reductase
53c2ymbC_



not modelled 29.5 17
PDB header:protein transport
Chain: C: PDB Molecule:mit domain-containing protein 1;
PDBTitle: structures of mitd1
54c3pg8B_



not modelled 28.1 19
PDB header:transferase
Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima
55c6qkgB_



not modelled 24.4 17
PDB header:flavoprotein
Chain: B: PDB Molecule:ncr a;
PDBTitle: 2-naphthoyl-coa reductase(ncr)
56d1d3ga_



not modelled 24.1 16
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
57d1xima_



not modelled 23.8 16
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
58c4q5uC_



not modelled 23.7 33
PDB header:calcium binding protein/protein binding
Chain: C: PDB Molecule:serine/threonine-protein phosphatase 2b catalytic subunit
PDBTitle: structure of calmodulin bound to its recognition site from calcineurin
59d1vyra_



not modelled 23.6 16
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
60c4ay8B_



not modelled 23.5 17
PDB header:transferase
Chain: B: PDB Molecule:methylcobalamin\: coenzyme m methyltransferase;
PDBTitle: semet-derivative of a methyltransferase from m. mazei
61d1ccwa_



not modelled 23.3 16
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
62d1e3ha5



not modelled 23.2 58
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
63c5wtqB_



not modelled 22.7 20
PDB header:chaperone
Chain: B: PDB Molecule:proteasome assembly chaperone 4;
PDBTitle: crystal structure of human proteasome-assembling chaperone pac4
64d1lhpa_



not modelled 21.7 14
Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:PfkB-like kinase
65c2fptA_



not modelled 21.1 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial;
PDBTitle: dual binding mode of a novel series of dhodh inhibitors
66c5znsA_



not modelled 20.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: insect chitin deacetylase
67c2we7A_



not modelled 20.8 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv0376c2 homologue from mycobacterium smegmatis
68c2jziB_



not modelled 20.2 37
PDB header:metal binding protein
Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2b
PDBTitle: structure of calmodulin complexed with the calmodulin2 binding domain of calcineurin
69d2o3la1



not modelled 19.5 28
Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
70c3k30B_



not modelled 19.3 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex
71d1vfga1



not modelled 19.3 46
Fold:Poly A polymerase C-terminal region-like
Superfamily:Poly A polymerase C-terminal region-like
Family:Poly A polymerase C-terminal region-like
72d1eucb1



not modelled 19.1 14
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
73d1kfia2



not modelled 19.1 18
Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
74d1ob0a2



not modelled 18.7 12
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
75c5jp6A_



not modelled 18.4 25
PDB header:hydrolase
Chain: A: PDB Molecule:putative polysaccharide deacetylase;
PDBTitle: bdellovibrio bacteriovorus peptidoglycan deacetylase bd3279
76d2hh6a1



not modelled 17.9 29
Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
77c1y80A_



not modelled 17.6 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted cobalamin binding protein;
PDBTitle: structure of a corrinoid (factor iiim)-binding protein from moorella2 thermoacetica
78c4a3uB_



not modelled 17.5 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh\:flavin oxidoreductase/nadh oxidase;
PDBTitle: x-structure of the old yellow enzyme homologue from zymomonas mobilis2 (ncr)
79c2r28D_



not modelled 17.2 37
PDB header:metal binding protein/hydrolase
Chain: D: PDB Molecule:serine/threonine-protein phosphatase 2b
PDBTitle: the complex structure of calmodulin bound to a calcineurin2 peptide
80d1miwa1



not modelled 17.2 38
Fold:Poly A polymerase C-terminal region-like
Superfamily:Poly A polymerase C-terminal region-like
Family:Poly A polymerase C-terminal region-like
81d1ud2a2



not modelled 17.0 11
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
82c6omzA_



not modelled 16.7 16
PDB header:ligase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: crystal structure of dihydropteroate synthase from mycobacterium2 smegmatis with bound 6-hydroxymethylpterin-monophosphate
83d2iw0a1



not modelled 16.2 14
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
84c3bv6D_



not modelled 15.7 33
PDB header:hydrolase
Chain: D: PDB Molecule:metal-dependent hydrolase;
PDBTitle: crystal structure of uncharacterized metallo protein from vibrio2 cholerae with beta-lactamase like fold
85d1k47a2



not modelled 15.6 8
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Phosphomevalonate kinase (PMK)
86c4muoB_



not modelled 15.5 16
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein ybib;
PDBTitle: the trpd2 enzyme from e.coli: ybib
87c3hvyC_



not modelled 15.4 15
PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution
88c3mbjA_



not modelled 15.2 9
PDB header:transferase
Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase;
PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form)
89c2yewI_



not modelled 15.2 23
PDB header:virus
Chain: I: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: modeling barmah forest virus structural proteins
90d1v1ha1



not modelled 14.9 31
Fold:Triple beta-spiral
Superfamily:Fibre shaft of virus attachment proteins
Family:Adenovirus
91c2wltA_



not modelled 14.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: the crystal structure of helicobacter pylori l-asparaginase at 1.4 a2 resolution
92c5b42A_



not modelled 14.7 30
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: crystal structure of the c-terminal endonuclease domain of aquifex2 aeolicus mutl.
93c5il0B_



not modelled 14.0 16
PDB header:rna binding protein
Chain: B: PDB Molecule:mettl14;
PDBTitle: crystal structural of the mettl3-mettl14 complex for n6-adenosine2 methylation
94c1miyB_



not modelled 13.9 38
PDB header:translation, transferase
Chain: B: PDB Molecule:trna cca-adding enzyme;
PDBTitle: crystal structure of bacillus stearothermophilus cca-adding enzyme in2 complex with ctp
95c3ufxG_



not modelled 13.9 7
PDB header:ligase
Chain: G: PDB Molecule:succinyl-coa synthetase beta subunit;
PDBTitle: thermus aquaticus succinyl-coa synthetase in complex with gdp-mn2+
96c4jicB_



not modelled 13.6 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:gtn reductase;
PDBTitle: glycerol trinitrate reductase nera from agrobacterium radiobacter
97d1f76a_



not modelled 13.5 19
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
98c1vfgB_



not modelled 13.3 46
PDB header:transferase/rna
Chain: B: PDB Molecule:poly a polymerase;
PDBTitle: crystal structure of trna nucleotidyltransferase complexed2 with a primer trna and an incoming atp analog
99c5du2B_



not modelled 13.3 33
PDB header:transferase
Chain: B: PDB Molecule:espg2 glycosyltransferase;
PDBTitle: structural analysis of espg2 glycosyltransferase

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